data_4IN7 # _model_server_result.job_id u6goVACVQa9j_DhLCPrsxg _model_server_result.datetime_utc '2024-11-05 23:52:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4in7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":304}' # _entry.id 4IN7 # _exptl.entry_id 4IN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IN7 _cell.length_a 139.138 _cell.length_b 139.138 _cell.length_c 185.14 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 L N N ? 8 M N N ? 8 N N N ? 8 X N N ? 8 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 140 H MET 134 1_555 I K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc2 A O ALA 143 H ALA 137 1_555 I K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc3 A O PHE 146 H PHE 140 1_555 I K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc4 B NE2 HIS 191 L HIS 190 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc5 B NE2 HIS 231 L HIS 230 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc6 C OD1 ASN 215 M ASN 214 1_555 FA MG MG . M MG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc7 C NE2 HIS 220 M HIS 219 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc8 C OE2 GLU 235 M GLU 234 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc9 C OE1 GLU 235 M GLU 234 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc10 C NE2 HIS 267 M HIS 266 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 920 n n N1 CM1 LDA sing 921 n n N1 CM2 LDA sing 922 n n N1 C1 LDA sing 923 n n CM1 HM11 LDA sing 924 n n CM1 HM12 LDA sing 925 n n CM1 HM13 LDA sing 926 n n CM2 HM21 LDA sing 927 n n CM2 HM22 LDA sing 928 n n CM2 HM23 LDA sing 929 n n C1 C2 LDA sing 930 n n C1 H11 LDA sing 931 n n C1 H12 LDA sing 932 n n C2 C3 LDA sing 933 n n C2 H21 LDA sing 934 n n C2 H22 LDA sing 935 n n C3 C4 LDA sing 936 n n C3 H31 LDA sing 937 n n C3 H32 LDA sing 938 n n C4 C5 LDA sing 939 n n C4 H41 LDA sing 940 n n C4 H42 LDA sing 941 n n C5 C6 LDA sing 942 n n C5 H51 LDA sing 943 n n C5 H52 LDA sing 944 n n C6 C7 LDA sing 945 n n C6 H61 LDA sing 946 n n C6 H62 LDA sing 947 n n C7 C8 LDA sing 948 n n C7 H71 LDA sing 949 n n C7 H72 LDA sing 950 n n C8 C9 LDA sing 951 n n C8 H81 LDA sing 952 n n C8 H82 LDA sing 953 n n C9 C10 LDA sing 954 n n C9 H91 LDA sing 955 n n C9 H92 LDA sing 956 n n C10 C11 LDA sing 957 n n C10 H101 LDA sing 958 n n C10 H102 LDA sing 959 n n C11 C12 LDA sing 960 n n C11 H111 LDA sing 961 n n C11 H112 LDA sing 962 n n C12 H121 LDA sing 963 n n C12 H122 LDA sing 964 n n C12 H123 LDA sing 965 n n # _atom_sites.entry_id 4IN7 _atom_sites.fract_transf_matrix[1][1] 0.007187 _atom_sites.fract_transf_matrix[1][2] 0.004149 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL H 1 301 301 GOL GOL . E 4 GOL H 1 306 301 GOL GOL . F 4 GOL H 1 302 302 GOL GOL . G 4 GOL H 1 303 303 GOL GOL . H 4 GOL H 1 304 304 GOL GOL . I 5 K H 1 305 305 K K . J 6 GGD H 1 307 410 GGD GGD . K 7 BCL L 1 301 302 BCL BCL . L 8 LDA L 1 302 303 LDA LDA . M 8 LDA L 1 303 304 LDA LDA . N 8 LDA L 1 304 305 LDA LDA . O 9 U10 L 1 305 306 U10 U10 . P 7 BCL L 1 306 307 BCL BCL . Q 10 PO4 L 1 307 308 PO4 PO4 . R 11 HTO L 1 308 309 HTO HTO . S 11 HTO L 1 309 310 HTO HTO . T 4 GOL L 1 310 311 GOL GOL . U 4 GOL L 1 311 312 GOL GOL . V 7 BCL M 1 401 313 BCL BCL . W 7 BCL M 1 402 401 BCL BCL . X 8 LDA M 1 403 402 LDA LDA . Y 8 LDA M 1 404 403 LDA LDA . Z 12 FE M 1 405 404 FE FE . AA 13 BPH M 1 406 405 BPH BPH . BA 9 U10 M 1 407 406 U10 U10 . CA 14 SPO M 1 408 407 SPO SPO . DA 15 CDL M 1 409 408 CDL CDL . EA 16 PC1 M 1 410 409 PC1 PC1 . FA 17 MG M 1 411 411 MG MG . GA 13 BPH M 1 412 412 BPH BPH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . N 8 24.396 76.736 45.335 1 116.26 ? N1 LDA 304 L 1 HETATM 2 O O1 LDA . . . N 8 23.946 77.235 46.384 1 111.99 ? O1 LDA 304 L 1 HETATM 3 C CM1 LDA . . . N 8 25.142 75.492 45.655 1 115.78 ? CM1 LDA 304 L 1 HETATM 4 C CM2 LDA . . . N 8 23.242 76.377 44.484 1 99.73 ? CM2 LDA 304 L 1 HETATM 5 C C1 LDA . . . N 8 25.243 77.774 44.661 1 123.06 ? C1 LDA 304 L 1 HETATM 6 C C2 LDA . . . N 8 26.664 78.024 45.25 1 128.72 ? C2 LDA 304 L 1 HETATM 7 C C3 LDA . . . N 8 27.135 79.503 45.355 1 121.8 ? C3 LDA 304 L 1 HETATM 8 C C4 LDA . . . N 8 28.092 80.021 44.26 1 108.98 ? C4 LDA 304 L 1 HETATM 9 C C5 LDA . . . N 8 27.315 80.405 42.995 1 98.87 ? C5 LDA 304 L 1 HETATM 10 C C6 LDA . . . N 8 28.146 80.551 41.717 1 92.79 ? C6 LDA 304 L 1 HETATM 11 C C7 LDA . . . N 8 28.203 79.314 40.829 1 79.91 ? C7 LDA 304 L 1 HETATM 12 C C8 LDA . . . N 8 29.607 78.726 40.877 1 73.45 ? C8 LDA 304 L 1 HETATM 13 C C9 LDA . . . N 8 29.591 77.328 40.287 1 71.15 ? C9 LDA 304 L 1 HETATM 14 C C10 LDA . . . N 8 31.015 76.896 39.967 1 76.22 ? C10 LDA 304 L 1 HETATM 15 C C11 LDA . . . N 8 31.065 75.834 38.855 1 80.94 ? C11 LDA 304 L 1 HETATM 16 C C12 LDA . . . N 8 31.546 76.403 37.523 1 74.24 ? C12 LDA 304 L 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #