data_4IN4 # _model_server_result.job_id h3zBlfClN0caURxjfB76gw _model_server_result.datetime_utc '2025-01-11 04:34:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4in4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":703}' # _entry.id 4IN4 # _exptl.entry_id 4IN4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 497.511 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-({5-[(2,4-dimethylphenyl)sulfonyl]-6-oxo-1,6-dihydropyrimidin-2-yl}sulfanyl)-N-[2-(trifluoromethyl)phenyl]acetamide _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IN4 _cell.length_a 80.604 _cell.length_b 96.509 _cell.length_c 142.462 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IN4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,R 1 1 B,J,K,L,M,N,S 2 1 C,O,P,Q,T 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 M N N ? 3 N N N ? 3 P N N ? 3 Q N N # _chem_comp.formula 'C21 H18 F3 N3 O4 S2' _chem_comp.formula_weight 497.511 _chem_comp.id 4ID _chem_comp.mon_nstd_flag . _chem_comp.name 2-({5-[(2,4-dimethylphenyl)sulfonyl]-6-oxo-1,6-dihydropyrimidin-2-yl}sulfanyl)-N-[2-(trifluoromethyl)phenyl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 4ID sing 1 n n C1 O1 4ID doub 2 n n C1 C13 4ID sing 3 n n F1 C7 4ID sing 4 n n N1 C2 4ID sing 5 n n S1 C2 4ID sing 6 n n S1 C3 4ID sing 7 n n C2 N3 4ID doub 8 n n F2 C7 4ID sing 9 n n N2 C4 4ID sing 10 n n N2 C5 4ID sing 11 n n O2 C4 4ID doub 12 n n S2 O3 4ID doub 13 n n S2 O4 4ID doub 14 n n S2 C13 4ID sing 15 n n S2 C14 4ID sing 16 n n C3 C4 4ID sing 17 n n F3 C7 4ID sing 18 n n N3 C12 4ID sing 19 n n C5 C6 4ID doub 20 n y C5 C11 4ID sing 21 n y C6 C7 4ID sing 22 n n C6 C8 4ID sing 23 n y C8 C9 4ID doub 24 n y C9 C10 4ID sing 25 n y C10 C11 4ID doub 26 n y C12 C13 4ID doub 27 n n C14 C15 4ID doub 28 n y C14 C20 4ID sing 29 n y C15 C16 4ID sing 30 n y C16 C17 4ID doub 31 n y C17 C18 4ID sing 32 n n C17 C19 4ID sing 33 n y C19 C20 4ID doub 34 n y C20 C21 4ID sing 35 n n N1 HN1 4ID sing 36 n n N2 HN2 4ID sing 37 n n C3 H3 4ID sing 38 n n C3 H3A 4ID sing 39 n n C8 H8 4ID sing 40 n n C9 H9 4ID sing 41 n n C10 H10 4ID sing 42 n n C11 H11 4ID sing 43 n n C12 H12 4ID sing 44 n n C15 H15 4ID sing 45 n n C16 H16 4ID sing 46 n n C18 H18 4ID sing 47 n n C18 H18A 4ID sing 48 n n C18 H18B 4ID sing 49 n n C19 H19 4ID sing 50 n n C21 H21 4ID sing 51 n n C21 H21A 4ID sing 52 n n C21 H21B 4ID sing 53 n n # _atom_sites.entry_id 4IN4 _atom_sites.fract_transf_matrix[1][1] 0.012406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010362 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 A 1 701 1 PO4 PO4 . E 2 PO4 A 1 702 2 PO4 PO4 . F 2 PO4 A 1 703 3 PO4 PO4 . G 2 PO4 A 1 704 3 PO4 PO4 . H 3 4ID A 1 705 3 4ID C71 . I 3 4ID A 1 706 4 4ID C71 . J 2 PO4 B 1 701 2 PO4 PO4 . K 2 PO4 B 1 702 3 PO4 PO4 . L 2 PO4 B 1 703 2 PO4 PO4 . M 3 4ID B 1 704 5 4ID C71 . N 3 4ID B 1 705 6 4ID C71 . O 2 PO4 C 1 701 1 PO4 PO4 . P 3 4ID C 1 702 1 4ID C71 . Q 3 4ID C 1 703 2 4ID C71 . R 4 HOH A 1 801 2 HOH HOH . R 4 HOH A 2 802 6 HOH HOH . R 4 HOH A 3 803 9 HOH HOH . R 4 HOH A 4 804 11 HOH HOH . R 4 HOH A 5 805 15 HOH HOH . R 4 HOH A 6 806 16 HOH HOH . R 4 HOH A 7 807 17 HOH HOH . R 4 HOH A 8 808 18 HOH HOH . R 4 HOH A 9 809 21 HOH HOH . R 4 HOH A 10 810 22 HOH HOH . R 4 HOH A 11 811 25 HOH HOH . R 4 HOH A 12 812 28 HOH HOH . R 4 HOH A 13 813 30 HOH HOH . R 4 HOH A 14 814 35 HOH HOH . R 4 HOH A 15 815 38 HOH HOH . R 4 HOH A 16 816 39 HOH HOH . R 4 HOH A 17 817 41 HOH HOH . R 4 HOH A 18 818 43 HOH HOH . R 4 HOH A 19 819 46 HOH HOH . R 4 HOH A 20 820 52 HOH HOH . R 4 HOH A 21 821 53 HOH HOH . R 4 HOH A 22 822 56 HOH HOH . R 4 HOH A 23 823 57 HOH HOH . R 4 HOH A 24 824 59 HOH HOH . R 4 HOH A 25 825 60 HOH HOH . R 4 HOH A 26 826 66 HOH HOH . R 4 HOH A 27 827 74 HOH HOH . R 4 HOH A 28 828 77 HOH HOH . R 4 HOH A 29 829 80 HOH HOH . R 4 HOH A 30 830 85 HOH HOH . R 4 HOH A 31 831 102 HOH HOH . R 4 HOH A 32 832 104 HOH HOH . R 4 HOH A 33 833 106 HOH HOH . R 4 HOH A 34 834 112 HOH HOH . R 4 HOH A 35 835 121 HOH HOH . R 4 HOH A 36 836 124 HOH HOH . R 4 HOH A 37 837 125 HOH HOH . R 4 HOH A 38 838 126 HOH HOH . R 4 HOH A 39 839 135 HOH HOH . R 4 HOH A 40 840 136 HOH HOH . R 4 HOH A 41 841 143 HOH HOH . R 4 HOH A 42 842 144 HOH HOH . R 4 HOH A 43 843 145 HOH HOH . R 4 HOH A 44 844 149 HOH HOH . R 4 HOH A 45 845 153 HOH HOH . R 4 HOH A 46 846 160 HOH HOH . R 4 HOH A 47 847 164 HOH HOH . R 4 HOH A 48 848 173 HOH HOH . R 4 HOH A 49 849 192 HOH HOH . R 4 HOH A 50 850 194 HOH HOH . R 4 HOH A 51 851 199 HOH HOH . R 4 HOH A 52 852 202 HOH HOH . R 4 HOH A 53 853 206 HOH HOH . R 4 HOH A 54 854 215 HOH HOH . R 4 HOH A 55 855 228 HOH HOH . R 4 HOH A 56 856 231 HOH HOH . R 4 HOH A 57 857 244 HOH HOH . R 4 HOH A 58 858 261 HOH HOH . R 4 HOH A 59 859 274 HOH HOH . R 4 HOH A 60 860 279 HOH HOH . R 4 HOH A 61 861 290 HOH HOH . R 4 HOH A 62 862 295 HOH HOH . R 4 HOH A 63 863 299 HOH HOH . R 4 HOH A 64 864 360 HOH HOH . S 4 HOH B 1 801 5 HOH HOH . S 4 HOH B 2 802 8 HOH HOH . S 4 HOH B 3 803 10 HOH HOH . S 4 HOH B 4 804 19 HOH HOH . S 4 HOH B 5 805 27 HOH HOH . S 4 HOH B 6 806 29 HOH HOH . S 4 HOH B 7 807 31 HOH HOH . S 4 HOH B 8 808 49 HOH HOH . S 4 HOH B 9 809 62 HOH HOH . S 4 HOH B 10 810 67 HOH HOH . S 4 HOH B 11 811 69 HOH HOH . S 4 HOH B 12 812 73 HOH HOH . S 4 HOH B 13 813 75 HOH HOH . S 4 HOH B 14 814 78 HOH HOH . S 4 HOH B 15 815 79 HOH HOH . S 4 HOH B 16 816 84 HOH HOH . S 4 HOH B 17 817 87 HOH HOH . S 4 HOH B 18 818 90 HOH HOH . S 4 HOH B 19 819 97 HOH HOH . S 4 HOH B 20 820 99 HOH HOH . S 4 HOH B 21 821 101 HOH HOH . S 4 HOH B 22 822 103 HOH HOH . S 4 HOH B 23 823 107 HOH HOH . S 4 HOH B 24 824 109 HOH HOH . S 4 HOH B 25 825 111 HOH HOH . S 4 HOH B 26 826 114 HOH HOH . S 4 HOH B 27 827 115 HOH HOH . S 4 HOH B 28 828 116 HOH HOH . S 4 HOH B 29 829 118 HOH HOH . S 4 HOH B 30 830 128 HOH HOH . S 4 HOH B 31 831 133 HOH HOH . S 4 HOH B 32 832 154 HOH HOH . S 4 HOH B 33 833 157 HOH HOH . S 4 HOH B 34 834 177 HOH HOH . S 4 HOH B 35 835 184 HOH HOH . S 4 HOH B 36 836 198 HOH HOH . S 4 HOH B 37 837 200 HOH HOH . S 4 HOH B 38 838 203 HOH HOH . S 4 HOH B 39 839 219 HOH HOH . S 4 HOH B 40 840 229 HOH HOH . S 4 HOH B 41 841 237 HOH HOH . S 4 HOH B 42 842 243 HOH HOH . S 4 HOH B 43 843 251 HOH HOH . S 4 HOH B 44 844 256 HOH HOH . S 4 HOH B 45 845 269 HOH HOH . S 4 HOH B 46 846 271 HOH HOH . S 4 HOH B 47 847 286 HOH HOH . S 4 HOH B 48 848 318 HOH HOH . S 4 HOH B 49 849 320 HOH HOH . S 4 HOH B 50 850 333 HOH HOH . T 4 HOH C 1 801 1 HOH HOH . T 4 HOH C 2 802 3 HOH HOH . T 4 HOH C 3 803 7 HOH HOH . T 4 HOH C 4 804 12 HOH HOH . T 4 HOH C 5 805 13 HOH HOH . T 4 HOH C 6 806 26 HOH HOH . T 4 HOH C 7 807 33 HOH HOH . T 4 HOH C 8 808 42 HOH HOH . T 4 HOH C 9 809 51 HOH HOH . T 4 HOH C 10 810 54 HOH HOH . T 4 HOH C 11 811 55 HOH HOH . T 4 HOH C 12 812 61 HOH HOH . T 4 HOH C 13 813 63 HOH HOH . T 4 HOH C 14 814 83 HOH HOH . T 4 HOH C 15 815 88 HOH HOH . T 4 HOH C 16 816 91 HOH HOH . T 4 HOH C 17 817 93 HOH HOH . T 4 HOH C 18 818 105 HOH HOH . T 4 HOH C 19 819 110 HOH HOH . T 4 HOH C 20 820 117 HOH HOH . T 4 HOH C 21 821 119 HOH HOH . T 4 HOH C 22 822 120 HOH HOH . T 4 HOH C 23 823 127 HOH HOH . T 4 HOH C 24 824 129 HOH HOH . T 4 HOH C 25 825 132 HOH HOH . T 4 HOH C 26 826 138 HOH HOH . T 4 HOH C 27 827 142 HOH HOH . T 4 HOH C 28 828 146 HOH HOH . T 4 HOH C 29 829 147 HOH HOH . T 4 HOH C 30 830 151 HOH HOH . T 4 HOH C 31 831 156 HOH HOH . T 4 HOH C 32 832 162 HOH HOH . T 4 HOH C 33 833 167 HOH HOH . T 4 HOH C 34 834 170 HOH HOH . T 4 HOH C 35 835 182 HOH HOH . T 4 HOH C 36 836 185 HOH HOH . T 4 HOH C 37 837 188 HOH HOH . T 4 HOH C 38 838 193 HOH HOH . T 4 HOH C 39 839 196 HOH HOH . T 4 HOH C 40 840 217 HOH HOH . T 4 HOH C 41 841 218 HOH HOH . T 4 HOH C 42 842 235 HOH HOH . T 4 HOH C 43 843 238 HOH HOH . T 4 HOH C 44 844 239 HOH HOH . T 4 HOH C 45 845 258 HOH HOH . T 4 HOH C 46 846 262 HOH HOH . T 4 HOH C 47 847 277 HOH HOH . T 4 HOH C 48 848 289 HOH HOH . T 4 HOH C 49 849 347 HOH HOH . T 4 HOH C 50 850 358 HOH HOH . T 4 HOH C 51 851 362 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4ID . . . Q 3 38.991 -23.005 41.559 1 27.26 ? C1 4ID 703 C 1 HETATM 2 F F1 4ID . . . Q 3 36.002 -21.256 39.916 1 20.73 ? F1 4ID 703 C 1 HETATM 3 N N1 4ID . . . Q 3 38.288 -23.612 40.617 1 26.38 ? N1 4ID 703 C 1 HETATM 4 O O1 4ID . . . Q 3 40.044 -22.446 41.173 1 24.91 ? O1 4ID 703 C 1 HETATM 5 S S1 4ID . . . Q 3 36.28 -24.94 39.578 1 27.06 ? S1 4ID 703 C 1 HETATM 6 C C2 4ID . . . Q 3 37.137 -24.238 40.866 1 25.95 ? C2 4ID 703 C 1 HETATM 7 F F2 4ID . . . Q 3 36.404 -19.211 40.325 1 22.81 ? F2 4ID 703 C 1 HETATM 8 N N2 4ID . . . Q 3 37.322 -22.472 37.911 1 24.69 ? N2 4ID 703 C 1 HETATM 9 O O2 4ID . . . Q 3 37.38 -23.765 36.042 1 24.06 ? O2 4ID 703 C 1 HETATM 10 S S2 4ID . . . Q 3 39.186 -22.295 44.22 1 29.35 ? S2 4ID 703 C 1 HETATM 11 C C3 4ID . . . Q 3 37.284 -24.933 38.08 1 25.17 ? C3 4ID 703 C 1 HETATM 12 F F3 4ID . . . Q 3 38.006 -20.574 40.263 1 21.55 ? F3 4ID 703 C 1 HETATM 13 N N3 4ID . . . Q 3 36.631 -24.279 42.11 1 26.59 ? N3 4ID 703 C 1 HETATM 14 O O3 4ID . . . Q 3 40.229 -23.091 44.787 1 30.43 ? O3 4ID 703 C 1 HETATM 15 C C4 4ID . . . Q 3 37.338 -23.651 37.253 1 24.71 ? C4 4ID 703 C 1 HETATM 16 O O4 4ID . . . Q 3 38.192 -22.124 45.242 1 35.94 ? O4 4ID 703 C 1 HETATM 17 C C5 4ID . . . Q 3 37.331 -21.205 37.401 1 23.76 ? C5 4ID 703 C 1 HETATM 18 C C6 4ID . . . Q 3 37.089 -20.104 38.256 1 22.43 ? C6 4ID 703 C 1 HETATM 19 C C7 4ID . . . Q 3 36.864 -20.29 39.726 1 21.66 ? C7 4ID 703 C 1 HETATM 20 C C8 4ID . . . Q 3 37.044 -18.797 37.766 1 22.8 ? C8 4ID 703 C 1 HETATM 21 C C9 4ID . . . Q 3 37.241 -18.564 36.412 1 23.6 ? C9 4ID 703 C 1 HETATM 22 C C10 4ID . . . Q 3 37.476 -19.636 35.557 1 23.39 ? C10 4ID 703 C 1 HETATM 23 C C11 4ID . . . Q 3 37.529 -20.955 36.04 1 23.62 ? C11 4ID 703 C 1 HETATM 24 C C12 4ID . . . Q 3 37.259 -23.693 43.15 1 28.18 ? C12 4ID 703 C 1 HETATM 25 C C13 4ID . . . Q 3 38.474 -23.032 42.972 1 28.92 ? C13 4ID 703 C 1 HETATM 26 C C14 4ID . . . Q 3 39.709 -20.91 43.658 1 26.68 ? C14 4ID 703 C 1 HETATM 27 C C15 4ID . . . Q 3 41.074 -20.77 43.525 1 28.2 ? C15 4ID 703 C 1 HETATM 28 C C16 4ID . . . Q 3 41.643 -19.625 43.005 1 29.51 ? C16 4ID 703 C 1 HETATM 29 C C17 4ID . . . Q 3 40.809 -18.597 42.609 1 30.87 ? C17 4ID 703 C 1 HETATM 30 C C18 4ID . . . Q 3 41.487 -17.368 42.057 1 35.78 ? C18 4ID 703 C 1 HETATM 31 C C19 4ID . . . Q 3 39.413 -18.712 42.72 1 27.84 ? C19 4ID 703 C 1 HETATM 32 C C20 4ID . . . Q 3 38.867 -19.897 43.239 1 27.3 ? C20 4ID 703 C 1 HETATM 33 C C21 4ID . . . Q 3 37.364 -20.025 43.358 1 27.53 ? C21 4ID 703 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #