data_4IN5 # _model_server_result.job_id jpg8GjLDnmlXyzjDuIJ81g _model_server_result.datetime_utc '2024-11-05 04:01:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4in5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"FA","auth_seq_id":303}' # _entry.id 4IN5 # _exptl.entry_id 4IN5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IN5 _cell.length_a 139.109 _cell.length_b 139.109 _cell.length_c 184.692 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IN5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 K N N ? 10 L N N ? 10 M N N ? 10 N N N ? 10 O N N ? 10 Q N N ? 10 AA N N ? 10 DA N N ? 10 EA N N ? 10 FA N N ? 10 HA N N ? 10 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 191 L HIS 190 1_555 V FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc2 A NE2 HIS 231 L HIS 230 1_555 V FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc3 B NE2 HIS 220 M HIS 219 1_555 V FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc4 B OE2 GLU 235 M GLU 234 1_555 V FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc5 B OE1 GLU 235 M GLU 234 1_555 V FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc6 B NE2 HIS 267 M HIS 266 1_555 V FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc7 C O MET 140 H MET 134 1_555 IA K K . H K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc8 C O ALA 143 H ALA 137 1_555 IA K K . H K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc9 C O PHE 146 H PHE 140 1_555 IA K K . H K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc10 IA K K . H K 306 1_555 OA O HOH . H HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc11 IA K K . H K 306 1_555 OA O HOH . H HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 423 n n C1 C2 GOL sing 424 n n C1 H11 GOL sing 425 n n C1 H12 GOL sing 426 n n O1 HO1 GOL sing 427 n n C2 O2 GOL sing 428 n n C2 C3 GOL sing 429 n n C2 H2 GOL sing 430 n n O2 HO2 GOL sing 431 n n C3 O3 GOL sing 432 n n C3 H31 GOL sing 433 n n C3 H32 GOL sing 434 n n O3 HO3 GOL sing 435 n n # _atom_sites.entry_id 4IN5 _atom_sites.fract_transf_matrix[1][1] 0.007189 _atom_sites.fract_transf_matrix[1][2] 0.00415 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008301 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA L 1 301 301 LDA LDA . E 4 LDA L 1 302 302 LDA LDA . F 5 BPH L 1 303 303 BPH BPH . G 6 U10 L 1 304 304 U10 U10 . H 7 BCL L 1 305 305 BCL BCL . I 8 PO4 L 1 306 306 PO4 PO4 . J 9 HTO L 1 307 307 HTO HTO . K 10 GOL L 1 308 308 GOL GOL . L 10 GOL L 1 309 309 GOL GOL . M 10 GOL L 1 310 310 GOL GOL . N 10 GOL L 1 311 311 GOL GOL . O 10 GOL L 1 312 312 GOL GOL . P 5 BPH L 1 313 406 BPH BPH . Q 10 GOL L 1 314 306 GOL GOL . R 7 BCL M 1 401 401 BCL BCL . S 7 BCL M 1 402 402 BCL BCL . T 7 BCL M 1 403 403 BCL BCL . U 4 LDA M 1 404 404 LDA LDA . V 11 FE M 1 405 405 FE FE . W 6 U10 M 1 406 407 U10 U10 . X 12 SPO M 1 407 408 SPO SPO . Y 13 PC1 M 1 408 409 PC1 PC1 . Z 8 PO4 M 1 409 410 PO4 PO4 . AA 10 GOL M 1 410 411 GOL GOL . BA 8 PO4 M 1 411 412 PO4 PO4 . CA 4 LDA M 1 412 413 LDA LDA . DA 10 GOL H 1 301 301 GOL GOL . EA 10 GOL H 1 302 302 GOL GOL . FA 10 GOL H 1 303 303 GOL GOL . GA 4 LDA H 1 304 304 LDA LDA . HA 10 GOL H 1 305 305 GOL GOL . IA 14 K H 1 306 307 K K . JA 10 GOL H 1 307 308 GOL GOL . KA 9 HTO H 1 308 309 HTO HTO . LA 4 LDA H 1 309 310 LDA LDA . MA 15 HOH L 1 401 401 HOH HOH . MA 15 HOH L 2 402 402 HOH HOH . MA 15 HOH L 3 403 403 HOH HOH . MA 15 HOH L 4 404 404 HOH HOH . MA 15 HOH L 5 405 405 HOH HOH . MA 15 HOH L 6 406 406 HOH HOH . MA 15 HOH L 7 407 407 HOH HOH . MA 15 HOH L 8 408 408 HOH HOH . MA 15 HOH L 9 409 409 HOH HOH . MA 15 HOH L 10 410 410 HOH HOH . MA 15 HOH L 11 411 411 HOH HOH . MA 15 HOH L 12 412 412 HOH HOH . MA 15 HOH L 13 413 413 HOH HOH . MA 15 HOH L 14 414 414 HOH HOH . MA 15 HOH L 15 415 415 HOH HOH . MA 15 HOH L 16 416 416 HOH HOH . MA 15 HOH L 17 417 417 HOH HOH . MA 15 HOH L 18 418 418 HOH HOH . MA 15 HOH L 19 419 419 HOH HOH . MA 15 HOH L 20 420 420 HOH HOH . MA 15 HOH L 21 421 421 HOH HOH . MA 15 HOH L 22 422 422 HOH HOH . MA 15 HOH L 23 423 423 HOH HOH . MA 15 HOH L 24 424 424 HOH HOH . MA 15 HOH L 25 425 425 HOH HOH . MA 15 HOH L 26 426 426 HOH HOH . MA 15 HOH L 27 427 427 HOH HOH . MA 15 HOH L 28 428 428 HOH HOH . MA 15 HOH L 29 429 429 HOH HOH . MA 15 HOH L 30 430 430 HOH HOH . MA 15 HOH L 31 431 431 HOH HOH . MA 15 HOH L 32 432 432 HOH HOH . MA 15 HOH L 33 433 433 HOH HOH . MA 15 HOH L 34 434 434 HOH HOH . MA 15 HOH L 35 435 435 HOH HOH . MA 15 HOH L 36 436 436 HOH HOH . MA 15 HOH L 37 437 437 HOH HOH . MA 15 HOH L 38 438 438 HOH HOH . MA 15 HOH L 39 439 439 HOH HOH . MA 15 HOH L 40 440 440 HOH HOH . MA 15 HOH L 41 441 441 HOH HOH . MA 15 HOH L 42 442 442 HOH HOH . MA 15 HOH L 43 443 443 HOH HOH . MA 15 HOH L 44 444 444 HOH HOH . MA 15 HOH L 45 445 445 HOH HOH . MA 15 HOH L 46 446 446 HOH HOH . MA 15 HOH L 47 447 447 HOH HOH . MA 15 HOH L 48 448 527 HOH HOH . MA 15 HOH L 49 449 547 HOH HOH . MA 15 HOH L 50 450 411 HOH HOH . MA 15 HOH L 51 451 416 HOH HOH . MA 15 HOH L 52 452 434 HOH HOH . MA 15 HOH L 53 453 442 HOH HOH . MA 15 HOH L 54 454 451 HOH HOH . MA 15 HOH L 55 455 481 HOH HOH . MA 15 HOH L 56 456 482 HOH HOH . NA 15 HOH M 1 501 501 HOH HOH . NA 15 HOH M 2 502 502 HOH HOH . NA 15 HOH M 3 503 503 HOH HOH . NA 15 HOH M 4 504 504 HOH HOH . NA 15 HOH M 5 505 505 HOH HOH . NA 15 HOH M 6 506 506 HOH HOH . NA 15 HOH M 7 507 507 HOH HOH . NA 15 HOH M 8 508 508 HOH HOH . NA 15 HOH M 9 509 509 HOH HOH . NA 15 HOH M 10 510 510 HOH HOH . NA 15 HOH M 11 511 511 HOH HOH . NA 15 HOH M 12 512 512 HOH HOH . NA 15 HOH M 13 513 513 HOH HOH . NA 15 HOH M 14 514 514 HOH HOH . NA 15 HOH M 15 515 515 HOH HOH . NA 15 HOH M 16 516 516 HOH HOH . NA 15 HOH M 17 517 517 HOH HOH . NA 15 HOH M 18 518 518 HOH HOH . NA 15 HOH M 19 519 519 HOH HOH . NA 15 HOH M 20 520 520 HOH HOH . NA 15 HOH M 21 521 521 HOH HOH . NA 15 HOH M 22 522 522 HOH HOH . NA 15 HOH M 23 523 523 HOH HOH . NA 15 HOH M 24 524 524 HOH HOH . NA 15 HOH M 25 525 525 HOH HOH . NA 15 HOH M 26 526 526 HOH HOH . NA 15 HOH M 27 527 528 HOH HOH . NA 15 HOH M 28 528 529 HOH HOH . NA 15 HOH M 29 529 530 HOH HOH . NA 15 HOH M 30 530 531 HOH HOH . NA 15 HOH M 31 531 532 HOH HOH . NA 15 HOH M 32 532 533 HOH HOH . NA 15 HOH M 33 533 534 HOH HOH . NA 15 HOH M 34 534 535 HOH HOH . NA 15 HOH M 35 535 536 HOH HOH . NA 15 HOH M 36 536 537 HOH HOH . NA 15 HOH M 37 537 539 HOH HOH . NA 15 HOH M 38 538 540 HOH HOH . NA 15 HOH M 39 539 541 HOH HOH . NA 15 HOH M 40 540 542 HOH HOH . NA 15 HOH M 41 541 543 HOH HOH . NA 15 HOH M 42 542 544 HOH HOH . NA 15 HOH M 43 543 545 HOH HOH . NA 15 HOH M 44 544 546 HOH HOH . NA 15 HOH M 45 545 548 HOH HOH . NA 15 HOH M 46 546 549 HOH HOH . NA 15 HOH M 47 547 550 HOH HOH . NA 15 HOH M 48 548 551 HOH HOH . NA 15 HOH M 49 549 552 HOH HOH . NA 15 HOH M 50 550 553 HOH HOH . NA 15 HOH M 51 551 554 HOH HOH . NA 15 HOH M 52 552 555 HOH HOH . NA 15 HOH M 53 553 556 HOH HOH . OA 15 HOH H 1 401 538 HOH HOH . OA 15 HOH H 2 402 401 HOH HOH . OA 15 HOH H 3 403 402 HOH HOH . OA 15 HOH H 4 404 403 HOH HOH . OA 15 HOH H 5 405 404 HOH HOH . OA 15 HOH H 6 406 405 HOH HOH . OA 15 HOH H 7 407 406 HOH HOH . OA 15 HOH H 8 408 407 HOH HOH . OA 15 HOH H 9 409 408 HOH HOH . OA 15 HOH H 10 410 409 HOH HOH . OA 15 HOH H 11 411 410 HOH HOH . OA 15 HOH H 12 412 412 HOH HOH . OA 15 HOH H 13 413 413 HOH HOH . OA 15 HOH H 14 414 414 HOH HOH . OA 15 HOH H 15 415 415 HOH HOH . OA 15 HOH H 16 416 417 HOH HOH . OA 15 HOH H 17 417 418 HOH HOH . OA 15 HOH H 18 418 419 HOH HOH . OA 15 HOH H 19 419 420 HOH HOH . OA 15 HOH H 20 420 421 HOH HOH . OA 15 HOH H 21 421 422 HOH HOH . OA 15 HOH H 22 422 423 HOH HOH . OA 15 HOH H 23 423 424 HOH HOH . OA 15 HOH H 24 424 425 HOH HOH . OA 15 HOH H 25 425 426 HOH HOH . OA 15 HOH H 26 426 427 HOH HOH . OA 15 HOH H 27 427 428 HOH HOH . OA 15 HOH H 28 428 429 HOH HOH . OA 15 HOH H 29 429 430 HOH HOH . OA 15 HOH H 30 430 431 HOH HOH . OA 15 HOH H 31 431 432 HOH HOH . OA 15 HOH H 32 432 433 HOH HOH . OA 15 HOH H 33 433 435 HOH HOH . OA 15 HOH H 34 434 436 HOH HOH . OA 15 HOH H 35 435 437 HOH HOH . OA 15 HOH H 36 436 438 HOH HOH . OA 15 HOH H 37 437 439 HOH HOH . OA 15 HOH H 38 438 440 HOH HOH . OA 15 HOH H 39 439 441 HOH HOH . OA 15 HOH H 40 440 443 HOH HOH . OA 15 HOH H 41 441 444 HOH HOH . OA 15 HOH H 42 442 445 HOH HOH . OA 15 HOH H 43 443 446 HOH HOH . OA 15 HOH H 44 444 447 HOH HOH . OA 15 HOH H 45 445 448 HOH HOH . OA 15 HOH H 46 446 449 HOH HOH . OA 15 HOH H 47 447 450 HOH HOH . OA 15 HOH H 48 448 452 HOH HOH . OA 15 HOH H 49 449 453 HOH HOH . OA 15 HOH H 50 450 454 HOH HOH . OA 15 HOH H 51 451 455 HOH HOH . OA 15 HOH H 52 452 456 HOH HOH . OA 15 HOH H 53 453 457 HOH HOH . OA 15 HOH H 54 454 458 HOH HOH . OA 15 HOH H 55 455 459 HOH HOH . OA 15 HOH H 56 456 460 HOH HOH . OA 15 HOH H 57 457 461 HOH HOH . OA 15 HOH H 58 458 462 HOH HOH . OA 15 HOH H 59 459 463 HOH HOH . OA 15 HOH H 60 460 464 HOH HOH . OA 15 HOH H 61 461 465 HOH HOH . OA 15 HOH H 62 462 466 HOH HOH . OA 15 HOH H 63 463 467 HOH HOH . OA 15 HOH H 64 464 468 HOH HOH . OA 15 HOH H 65 465 469 HOH HOH . OA 15 HOH H 66 466 470 HOH HOH . OA 15 HOH H 67 467 471 HOH HOH . OA 15 HOH H 68 468 472 HOH HOH . OA 15 HOH H 69 469 473 HOH HOH . OA 15 HOH H 70 470 474 HOH HOH . OA 15 HOH H 71 471 475 HOH HOH . OA 15 HOH H 72 472 476 HOH HOH . OA 15 HOH H 73 473 477 HOH HOH . OA 15 HOH H 74 474 478 HOH HOH . OA 15 HOH H 75 475 479 HOH HOH . OA 15 HOH H 76 476 480 HOH HOH . OA 15 HOH H 77 477 483 HOH HOH . OA 15 HOH H 78 478 484 HOH HOH . OA 15 HOH H 79 479 485 HOH HOH . OA 15 HOH H 80 480 486 HOH HOH . OA 15 HOH H 81 481 487 HOH HOH . OA 15 HOH H 82 482 488 HOH HOH . OA 15 HOH H 83 483 489 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . FA 10 17.611 98.392 16.618 1 83.06 ? C1 GOL 303 H 1 HETATM 2 O O1 GOL . . . FA 10 16.52 97.641 17.18 1 78.78 ? O1 GOL 303 H 1 HETATM 3 C C2 GOL . . . FA 10 17.461 99.918 16.713 1 83.62 ? C2 GOL 303 H 1 HETATM 4 O O2 GOL . . . FA 10 17.967 100.393 17.971 1 83.35 ? O2 GOL 303 H 1 HETATM 5 C C3 GOL . . . FA 10 18.224 100.609 15.566 1 80.72 ? C3 GOL 303 H 1 HETATM 6 O O3 GOL . . . FA 10 18.73 101.888 15.964 1 73.43 ? O3 GOL 303 H 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #