data_4IN6 # _model_server_result.job_id D1S1IFfy2c9koaYzsOdXOw _model_server_result.datetime_utc '2024-11-06 00:05:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4in6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":408}' # _entry.id 4IN6 # _exptl.entry_id 4IN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 568.914 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPHEROIDENE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IN6 _cell.length_a 139.028 _cell.length_b 139.028 _cell.length_c 184.345 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id X _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 U FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 U FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc3 B NE2 HIS 219 M HIS 219 1_555 U FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc4 B OE2 GLU 234 M GLU 234 1_555 U FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc5 B OE1 GLU 234 M GLU 234 1_555 U FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc6 B NE2 HIS 266 M HIS 266 1_555 U FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? # _chem_comp.formula 'C41 H60 O' _chem_comp.formula_weight 568.914 _chem_comp.id SPO _chem_comp.mon_nstd_flag . _chem_comp.name SPHEROIDENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CM1 O1 SPO sing 1230 n n CM1 HM11 SPO sing 1231 n n CM1 HM12 SPO sing 1232 n n CM1 HM13 SPO sing 1233 n n O1 C1 SPO sing 1234 n n C1 C2 SPO sing 1235 n n C1 C3 SPO sing 1236 n n C1 C4 SPO sing 1237 n n C2 H21A SPO sing 1238 n n C2 H22A SPO sing 1239 n n C2 H23 SPO sing 1240 n n C3 H31 SPO sing 1241 n n C3 H32A SPO sing 1242 n n C3 H33 SPO sing 1243 n n C4 C5 SPO sing 1244 n n C4 H41 SPO sing 1245 n n C4 H42 SPO sing 1246 n n C5 C6 SPO doub 1247 e n C5 H5 SPO sing 1248 n n C6 C7 SPO sing 1249 n n C6 H6 SPO sing 1250 n n C7 C8 SPO sing 1251 n n C7 C9 SPO doub 1252 e n C8 H81 SPO sing 1253 n n C8 H82 SPO sing 1254 n n C8 H83 SPO sing 1255 n n C9 C10 SPO sing 1256 n n C9 H9 SPO sing 1257 n n C10 C11 SPO doub 1258 e n C10 H10 SPO sing 1259 n n C11 C12 SPO sing 1260 n n C11 H11 SPO sing 1261 n n C12 C13 SPO sing 1262 n n C12 C14 SPO doub 1263 e n C13 H131 SPO sing 1264 n n C13 H132 SPO sing 1265 n n C13 H133 SPO sing 1266 n n C14 C15 SPO sing 1267 n n C14 H14 SPO sing 1268 n n C15 C16 SPO doub 1269 e n C15 H15 SPO sing 1270 n n C16 C17 SPO sing 1271 n n C16 H16 SPO sing 1272 n n C17 C18 SPO sing 1273 n n C17 C19 SPO doub 1274 z n C18 H181 SPO sing 1275 n n C18 H182 SPO sing 1276 n n C18 H183 SPO sing 1277 n n C19 C20 SPO sing 1278 n n C19 H19 SPO sing 1279 n n C20 C21 SPO doub 1280 e n C20 H20 SPO sing 1281 n n C21 C22 SPO sing 1282 n n C21 H21 SPO sing 1283 n n C22 C23 SPO doub 1284 e n C22 H22 SPO sing 1285 n n C23 C24 SPO sing 1286 n n C23 C25 SPO sing 1287 n n C24 H241 SPO sing 1288 n n C24 H242 SPO sing 1289 n n C24 H243 SPO sing 1290 n n C25 C26 SPO doub 1291 e n C25 H25 SPO sing 1292 n n C26 C27 SPO sing 1293 n n C26 H26 SPO sing 1294 n n C27 C28 SPO doub 1295 e n C27 H27 SPO sing 1296 n n C28 C29 SPO sing 1297 n n C28 C30 SPO sing 1298 n n C29 H291 SPO sing 1299 n n C29 H292 SPO sing 1300 n n C29 H293 SPO sing 1301 n n C30 C31 SPO sing 1302 n n C30 H301 SPO sing 1303 n n C30 H302 SPO sing 1304 n n C31 C32 SPO sing 1305 n n C31 H311 SPO sing 1306 n n C31 H312 SPO sing 1307 n n C32 C33 SPO doub 1308 e n C32 H32 SPO sing 1309 n n C33 C34 SPO sing 1310 n n C33 C35 SPO sing 1311 n n C34 H341 SPO sing 1312 n n C34 H342 SPO sing 1313 n n C34 H343 SPO sing 1314 n n C35 C36 SPO sing 1315 n n C35 H351 SPO sing 1316 n n C35 H352 SPO sing 1317 n n C36 C37 SPO sing 1318 n n C36 H361 SPO sing 1319 n n C36 H362 SPO sing 1320 n n C37 C38 SPO doub 1321 n n C37 H37 SPO sing 1322 n n C38 C39 SPO sing 1323 n n C38 C40 SPO sing 1324 n n C39 H391 SPO sing 1325 n n C39 H392 SPO sing 1326 n n C39 H393 SPO sing 1327 n n C40 H401 SPO sing 1328 n n C40 H402 SPO sing 1329 n n C40 H403 SPO sing 1330 n n # _atom_sites.entry_id 4IN6 _atom_sites.fract_transf_matrix[1][1] 0.007193 _atom_sites.fract_transf_matrix[1][2] 0.004153 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BPH L 1 301 302 BPH BPH . E 5 U10 L 1 302 303 U10 U10 . F 6 BCL L 1 303 304 BCL BCL . G 7 PO4 L 1 304 305 PO4 PO4 . H 8 HTO L 1 305 306 HTO HTO . I 9 GOL L 1 306 307 GOL GOL . J 9 GOL L 1 307 308 GOL GOL . K 6 BCL L 1 308 301 BCL BCL . L 9 GOL L 1 309 309 GOL GOL . M 7 PO4 L 1 310 310 PO4 PO4 . N 9 GOL L 1 311 311 GOL GOL . O 9 GOL L 1 312 312 GOL GOL . P 9 GOL L 1 313 313 GOL GOL . Q 6 BCL M 1 401 401 BCL BCL . R 6 BCL M 1 402 402 BCL BCL . S 10 LDA M 1 403 403 LDA LDA . T 10 LDA M 1 404 404 LDA LDA . U 11 FE M 1 405 405 FE FE . V 4 BPH M 1 406 406 BPH BPH . W 5 U10 M 1 407 407 U10 U10 . X 12 SPO M 1 408 408 SPO SPO . Y 13 CDL M 1 409 409 CDL CDL . Z 14 PC1 M 1 410 410 PC1 PC1 . AA 7 PO4 M 1 411 411 PO4 PO4 . BA 7 PO4 M 1 412 412 PO4 PO4 . CA 10 LDA M 1 413 413 LDA LDA . DA 15 GGD H 1 301 314 GGD GGD . EA 9 GOL H 1 302 301 GOL GOL . FA 9 GOL H 1 303 302 GOL GOL . GA 7 PO4 H 1 304 303 PO4 PO4 . HA 9 GOL H 1 305 304 GOL GOL . IA 9 GOL H 1 306 305 GOL GOL . JA 9 GOL H 1 307 306 GOL GOL . KA 16 HOH L 1 401 401 HOH HOH . KA 16 HOH L 2 402 402 HOH HOH . KA 16 HOH L 3 403 403 HOH HOH . KA 16 HOH L 4 404 404 HOH HOH . KA 16 HOH L 5 405 405 HOH HOH . KA 16 HOH L 6 406 407 HOH HOH . KA 16 HOH L 7 407 408 HOH HOH . KA 16 HOH L 8 408 409 HOH HOH . KA 16 HOH L 9 409 410 HOH HOH . KA 16 HOH L 10 410 411 HOH HOH . KA 16 HOH L 11 411 412 HOH HOH . KA 16 HOH L 12 412 413 HOH HOH . KA 16 HOH L 13 413 414 HOH HOH . KA 16 HOH L 14 414 415 HOH HOH . KA 16 HOH L 15 415 416 HOH HOH . KA 16 HOH L 16 416 417 HOH HOH . KA 16 HOH L 17 417 418 HOH HOH . KA 16 HOH L 18 418 419 HOH HOH . KA 16 HOH L 19 419 420 HOH HOH . KA 16 HOH L 20 420 421 HOH HOH . KA 16 HOH L 21 421 422 HOH HOH . KA 16 HOH L 22 422 423 HOH HOH . KA 16 HOH L 23 423 424 HOH HOH . KA 16 HOH L 24 424 425 HOH HOH . KA 16 HOH L 25 425 426 HOH HOH . KA 16 HOH L 26 426 509 HOH HOH . KA 16 HOH L 27 427 511 HOH HOH . KA 16 HOH L 28 428 414 HOH HOH . LA 16 HOH M 1 501 406 HOH HOH . LA 16 HOH M 2 502 501 HOH HOH . LA 16 HOH M 3 503 502 HOH HOH . LA 16 HOH M 4 504 503 HOH HOH . LA 16 HOH M 5 505 504 HOH HOH . LA 16 HOH M 6 506 505 HOH HOH . LA 16 HOH M 7 507 506 HOH HOH . LA 16 HOH M 8 508 507 HOH HOH . LA 16 HOH M 9 509 508 HOH HOH . LA 16 HOH M 10 510 510 HOH HOH . LA 16 HOH M 11 511 512 HOH HOH . LA 16 HOH M 12 512 513 HOH HOH . LA 16 HOH M 13 513 514 HOH HOH . LA 16 HOH M 14 514 515 HOH HOH . LA 16 HOH M 15 515 516 HOH HOH . LA 16 HOH M 16 516 519 HOH HOH . LA 16 HOH M 17 517 520 HOH HOH . LA 16 HOH M 18 518 521 HOH HOH . LA 16 HOH M 19 519 522 HOH HOH . LA 16 HOH M 20 520 523 HOH HOH . LA 16 HOH M 21 521 524 HOH HOH . LA 16 HOH M 22 522 525 HOH HOH . MA 16 HOH H 1 401 517 HOH HOH . MA 16 HOH H 2 402 518 HOH HOH . MA 16 HOH H 3 403 401 HOH HOH . MA 16 HOH H 4 404 402 HOH HOH . MA 16 HOH H 5 405 403 HOH HOH . MA 16 HOH H 6 406 404 HOH HOH . MA 16 HOH H 7 407 405 HOH HOH . MA 16 HOH H 8 408 406 HOH HOH . MA 16 HOH H 9 409 407 HOH HOH . MA 16 HOH H 10 410 408 HOH HOH . MA 16 HOH H 11 411 409 HOH HOH . MA 16 HOH H 12 412 410 HOH HOH . MA 16 HOH H 13 413 411 HOH HOH . MA 16 HOH H 14 414 412 HOH HOH . MA 16 HOH H 15 415 413 HOH HOH . MA 16 HOH H 16 416 415 HOH HOH . MA 16 HOH H 17 417 416 HOH HOH . MA 16 HOH H 18 418 417 HOH HOH . MA 16 HOH H 19 419 418 HOH HOH . MA 16 HOH H 20 420 419 HOH HOH . MA 16 HOH H 21 421 420 HOH HOH . MA 16 HOH H 22 422 421 HOH HOH . MA 16 HOH H 23 423 422 HOH HOH . MA 16 HOH H 24 424 423 HOH HOH . MA 16 HOH H 25 425 424 HOH HOH . MA 16 HOH H 26 426 425 HOH HOH . MA 16 HOH H 27 427 426 HOH HOH . MA 16 HOH H 28 428 427 HOH HOH . MA 16 HOH H 29 429 428 HOH HOH . MA 16 HOH H 30 430 429 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CM1 SPO . . . X 12 43.336 83.319 55.151 1 53.09 ? CM1 SPO 408 M 1 HETATM 2 O O1 SPO . . . X 12 44.339 84.34 54.926 1 54.13 ? O1 SPO 408 M 1 HETATM 3 C C1 SPO . . . X 12 45.262 84.243 53.834 1 57.48 ? C1 SPO 408 M 1 HETATM 4 C C2 SPO . . . X 12 45.429 82.777 53.451 1 55.94 ? C2 SPO 408 M 1 HETATM 5 C C3 SPO . . . X 12 46.512 84.948 54.384 1 49.5 ? C3 SPO 408 M 1 HETATM 6 C C4 SPO . . . X 12 44.8 84.881 52.525 1 54.57 ? C4 SPO 408 M 1 HETATM 7 C C5 SPO . . . X 12 43.344 85.319 52.598 1 52.91 ? C5 SPO 408 M 1 HETATM 8 C C6 SPO . . . X 12 43.049 86.258 51.732 1 56.34 ? C6 SPO 408 M 1 HETATM 9 C C7 SPO . . . X 12 41.716 86.807 51.481 1 59.65 ? C7 SPO 408 M 1 HETATM 10 C C8 SPO . . . X 12 40.589 86.526 52.433 1 62.43 ? C8 SPO 408 M 1 HETATM 11 C C9 SPO . . . X 12 41.59 87.455 50.288 1 54.35 ? C9 SPO 408 M 1 HETATM 12 C C10 SPO . . . X 12 40.363 88.05 49.753 1 52.56 ? C10 SPO 408 M 1 HETATM 13 C C11 SPO . . . X 12 40.391 88.706 48.575 1 50.16 ? C11 SPO 408 M 1 HETATM 14 C C12 SPO . . . X 12 39.207 89.342 47.905 1 47.13 ? C12 SPO 408 M 1 HETATM 15 C C13 SPO . . . X 12 37.845 89.274 48.5 1 54.56 ? C13 SPO 408 M 1 HETATM 16 C C14 SPO . . . X 12 39.364 89.949 46.72 1 43.03 ? C14 SPO 408 M 1 HETATM 17 C C15 SPO . . . X 12 38.294 90.568 45.965 1 41.9 ? C15 SPO 408 M 1 HETATM 18 C C16 SPO . . . X 12 38.586 91.163 44.798 1 41.63 ? C16 SPO 408 M 1 HETATM 19 C C17 SPO . . . X 12 37.609 91.853 43.894 1 41.8 ? C17 SPO 408 M 1 HETATM 20 C C18 SPO . . . X 12 36.115 91.725 44.107 1 38.36 ? C18 SPO 408 M 1 HETATM 21 C C19 SPO . . . X 12 38.076 92.542 42.812 1 42.56 ? C19 SPO 408 M 1 HETATM 22 C C20 SPO . . . X 12 37.136 93.232 41.909 1 43.58 ? C20 SPO 408 M 1 HETATM 23 C C21 SPO . . . X 12 37.456 94.065 40.927 1 41.76 ? C21 SPO 408 M 1 HETATM 24 C C22 SPO . . . X 12 38.834 94.348 40.586 1 42.45 ? C22 SPO 408 M 1 HETATM 25 C C23 SPO . . . X 12 39.23 94.992 39.495 1 39.65 ? C23 SPO 408 M 1 HETATM 26 C C24 SPO . . . X 12 38.301 95.627 38.533 1 42.99 ? C24 SPO 408 M 1 HETATM 27 C C25 SPO . . . X 12 40.674 95.126 39.325 1 42.07 ? C25 SPO 408 M 1 HETATM 28 C C26 SPO . . . X 12 41.299 95.621 38.26 1 44.47 ? C26 SPO 408 M 1 HETATM 29 C C27 SPO . . . X 12 42.782 95.671 38.318 1 43.49 ? C27 SPO 408 M 1 HETATM 30 C C28 SPO . . . X 12 43.556 96.098 37.317 1 39.37 ? C28 SPO 408 M 1 HETATM 31 C C29 SPO . . . X 12 42.988 96.56 36.017 1 36.57 ? C29 SPO 408 M 1 HETATM 32 C C30 SPO . . . X 12 45.058 96.153 37.51 1 43.43 ? C30 SPO 408 M 1 HETATM 33 C C31 SPO . . . X 12 45.523 97.63 37.495 1 41.59 ? C31 SPO 408 M 1 HETATM 34 C C32 SPO . . . X 12 46.974 97.716 37.942 1 48.78 ? C32 SPO 408 M 1 HETATM 35 C C33 SPO . . . X 12 47.532 98.783 38.557 1 56.31 ? C33 SPO 408 M 1 HETATM 36 C C34 SPO . . . X 12 46.795 100.05 38.875 1 60.41 ? C34 SPO 408 M 1 HETATM 37 C C35 SPO . . . X 12 48.959 98.743 38.972 1 60.24 ? C35 SPO 408 M 1 HETATM 38 C C36 SPO . . . X 12 49.865 99.409 37.938 1 69.47 ? C36 SPO 408 M 1 HETATM 39 C C37 SPO . . . X 12 51.259 99.216 38.505 1 85.11 ? C37 SPO 408 M 1 HETATM 40 C C38 SPO . . . X 12 52.425 99.32 37.83 1 91.24 ? C38 SPO 408 M 1 HETATM 41 C C39 SPO . . . X 12 52.485 99.683 36.36 1 77.71 ? C39 SPO 408 M 1 HETATM 42 C C40 SPO . . . X 12 53.687 99.062 38.631 1 88.77 ? C40 SPO 408 M 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 42 #