data_4IMT # _model_server_result.job_id -L7XHuupNb_yWnv75B-3Mg _model_server_result.datetime_utc '2024-11-25 09:43:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4imt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":804}' # _entry.id 4IMT # _exptl.entry_id 4IMT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.563 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "6,6'-{[4-(3-aminopropyl)benzene-1,3-diyl]diethane-2,1-diyl}bis(4-methylpyridin-2-amine)" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IMT _cell.length_a 51.658 _cell.length_b 110.723 _cell.length_c 163.713 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 G ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc4 G ZN ZN . A ZN 805 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc5 G ZN ZN . A ZN 805 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'C25 H33 N5' _chem_comp.formula_weight 403.563 _chem_comp.id 1EW _chem_comp.mon_nstd_flag . _chem_comp.name "6,6'-{[4-(3-aminopropyl)benzene-1,3-diyl]diethane-2,1-diyl}bis(4-methylpyridin-2-amine)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C04 1EW sing 1 n n C04 C03 1EW doub 2 n y C04 C05 1EW sing 3 n y C03 C02 1EW sing 4 n y C05 C06 1EW doub 5 n y C02 N02 1EW sing 6 n n C02 N01 1EW doub 7 n y C09 C11 1EW sing 8 n n C09 C08 1EW sing 9 n n C06 N01 1EW sing 10 n y C06 C08 1EW sing 11 n n C11 C12 1EW doub 12 n y C11 C16 1EW sing 13 n y C12 C13 1EW sing 14 n y C16 C15 1EW doub 15 n y C13 C14 1EW doub 16 n y C15 C14 1EW sing 17 n y C15 C29 1EW sing 18 n n C14 C17 1EW sing 19 n n C29 C28 1EW sing 20 n n C28 C26 1EW sing 21 n n N20 C19 1EW sing 22 n n C18 C17 1EW sing 23 n n C18 C19 1EW sing 24 n n N21 C26 1EW doub 25 n y N21 C22 1EW sing 26 n y C26 C25 1EW sing 27 n y N22 C22 1EW sing 28 n n C22 C23 1EW doub 29 n y C25 C24 1EW doub 30 n y C23 C24 1EW sing 31 n y C24 C27 1EW sing 32 n n N22 H1 1EW sing 33 n n N22 H2 1EW sing 34 n n C23 H3 1EW sing 35 n n C27 H4 1EW sing 36 n n C27 H5 1EW sing 37 n n C27 H6 1EW sing 38 n n C25 H7 1EW sing 39 n n C28 H8 1EW sing 40 n n C28 H9 1EW sing 41 n n C29 H10 1EW sing 42 n n C29 H11 1EW sing 43 n n C17 H12 1EW sing 44 n n C17 H13 1EW sing 45 n n C18 H14 1EW sing 46 n n C18 H15 1EW sing 47 n n C19 H16 1EW sing 48 n n C19 H17 1EW sing 49 n n N20 H18 1EW sing 50 n n N20 H19 1EW sing 51 n n C13 H21 1EW sing 52 n n C12 H22 1EW sing 53 n n C16 H23 1EW sing 54 n n C09 H24 1EW sing 55 n n C09 H25 1EW sing 56 n n C08 H26 1EW sing 57 n n C08 H27 1EW sing 58 n n C05 H28 1EW sing 59 n n N02 H29 1EW sing 60 n n N02 H30 1EW sing 61 n n C03 H31 1EW sing 62 n n C07 H32 1EW sing 63 n n C07 H33 1EW sing 64 n n C07 H34 1EW sing 65 n n # _atom_sites.entry_id 4IMT _atom_sites.fract_transf_matrix[1][1] 0.019358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009032 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 801 750 HEM HEM . D 3 H4B A 1 802 760 H4B H4B . E 4 1EW A 1 803 800 1EW H32 . F 5 ACT A 1 804 860 ACT ACT . G 6 ZN A 1 805 900 ZN ZN . H 2 HEM B 1 801 750 HEM HEM . I 3 H4B B 1 802 760 H4B H4B . J 5 ACT B 1 803 860 ACT ACT . K 4 1EW B 1 804 800 1EW H32 . L 7 HOH A 1 901 1 HOH HOH . L 7 HOH A 2 902 4 HOH HOH . L 7 HOH A 3 903 8 HOH HOH . L 7 HOH A 4 904 11 HOH HOH . L 7 HOH A 5 905 13 HOH HOH . L 7 HOH A 6 906 21 HOH HOH . L 7 HOH A 7 907 22 HOH HOH . L 7 HOH A 8 908 27 HOH HOH . L 7 HOH A 9 909 28 HOH HOH . L 7 HOH A 10 910 34 HOH HOH . L 7 HOH A 11 911 36 HOH HOH . L 7 HOH A 12 912 40 HOH HOH . L 7 HOH A 13 913 41 HOH HOH . L 7 HOH A 14 914 43 HOH HOH . L 7 HOH A 15 915 46 HOH HOH . L 7 HOH A 16 916 48 HOH HOH . L 7 HOH A 17 917 49 HOH HOH . L 7 HOH A 18 918 52 HOH HOH . L 7 HOH A 19 919 58 HOH HOH . L 7 HOH A 20 920 61 HOH HOH . L 7 HOH A 21 921 63 HOH HOH . L 7 HOH A 22 922 69 HOH HOH . L 7 HOH A 23 923 70 HOH HOH . L 7 HOH A 24 924 71 HOH HOH . L 7 HOH A 25 925 76 HOH HOH . L 7 HOH A 26 926 84 HOH HOH . L 7 HOH A 27 927 85 HOH HOH . L 7 HOH A 28 928 86 HOH HOH . L 7 HOH A 29 929 88 HOH HOH . L 7 HOH A 30 930 89 HOH HOH . L 7 HOH A 31 931 92 HOH HOH . L 7 HOH A 32 932 93 HOH HOH . L 7 HOH A 33 933 95 HOH HOH . L 7 HOH A 34 934 97 HOH HOH . L 7 HOH A 35 935 101 HOH HOH . L 7 HOH A 36 936 103 HOH HOH . L 7 HOH A 37 937 106 HOH HOH . L 7 HOH A 38 938 108 HOH HOH . L 7 HOH A 39 939 109 HOH HOH . L 7 HOH A 40 940 111 HOH HOH . L 7 HOH A 41 941 116 HOH HOH . L 7 HOH A 42 942 117 HOH HOH . L 7 HOH A 43 943 119 HOH HOH . L 7 HOH A 44 944 120 HOH HOH . L 7 HOH A 45 945 122 HOH HOH . L 7 HOH A 46 946 123 HOH HOH . L 7 HOH A 47 947 124 HOH HOH . L 7 HOH A 48 948 125 HOH HOH . L 7 HOH A 49 949 126 HOH HOH . L 7 HOH A 50 950 132 HOH HOH . L 7 HOH A 51 951 133 HOH HOH . L 7 HOH A 52 952 134 HOH HOH . L 7 HOH A 53 953 135 HOH HOH . L 7 HOH A 54 954 136 HOH HOH . L 7 HOH A 55 955 137 HOH HOH . L 7 HOH A 56 956 138 HOH HOH . L 7 HOH A 57 957 139 HOH HOH . L 7 HOH A 58 958 140 HOH HOH . L 7 HOH A 59 959 141 HOH HOH . L 7 HOH A 60 960 142 HOH HOH . L 7 HOH A 61 961 143 HOH HOH . L 7 HOH A 62 962 144 HOH HOH . L 7 HOH A 63 963 145 HOH HOH . L 7 HOH A 64 964 146 HOH HOH . L 7 HOH A 65 965 147 HOH HOH . L 7 HOH A 66 966 148 HOH HOH . L 7 HOH A 67 967 149 HOH HOH . L 7 HOH A 68 968 150 HOH HOH . L 7 HOH A 69 969 153 HOH HOH . M 7 HOH B 1 901 2 HOH HOH . M 7 HOH B 2 902 3 HOH HOH . M 7 HOH B 3 903 5 HOH HOH . M 7 HOH B 4 904 6 HOH HOH . M 7 HOH B 5 905 7 HOH HOH . M 7 HOH B 6 906 9 HOH HOH . M 7 HOH B 7 907 10 HOH HOH . M 7 HOH B 8 908 12 HOH HOH . M 7 HOH B 9 909 14 HOH HOH . M 7 HOH B 10 910 15 HOH HOH . M 7 HOH B 11 911 16 HOH HOH . M 7 HOH B 12 912 17 HOH HOH . M 7 HOH B 13 913 18 HOH HOH . M 7 HOH B 14 914 19 HOH HOH . M 7 HOH B 15 915 20 HOH HOH . M 7 HOH B 16 916 23 HOH HOH . M 7 HOH B 17 917 24 HOH HOH . M 7 HOH B 18 918 25 HOH HOH . M 7 HOH B 19 919 26 HOH HOH . M 7 HOH B 20 920 29 HOH HOH . M 7 HOH B 21 921 30 HOH HOH . M 7 HOH B 22 922 31 HOH HOH . M 7 HOH B 23 923 32 HOH HOH . M 7 HOH B 24 924 33 HOH HOH . M 7 HOH B 25 925 35 HOH HOH . M 7 HOH B 26 926 37 HOH HOH . M 7 HOH B 27 927 38 HOH HOH . M 7 HOH B 28 928 39 HOH HOH . M 7 HOH B 29 929 42 HOH HOH . M 7 HOH B 30 930 44 HOH HOH . M 7 HOH B 31 931 45 HOH HOH . M 7 HOH B 32 932 47 HOH HOH . M 7 HOH B 33 933 50 HOH HOH . M 7 HOH B 34 934 51 HOH HOH . M 7 HOH B 35 935 53 HOH HOH . M 7 HOH B 36 936 54 HOH HOH . M 7 HOH B 37 937 55 HOH HOH . M 7 HOH B 38 938 56 HOH HOH . M 7 HOH B 39 939 57 HOH HOH . M 7 HOH B 40 940 59 HOH HOH . M 7 HOH B 41 941 60 HOH HOH . M 7 HOH B 42 942 62 HOH HOH . M 7 HOH B 43 943 64 HOH HOH . M 7 HOH B 44 944 65 HOH HOH . M 7 HOH B 45 945 66 HOH HOH . M 7 HOH B 46 946 67 HOH HOH . M 7 HOH B 47 947 68 HOH HOH . M 7 HOH B 48 948 72 HOH HOH . M 7 HOH B 49 949 73 HOH HOH . M 7 HOH B 50 950 74 HOH HOH . M 7 HOH B 51 951 75 HOH HOH . M 7 HOH B 52 952 77 HOH HOH . M 7 HOH B 53 953 78 HOH HOH . M 7 HOH B 54 954 79 HOH HOH . M 7 HOH B 55 955 80 HOH HOH . M 7 HOH B 56 956 81 HOH HOH . M 7 HOH B 57 957 82 HOH HOH . M 7 HOH B 58 958 83 HOH HOH . M 7 HOH B 59 959 87 HOH HOH . M 7 HOH B 60 960 90 HOH HOH . M 7 HOH B 61 961 91 HOH HOH . M 7 HOH B 62 962 94 HOH HOH . M 7 HOH B 63 963 96 HOH HOH . M 7 HOH B 64 964 98 HOH HOH . M 7 HOH B 65 965 99 HOH HOH . M 7 HOH B 66 966 100 HOH HOH . M 7 HOH B 67 967 102 HOH HOH . M 7 HOH B 68 968 104 HOH HOH . M 7 HOH B 69 969 105 HOH HOH . M 7 HOH B 70 970 107 HOH HOH . M 7 HOH B 71 971 110 HOH HOH . M 7 HOH B 72 972 112 HOH HOH . M 7 HOH B 73 973 113 HOH HOH . M 7 HOH B 74 974 114 HOH HOH . M 7 HOH B 75 975 115 HOH HOH . M 7 HOH B 76 976 118 HOH HOH . M 7 HOH B 77 977 121 HOH HOH . M 7 HOH B 78 978 127 HOH HOH . M 7 HOH B 79 979 128 HOH HOH . M 7 HOH B 80 980 129 HOH HOH . M 7 HOH B 81 981 130 HOH HOH . M 7 HOH B 82 982 131 HOH HOH . M 7 HOH B 83 983 151 HOH HOH . M 7 HOH B 84 984 152 HOH HOH . M 7 HOH B 85 985 154 HOH HOH . M 7 HOH B 86 986 155 HOH HOH . M 7 HOH B 87 987 156 HOH HOH . M 7 HOH B 88 988 157 HOH HOH . M 7 HOH B 89 989 158 HOH HOH . M 7 HOH B 90 990 159 HOH HOH . M 7 HOH B 91 991 160 HOH HOH . M 7 HOH B 92 992 161 HOH HOH . M 7 HOH B 93 993 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N22 1EW . . . K 4 16.197 10.301 54.311 1 55.91 ? N22 1EW 804 B 1 HETATM 2 C C22 1EW . . . K 4 17.273 9.478 54.411 1 57.48 ? C22 1EW 804 B 1 HETATM 3 C C23 1EW . . . K 4 18.513 9.808 53.843 1 59.92 ? C23 1EW 804 B 1 HETATM 4 C C24 1EW . . . K 4 19.599 8.928 53.972 1 56.43 ? C24 1EW 804 B 1 HETATM 5 C C27 1EW . . . K 4 20.938 9.268 53.363 1 59.56 ? C27 1EW 804 B 1 HETATM 6 C C25 1EW . . . K 4 19.43 7.738 54.668 1 52.46 ? C25 1EW 804 B 1 HETATM 7 N N21 1EW . . . K 4 17.15 8.308 55.08 1 56.36 ? N21 1EW 804 B 1 HETATM 8 C C26 1EW . . . K 4 18.184 7.443 55.207 1 53.32 ? C26 1EW 804 B 1 HETATM 9 C C28 1EW . . . K 4 17.964 6.168 55.969 1 53.56 ? C28 1EW 804 B 1 HETATM 10 C C29 1EW . . . K 4 17.341 5.057 55.111 1 52.62 ? C29 1EW 804 B 1 HETATM 11 C C15 1EW . . . K 4 17.267 3.838 56.005 1 56.29 ? C15 1EW 804 B 1 HETATM 12 C C14 1EW . . . K 4 18.434 3.106 56.261 1 61.45 ? C14 1EW 804 B 1 HETATM 13 C C17 1EW . . . K 4 19.789 3.398 55.636 1 65.66 ? C17 1EW 804 B 1 HETATM 14 C C18 1EW . . . K 4 19.881 2.548 54.361 1 69.94 ? C18 1EW 804 B 1 HETATM 15 C C19 1EW . . . K 4 20.29 1.086 54.626 1 72.44 ? C19 1EW 804 B 1 HETATM 16 N N20 1EW . . . K 4 19.291 0.121 54.153 1 76.23 ? N20 1EW 804 B 1 HETATM 17 C C13 1EW . . . K 4 18.376 2.003 57.088 1 59.93 ? C13 1EW 804 B 1 HETATM 18 C C12 1EW . . . K 4 17.184 1.628 57.674 1 61.05 ? C12 1EW 804 B 1 HETATM 19 C C16 1EW . . . K 4 16.05 3.48 56.626 1 55.02 ? C16 1EW 804 B 1 HETATM 20 C C11 1EW . . . K 4 16.011 2.346 57.451 1 56.72 ? C11 1EW 804 B 1 HETATM 21 C C09 1EW . . . K 4 14.793 1.804 58.188 1 50.55 ? C09 1EW 804 B 1 HETATM 22 C C08 1EW . . . K 4 13.493 1.764 57.405 1 45.14 ? C08 1EW 804 B 1 HETATM 23 C C06 1EW . . . K 4 12.411 1.051 58.251 1 39.95 ? C06 1EW 804 B 1 HETATM 24 C C05 1EW . . . K 4 11.903 1.633 59.396 1 33.94 ? C05 1EW 804 B 1 HETATM 25 N N01 1EW . . . K 4 11.93 -0.148 57.858 1 33.3 ? N01 1EW 804 B 1 HETATM 26 C C02 1EW . . . K 4 10.998 -0.799 58.543 1 31.53 ? C02 1EW 804 B 1 HETATM 27 N N02 1EW . . . K 4 10.597 -1.98 58.052 1 30.04 ? N02 1EW 804 B 1 HETATM 28 C C03 1EW . . . K 4 10.468 -0.246 59.714 1 32.28 ? C03 1EW 804 B 1 HETATM 29 C C04 1EW . . . K 4 10.939 0.997 60.143 1 33.17 ? C04 1EW 804 B 1 HETATM 30 C C07 1EW . . . K 4 10.441 1.676 61.384 1 29.27 ? C07 1EW 804 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #