data_4IN6 # _model_server_result.job_id FnryVlSbxI5v7vC6f0uPqQ _model_server_result.datetime_utc '2024-11-24 01:47:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4in6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":309}' # _entry.id 4IN6 # _exptl.entry_id 4IN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IN6 _cell.length_a 139.028 _cell.length_b 139.028 _cell.length_c 184.345 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 I N N ? 9 J N N ? 9 L N N ? 9 N N N ? 9 O N N ? 9 P N N ? 9 EA N N ? 9 FA N N ? 9 HA N N ? 9 IA N N ? 9 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 U FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 U FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc3 B NE2 HIS 219 M HIS 219 1_555 U FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc4 B OE2 GLU 234 M GLU 234 1_555 U FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc5 B OE1 GLU 234 M GLU 234 1_555 U FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc6 B NE2 HIS 266 M HIS 266 1_555 U FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 840 n n C1 C2 GOL sing 841 n n C1 H11 GOL sing 842 n n C1 H12 GOL sing 843 n n O1 HO1 GOL sing 844 n n C2 O2 GOL sing 845 n n C2 C3 GOL sing 846 n n C2 H2 GOL sing 847 n n O2 HO2 GOL sing 848 n n C3 O3 GOL sing 849 n n C3 H31 GOL sing 850 n n C3 H32 GOL sing 851 n n O3 HO3 GOL sing 852 n n # _atom_sites.entry_id 4IN6 _atom_sites.fract_transf_matrix[1][1] 0.007193 _atom_sites.fract_transf_matrix[1][2] 0.004153 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BPH L 1 301 302 BPH BPH . E 5 U10 L 1 302 303 U10 U10 . F 6 BCL L 1 303 304 BCL BCL . G 7 PO4 L 1 304 305 PO4 PO4 . H 8 HTO L 1 305 306 HTO HTO . I 9 GOL L 1 306 307 GOL GOL . J 9 GOL L 1 307 308 GOL GOL . K 6 BCL L 1 308 301 BCL BCL . L 9 GOL L 1 309 309 GOL GOL . M 7 PO4 L 1 310 310 PO4 PO4 . N 9 GOL L 1 311 311 GOL GOL . O 9 GOL L 1 312 312 GOL GOL . P 9 GOL L 1 313 313 GOL GOL . Q 6 BCL M 1 401 401 BCL BCL . R 6 BCL M 1 402 402 BCL BCL . S 10 LDA M 1 403 403 LDA LDA . T 10 LDA M 1 404 404 LDA LDA . U 11 FE M 1 405 405 FE FE . V 4 BPH M 1 406 406 BPH BPH . W 5 U10 M 1 407 407 U10 U10 . X 12 SPO M 1 408 408 SPO SPO . Y 13 CDL M 1 409 409 CDL CDL . Z 14 PC1 M 1 410 410 PC1 PC1 . AA 7 PO4 M 1 411 411 PO4 PO4 . BA 7 PO4 M 1 412 412 PO4 PO4 . CA 10 LDA M 1 413 413 LDA LDA . DA 15 GGD H 1 301 314 GGD GGD . EA 9 GOL H 1 302 301 GOL GOL . FA 9 GOL H 1 303 302 GOL GOL . GA 7 PO4 H 1 304 303 PO4 PO4 . HA 9 GOL H 1 305 304 GOL GOL . IA 9 GOL H 1 306 305 GOL GOL . JA 9 GOL H 1 307 306 GOL GOL . KA 16 HOH L 1 401 401 HOH HOH . KA 16 HOH L 2 402 402 HOH HOH . KA 16 HOH L 3 403 403 HOH HOH . KA 16 HOH L 4 404 404 HOH HOH . KA 16 HOH L 5 405 405 HOH HOH . KA 16 HOH L 6 406 407 HOH HOH . KA 16 HOH L 7 407 408 HOH HOH . KA 16 HOH L 8 408 409 HOH HOH . KA 16 HOH L 9 409 410 HOH HOH . KA 16 HOH L 10 410 411 HOH HOH . KA 16 HOH L 11 411 412 HOH HOH . KA 16 HOH L 12 412 413 HOH HOH . KA 16 HOH L 13 413 414 HOH HOH . KA 16 HOH L 14 414 415 HOH HOH . KA 16 HOH L 15 415 416 HOH HOH . KA 16 HOH L 16 416 417 HOH HOH . KA 16 HOH L 17 417 418 HOH HOH . KA 16 HOH L 18 418 419 HOH HOH . KA 16 HOH L 19 419 420 HOH HOH . KA 16 HOH L 20 420 421 HOH HOH . KA 16 HOH L 21 421 422 HOH HOH . KA 16 HOH L 22 422 423 HOH HOH . KA 16 HOH L 23 423 424 HOH HOH . KA 16 HOH L 24 424 425 HOH HOH . KA 16 HOH L 25 425 426 HOH HOH . KA 16 HOH L 26 426 509 HOH HOH . KA 16 HOH L 27 427 511 HOH HOH . KA 16 HOH L 28 428 414 HOH HOH . LA 16 HOH M 1 501 406 HOH HOH . LA 16 HOH M 2 502 501 HOH HOH . LA 16 HOH M 3 503 502 HOH HOH . LA 16 HOH M 4 504 503 HOH HOH . LA 16 HOH M 5 505 504 HOH HOH . LA 16 HOH M 6 506 505 HOH HOH . LA 16 HOH M 7 507 506 HOH HOH . LA 16 HOH M 8 508 507 HOH HOH . LA 16 HOH M 9 509 508 HOH HOH . LA 16 HOH M 10 510 510 HOH HOH . LA 16 HOH M 11 511 512 HOH HOH . LA 16 HOH M 12 512 513 HOH HOH . LA 16 HOH M 13 513 514 HOH HOH . LA 16 HOH M 14 514 515 HOH HOH . LA 16 HOH M 15 515 516 HOH HOH . LA 16 HOH M 16 516 519 HOH HOH . LA 16 HOH M 17 517 520 HOH HOH . LA 16 HOH M 18 518 521 HOH HOH . LA 16 HOH M 19 519 522 HOH HOH . LA 16 HOH M 20 520 523 HOH HOH . LA 16 HOH M 21 521 524 HOH HOH . LA 16 HOH M 22 522 525 HOH HOH . MA 16 HOH H 1 401 517 HOH HOH . MA 16 HOH H 2 402 518 HOH HOH . MA 16 HOH H 3 403 401 HOH HOH . MA 16 HOH H 4 404 402 HOH HOH . MA 16 HOH H 5 405 403 HOH HOH . MA 16 HOH H 6 406 404 HOH HOH . MA 16 HOH H 7 407 405 HOH HOH . MA 16 HOH H 8 408 406 HOH HOH . MA 16 HOH H 9 409 407 HOH HOH . MA 16 HOH H 10 410 408 HOH HOH . MA 16 HOH H 11 411 409 HOH HOH . MA 16 HOH H 12 412 410 HOH HOH . MA 16 HOH H 13 413 411 HOH HOH . MA 16 HOH H 14 414 412 HOH HOH . MA 16 HOH H 15 415 413 HOH HOH . MA 16 HOH H 16 416 415 HOH HOH . MA 16 HOH H 17 417 416 HOH HOH . MA 16 HOH H 18 418 417 HOH HOH . MA 16 HOH H 19 419 418 HOH HOH . MA 16 HOH H 20 420 419 HOH HOH . MA 16 HOH H 21 421 420 HOH HOH . MA 16 HOH H 22 422 421 HOH HOH . MA 16 HOH H 23 423 422 HOH HOH . MA 16 HOH H 24 424 423 HOH HOH . MA 16 HOH H 25 425 424 HOH HOH . MA 16 HOH H 26 426 425 HOH HOH . MA 16 HOH H 27 427 426 HOH HOH . MA 16 HOH H 28 428 427 HOH HOH . MA 16 HOH H 29 429 428 HOH HOH . MA 16 HOH H 30 430 429 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 9 15.837 101.163 22.15 1 83.2 ? C1 GOL 309 L 1 HETATM 2 O O1 GOL . . . L 9 16.796 102.223 21.974 1 83.15 ? O1 GOL 309 L 1 HETATM 3 C C2 GOL . . . L 9 14.942 101.054 20.92 1 78.9 ? C2 GOL 309 L 1 HETATM 4 O O2 GOL . . . L 9 15.784 101.288 19.776 1 81.67 ? O2 GOL 309 L 1 HETATM 5 C C3 GOL . . . L 9 14.199 99.701 20.837 1 81.45 ? C3 GOL 309 L 1 HETATM 6 O O3 GOL . . . L 9 14.933 98.552 21.347 1 74.65 ? O3 GOL 309 L 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #