data_4IMW # _model_server_result.job_id -4yGNmIninp--w0-TlapXw _model_server_result.datetime_utc '2024-11-23 09:08:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4imw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":804}' # _entry.id 4IMW # _exptl.entry_id 4IMW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 371.478 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5-bis[2-(6-amino-4-methylpyridin-2-yl)ethyl]benzonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IMW _cell.length_a 51.685 _cell.length_b 111.393 _cell.length_c 164.177 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IMW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 H ZN ZN . A ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 H ZN ZN . A ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 H ZN ZN . A ZN 806 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc5 H ZN ZN . A ZN 806 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 I FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? # _chem_comp.formula 'C23 H25 N5' _chem_comp.formula_weight 371.478 _chem_comp.id 1EV _chem_comp.mon_nstd_flag . _chem_comp.name 3,5-bis[2-(6-amino-4-methylpyridin-2-yl)ethyl]benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C04 1EV sing 1 n n C04 C03 1EV doub 2 n y C04 C05 1EV sing 3 n y C03 C02 1EV sing 4 n y C05 C06 1EV doub 5 n y C02 N02 1EV sing 6 n n C02 N01 1EV doub 7 n y C06 N01 1EV sing 8 n y C06 C08 1EV sing 9 n n C09 C08 1EV sing 10 n n C09 C13 1EV sing 11 n n C13 C14 1EV doub 12 n y C13 C12 1EV sing 13 n y C14 C15 1EV sing 14 n y C12 C11 1EV doub 15 n y C15 C29 1EV sing 16 n n C15 C16 1EV doub 17 n y C29 C28 1EV sing 18 n n C11 C16 1EV sing 19 n y C11 C10 1EV sing 20 n n C10 N10 1EV trip 21 n n C28 C26 1EV sing 22 n n N21 C26 1EV doub 23 n y N21 C22 1EV sing 24 n y C26 C25 1EV sing 25 n y N22 C22 1EV sing 26 n n C22 C23 1EV doub 27 n y C25 C24 1EV doub 28 n y C23 C24 1EV sing 29 n y C24 C27 1EV sing 30 n n C16 H1 1EV sing 31 n n C12 H2 1EV sing 32 n n C09 H3 1EV sing 33 n n C09 H4 1EV sing 34 n n C08 H5 1EV sing 35 n n C08 H6 1EV sing 36 n n N02 H7 1EV sing 37 n n N02 H8 1EV sing 38 n n C03 H9 1EV sing 39 n n C05 H10 1EV sing 40 n n C07 H11 1EV sing 41 n n C07 H12 1EV sing 42 n n C07 H13 1EV sing 43 n n C14 H14 1EV sing 44 n n C29 H15 1EV sing 45 n n C29 H16 1EV sing 46 n n C28 H17 1EV sing 47 n n C28 H18 1EV sing 48 n n N22 H19 1EV sing 49 n n N22 H20 1EV sing 50 n n C23 H21 1EV sing 51 n n C27 H22 1EV sing 52 n n C27 H23 1EV sing 53 n n C27 H24 1EV sing 54 n n C25 H25 1EV sing 55 n n # _atom_sites.entry_id 4IMW _atom_sites.fract_transf_matrix[1][1] 0.019348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 801 750 HEM HEM . D 3 H4B A 1 802 760 H4B BH4 . E 4 ACT A 1 803 860 ACT ACT . F 5 1EV A 1 804 800 1EV HH6 . G 3 H4B A 1 805 760 H4B BH4 . H 6 ZN A 1 806 900 ZN ZN . I 2 HEM B 1 801 750 HEM HEM . J 5 1EV B 1 802 800 1EV HH6 . K 4 ACT B 1 803 860 ACT ACT . L 7 HOH A 1 901 8 HOH HOH . L 7 HOH A 2 902 9 HOH HOH . L 7 HOH A 3 903 10 HOH HOH . L 7 HOH A 4 904 14 HOH HOH . L 7 HOH A 5 905 24 HOH HOH . L 7 HOH A 6 906 25 HOH HOH . L 7 HOH A 7 907 27 HOH HOH . L 7 HOH A 8 908 28 HOH HOH . L 7 HOH A 9 909 30 HOH HOH . L 7 HOH A 10 910 31 HOH HOH . L 7 HOH A 11 911 32 HOH HOH . L 7 HOH A 12 912 34 HOH HOH . L 7 HOH A 13 913 35 HOH HOH . L 7 HOH A 14 914 37 HOH HOH . L 7 HOH A 15 915 38 HOH HOH . L 7 HOH A 16 916 39 HOH HOH . L 7 HOH A 17 917 40 HOH HOH . L 7 HOH A 18 918 42 HOH HOH . L 7 HOH A 19 919 44 HOH HOH . L 7 HOH A 20 920 46 HOH HOH . L 7 HOH A 21 921 47 HOH HOH . L 7 HOH A 22 922 49 HOH HOH . L 7 HOH A 23 923 50 HOH HOH . L 7 HOH A 24 924 51 HOH HOH . L 7 HOH A 25 925 53 HOH HOH . L 7 HOH A 26 926 56 HOH HOH . L 7 HOH A 27 927 74 HOH HOH . L 7 HOH A 28 928 75 HOH HOH . L 7 HOH A 29 929 80 HOH HOH . L 7 HOH A 30 930 82 HOH HOH . L 7 HOH A 31 931 85 HOH HOH . L 7 HOH A 32 932 88 HOH HOH . L 7 HOH A 33 933 90 HOH HOH . L 7 HOH A 34 934 92 HOH HOH . L 7 HOH A 35 935 93 HOH HOH . L 7 HOH A 36 936 94 HOH HOH . L 7 HOH A 37 937 96 HOH HOH . L 7 HOH A 38 938 99 HOH HOH . L 7 HOH A 39 939 101 HOH HOH . L 7 HOH A 40 940 103 HOH HOH . L 7 HOH A 41 941 104 HOH HOH . L 7 HOH A 42 942 105 HOH HOH . L 7 HOH A 43 943 106 HOH HOH . L 7 HOH A 44 944 107 HOH HOH . L 7 HOH A 45 945 110 HOH HOH . L 7 HOH A 46 946 115 HOH HOH . L 7 HOH A 47 947 117 HOH HOH . L 7 HOH A 48 948 120 HOH HOH . L 7 HOH A 49 949 122 HOH HOH . L 7 HOH A 50 950 123 HOH HOH . L 7 HOH A 51 951 125 HOH HOH . L 7 HOH A 52 952 126 HOH HOH . L 7 HOH A 53 953 127 HOH HOH . L 7 HOH A 54 954 128 HOH HOH . L 7 HOH A 55 955 131 HOH HOH . L 7 HOH A 56 956 132 HOH HOH . L 7 HOH A 57 957 133 HOH HOH . L 7 HOH A 58 958 142 HOH HOH . L 7 HOH A 59 959 144 HOH HOH . L 7 HOH A 60 960 148 HOH HOH . L 7 HOH A 61 961 149 HOH HOH . L 7 HOH A 62 962 150 HOH HOH . L 7 HOH A 63 963 153 HOH HOH . L 7 HOH A 64 964 155 HOH HOH . L 7 HOH A 65 965 1 HOH HOH . M 7 HOH B 1 901 2 HOH HOH . M 7 HOH B 2 902 3 HOH HOH . M 7 HOH B 3 903 4 HOH HOH . M 7 HOH B 4 904 5 HOH HOH . M 7 HOH B 5 905 6 HOH HOH . M 7 HOH B 6 906 7 HOH HOH . M 7 HOH B 7 907 11 HOH HOH . M 7 HOH B 8 908 12 HOH HOH . M 7 HOH B 9 909 13 HOH HOH . M 7 HOH B 10 910 15 HOH HOH . M 7 HOH B 11 911 16 HOH HOH . M 7 HOH B 12 912 17 HOH HOH . M 7 HOH B 13 913 18 HOH HOH . M 7 HOH B 14 914 19 HOH HOH . M 7 HOH B 15 915 20 HOH HOH . M 7 HOH B 16 916 21 HOH HOH . M 7 HOH B 17 917 22 HOH HOH . M 7 HOH B 18 918 23 HOH HOH . M 7 HOH B 19 919 26 HOH HOH . M 7 HOH B 20 920 29 HOH HOH . M 7 HOH B 21 921 33 HOH HOH . M 7 HOH B 22 922 36 HOH HOH . M 7 HOH B 23 923 41 HOH HOH . M 7 HOH B 24 924 43 HOH HOH . M 7 HOH B 25 925 45 HOH HOH . M 7 HOH B 26 926 48 HOH HOH . M 7 HOH B 27 927 52 HOH HOH . M 7 HOH B 28 928 54 HOH HOH . M 7 HOH B 29 929 55 HOH HOH . M 7 HOH B 30 930 57 HOH HOH . M 7 HOH B 31 931 58 HOH HOH . M 7 HOH B 32 932 59 HOH HOH . M 7 HOH B 33 933 60 HOH HOH . M 7 HOH B 34 934 61 HOH HOH . M 7 HOH B 35 935 62 HOH HOH . M 7 HOH B 36 936 63 HOH HOH . M 7 HOH B 37 937 64 HOH HOH . M 7 HOH B 38 938 65 HOH HOH . M 7 HOH B 39 939 66 HOH HOH . M 7 HOH B 40 940 67 HOH HOH . M 7 HOH B 41 941 68 HOH HOH . M 7 HOH B 42 942 69 HOH HOH . M 7 HOH B 43 943 70 HOH HOH . M 7 HOH B 44 944 71 HOH HOH . M 7 HOH B 45 945 72 HOH HOH . M 7 HOH B 46 946 73 HOH HOH . M 7 HOH B 47 947 76 HOH HOH . M 7 HOH B 48 948 77 HOH HOH . M 7 HOH B 49 949 78 HOH HOH . M 7 HOH B 50 950 79 HOH HOH . M 7 HOH B 51 951 81 HOH HOH . M 7 HOH B 52 952 83 HOH HOH . M 7 HOH B 53 953 84 HOH HOH . M 7 HOH B 54 954 86 HOH HOH . M 7 HOH B 55 955 87 HOH HOH . M 7 HOH B 56 956 89 HOH HOH . M 7 HOH B 57 957 91 HOH HOH . M 7 HOH B 58 958 95 HOH HOH . M 7 HOH B 59 959 97 HOH HOH . M 7 HOH B 60 960 98 HOH HOH . M 7 HOH B 61 961 100 HOH HOH . M 7 HOH B 62 962 102 HOH HOH . M 7 HOH B 63 963 108 HOH HOH . M 7 HOH B 64 964 109 HOH HOH . M 7 HOH B 65 965 111 HOH HOH . M 7 HOH B 66 966 112 HOH HOH . M 7 HOH B 67 967 113 HOH HOH . M 7 HOH B 68 968 114 HOH HOH . M 7 HOH B 69 969 116 HOH HOH . M 7 HOH B 70 970 118 HOH HOH . M 7 HOH B 71 971 119 HOH HOH . M 7 HOH B 72 972 121 HOH HOH . M 7 HOH B 73 973 124 HOH HOH . M 7 HOH B 74 974 129 HOH HOH . M 7 HOH B 75 975 130 HOH HOH . M 7 HOH B 76 976 134 HOH HOH . M 7 HOH B 77 977 135 HOH HOH . M 7 HOH B 78 978 136 HOH HOH . M 7 HOH B 79 979 137 HOH HOH . M 7 HOH B 80 980 138 HOH HOH . M 7 HOH B 81 981 139 HOH HOH . M 7 HOH B 82 982 140 HOH HOH . M 7 HOH B 83 983 141 HOH HOH . M 7 HOH B 84 984 143 HOH HOH . M 7 HOH B 85 985 145 HOH HOH . M 7 HOH B 86 986 146 HOH HOH . M 7 HOH B 87 987 147 HOH HOH . M 7 HOH B 88 988 151 HOH HOH . M 7 HOH B 89 989 152 HOH HOH . M 7 HOH B 90 990 154 HOH HOH . M 7 HOH B 91 991 156 HOH HOH . M 7 HOH B 92 992 157 HOH HOH . M 7 HOH B 93 993 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N10 1EV . . . F 5 6.191 -2.662 26.846 1 73.3 ? N10 1EV 804 A 1 HETATM 2 C C10 1EV . . . F 5 6.577 -1.687 26.351 1 73.55 ? C10 1EV 804 A 1 HETATM 3 C C11 1EV . . . F 5 6.983 -0.585 25.812 1 72.52 ? C11 1EV 804 A 1 HETATM 4 C C16 1EV . . . F 5 6.213 0.573 25.926 1 72.66 ? C16 1EV 804 A 1 HETATM 5 C C12 1EV . . . F 5 8.202 -0.547 25.112 1 71.03 ? C12 1EV 804 A 1 HETATM 6 C C13 1EV . . . F 5 8.635 0.653 24.522 1 67.52 ? C13 1EV 804 A 1 HETATM 7 C C09 1EV . . . F 5 9.941 0.665 23.766 1 57.24 ? C09 1EV 804 A 1 HETATM 8 C C08 1EV . . . F 5 10.967 1.575 24.434 1 50.28 ? C08 1EV 804 A 1 HETATM 9 C C06 1EV . . . F 5 12.287 1.345 23.685 1 44.06 ? C06 1EV 804 A 1 HETATM 10 N N01 1EV . . . F 5 13.131 0.371 24.082 1 39.43 ? N01 1EV 804 A 1 HETATM 11 C C02 1EV . . . F 5 14.316 0.156 23.438 1 37.35 ? C02 1EV 804 A 1 HETATM 12 N N02 1EV . . . F 5 15.132 -0.808 23.917 1 31.28 ? N02 1EV 804 A 1 HETATM 13 C C03 1EV . . . F 5 14.653 0.895 22.299 1 34.34 ? C03 1EV 804 A 1 HETATM 14 C C04 1EV . . . F 5 13.769 1.885 21.86 1 35.47 ? C04 1EV 804 A 1 HETATM 15 C C05 1EV . . . F 5 12.599 2.1 22.549 1 38.3 ? C05 1EV 804 A 1 HETATM 16 C C07 1EV . . . F 5 14.039 2.72 20.635 1 32.14 ? C07 1EV 804 A 1 HETATM 17 C C14 1EV . . . F 5 7.841 1.816 24.636 1 70.41 ? C14 1EV 804 A 1 HETATM 18 C C15 1EV . . . F 5 6.635 1.773 25.348 1 72.05 ? C15 1EV 804 A 1 HETATM 19 C C29 1EV . . . F 5 5.784 3.018 25.479 1 72.93 ? C29 1EV 804 A 1 HETATM 20 C C28 1EV . . . F 5 5.09 3.081 26.836 1 73.05 ? C28 1EV 804 A 1 HETATM 21 C C26 1EV . . . F 5 4.345 4.39 26.988 1 73.27 ? C26 1EV 804 A 1 HETATM 22 N N21 1EV . . . F 5 5.037 5.556 26.965 1 73.73 ? N21 1EV 804 A 1 HETATM 23 C C22 1EV . . . F 5 4.456 6.77 27.104 1 73.85 ? C22 1EV 804 A 1 HETATM 24 N N22 1EV . . . F 5 5.224 7.901 27.062 1 72.17 ? N22 1EV 804 A 1 HETATM 25 C C23 1EV . . . F 5 3.069 6.821 27.282 1 74.77 ? C23 1EV 804 A 1 HETATM 26 C C24 1EV . . . F 5 2.326 5.632 27.313 1 74.76 ? C24 1EV 804 A 1 HETATM 27 C C27 1EV . . . F 5 0.834 5.675 27.505 1 75.52 ? C27 1EV 804 A 1 HETATM 28 C C25 1EV . . . F 5 2.967 4.404 27.17 1 73.63 ? C25 1EV 804 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #