data_4IN7 # _model_server_result.job_id 28RCP9aDhcgqDXwYzpClWg _model_server_result.datetime_utc '2024-11-05 23:59:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4in7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":305}' # _entry.id 4IN7 # _exptl.entry_id 4IN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 863.343 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IN7 _cell.length_a 139.138 _cell.length_b 139.138 _cell.length_c 185.14 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 O N N ? 9 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 140 H MET 134 1_555 I K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc2 A O ALA 143 H ALA 137 1_555 I K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc3 A O PHE 146 H PHE 140 1_555 I K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc4 B NE2 HIS 191 L HIS 190 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc5 B NE2 HIS 231 L HIS 230 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc6 C OD1 ASN 215 M ASN 214 1_555 FA MG MG . M MG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc7 C NE2 HIS 220 M HIS 219 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc8 C OE2 GLU 235 M GLU 234 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc9 C OE1 GLU 235 M GLU 234 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc10 C NE2 HIS 267 M HIS 266 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 U10 sing 1397 n n C1 C6 U10 doub 1398 n n C1 C1M U10 sing 1399 n n C2 C3 U10 sing 1400 n n C2 O2 U10 doub 1401 n n C3 C4 U10 doub 1402 n n C3 O3 U10 sing 1403 n n C4 C5 U10 sing 1404 n n C4 O4 U10 sing 1405 n n C5 C6 U10 sing 1406 n n C5 O5 U10 doub 1407 n n C6 C7 U10 sing 1408 n n C1M H1M1 U10 sing 1409 n n C1M H1M2 U10 sing 1410 n n C1M H1M3 U10 sing 1411 n n C3M O3 U10 sing 1412 n n C3M H3M1 U10 sing 1413 n n C3M H3M2 U10 sing 1414 n n C3M H3M3 U10 sing 1415 n n C4M O4 U10 sing 1416 n n C4M H4M1 U10 sing 1417 n n C4M H4M2 U10 sing 1418 n n C4M H4M3 U10 sing 1419 n n C7 C8 U10 sing 1420 n n C7 H71 U10 sing 1421 n n C7 H72 U10 sing 1422 n n C8 C9 U10 doub 1423 e n C8 H8 U10 sing 1424 n n C9 C10 U10 sing 1425 n n C9 C11 U10 sing 1426 n n C10 H101 U10 sing 1427 n n C10 H102 U10 sing 1428 n n C10 H103 U10 sing 1429 n n C11 C12 U10 sing 1430 n n C11 H111 U10 sing 1431 n n C11 H112 U10 sing 1432 n n C12 C13 U10 sing 1433 n n C12 H121 U10 sing 1434 n n C12 H122 U10 sing 1435 n n C13 C14 U10 doub 1436 e n C13 H13 U10 sing 1437 n n C14 C15 U10 sing 1438 n n C14 C16 U10 sing 1439 n n C15 H151 U10 sing 1440 n n C15 H152 U10 sing 1441 n n C15 H153 U10 sing 1442 n n C16 C17 U10 sing 1443 n n C16 H161 U10 sing 1444 n n C16 H162 U10 sing 1445 n n C17 C18 U10 sing 1446 n n C17 H171 U10 sing 1447 n n C17 H172 U10 sing 1448 n n C18 C19 U10 doub 1449 e n C18 H18 U10 sing 1450 n n C19 C20 U10 sing 1451 n n C19 C21 U10 sing 1452 n n C20 H201 U10 sing 1453 n n C20 H202 U10 sing 1454 n n C20 H203 U10 sing 1455 n n C21 C22 U10 sing 1456 n n C21 H211 U10 sing 1457 n n C21 H212 U10 sing 1458 n n C22 C23 U10 sing 1459 n n C22 H221 U10 sing 1460 n n C22 H222 U10 sing 1461 n n C23 C24 U10 doub 1462 e n C23 H23 U10 sing 1463 n n C24 C25 U10 sing 1464 n n C24 C26 U10 sing 1465 n n C25 H251 U10 sing 1466 n n C25 H252 U10 sing 1467 n n C25 H253 U10 sing 1468 n n C26 C27 U10 sing 1469 n n C26 H261 U10 sing 1470 n n C26 H262 U10 sing 1471 n n C27 C28 U10 sing 1472 n n C27 H271 U10 sing 1473 n n C27 H272 U10 sing 1474 n n C28 C29 U10 doub 1475 e n C28 H28 U10 sing 1476 n n C29 C30 U10 sing 1477 n n C29 C31 U10 sing 1478 n n C30 H301 U10 sing 1479 n n C30 H302 U10 sing 1480 n n C30 H303 U10 sing 1481 n n C31 C32 U10 sing 1482 n n C31 H311 U10 sing 1483 n n C31 H312 U10 sing 1484 n n C32 C33 U10 sing 1485 n n C32 H321 U10 sing 1486 n n C32 H322 U10 sing 1487 n n C33 C34 U10 doub 1488 e n C33 H33 U10 sing 1489 n n C34 C35 U10 sing 1490 n n C34 C36 U10 sing 1491 n n C35 H351 U10 sing 1492 n n C35 H352 U10 sing 1493 n n C35 H353 U10 sing 1494 n n C36 C37 U10 sing 1495 n n C36 H361 U10 sing 1496 n n C36 H362 U10 sing 1497 n n C37 C38 U10 sing 1498 n n C37 H371 U10 sing 1499 n n C37 H372 U10 sing 1500 n n C38 C39 U10 doub 1501 e n C38 H38 U10 sing 1502 n n C39 C40 U10 sing 1503 n n C39 C41 U10 sing 1504 n n C40 H401 U10 sing 1505 n n C40 H402 U10 sing 1506 n n C40 H403 U10 sing 1507 n n C41 C42 U10 sing 1508 n n C41 H411 U10 sing 1509 n n C41 H412 U10 sing 1510 n n C42 C43 U10 sing 1511 n n C42 H421 U10 sing 1512 n n C42 H422 U10 sing 1513 n n C43 C44 U10 doub 1514 e n C43 H43 U10 sing 1515 n n C44 C45 U10 sing 1516 n n C44 C46 U10 sing 1517 n n C45 H451 U10 sing 1518 n n C45 H452 U10 sing 1519 n n C45 H453 U10 sing 1520 n n C46 C47 U10 sing 1521 n n C46 H461 U10 sing 1522 n n C46 H462 U10 sing 1523 n n C47 C48 U10 sing 1524 n n C47 H471 U10 sing 1525 n n C47 H472 U10 sing 1526 n n C48 C49 U10 doub 1527 e n C48 H48 U10 sing 1528 n n C49 C50 U10 sing 1529 n n C49 C51 U10 sing 1530 n n C50 H501 U10 sing 1531 n n C50 H502 U10 sing 1532 n n C50 H503 U10 sing 1533 n n C51 C52 U10 sing 1534 n n C51 H511 U10 sing 1535 n n C51 H512 U10 sing 1536 n n C52 C53 U10 sing 1537 n n C52 H521 U10 sing 1538 n n C52 H522 U10 sing 1539 n n C53 C54 U10 doub 1540 n n C53 H53 U10 sing 1541 n n C54 C55 U10 sing 1542 n n C54 C56 U10 sing 1543 n n C55 H551 U10 sing 1544 n n C55 H552 U10 sing 1545 n n C55 H553 U10 sing 1546 n n C56 H561 U10 sing 1547 n n C56 H562 U10 sing 1548 n n C56 H563 U10 sing 1549 n n # _atom_sites.entry_id 4IN7 _atom_sites.fract_transf_matrix[1][1] 0.007187 _atom_sites.fract_transf_matrix[1][2] 0.004149 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL H 1 301 301 GOL GOL . E 4 GOL H 1 306 301 GOL GOL . F 4 GOL H 1 302 302 GOL GOL . G 4 GOL H 1 303 303 GOL GOL . H 4 GOL H 1 304 304 GOL GOL . I 5 K H 1 305 305 K K . J 6 GGD H 1 307 410 GGD GGD . K 7 BCL L 1 301 302 BCL BCL . L 8 LDA L 1 302 303 LDA LDA . M 8 LDA L 1 303 304 LDA LDA . N 8 LDA L 1 304 305 LDA LDA . O 9 U10 L 1 305 306 U10 U10 . P 7 BCL L 1 306 307 BCL BCL . Q 10 PO4 L 1 307 308 PO4 PO4 . R 11 HTO L 1 308 309 HTO HTO . S 11 HTO L 1 309 310 HTO HTO . T 4 GOL L 1 310 311 GOL GOL . U 4 GOL L 1 311 312 GOL GOL . V 7 BCL M 1 401 313 BCL BCL . W 7 BCL M 1 402 401 BCL BCL . X 8 LDA M 1 403 402 LDA LDA . Y 8 LDA M 1 404 403 LDA LDA . Z 12 FE M 1 405 404 FE FE . AA 13 BPH M 1 406 405 BPH BPH . BA 9 U10 M 1 407 406 U10 U10 . CA 14 SPO M 1 408 407 SPO SPO . DA 15 CDL M 1 409 408 CDL CDL . EA 16 PC1 M 1 410 409 PC1 PC1 . FA 17 MG M 1 411 411 MG MG . GA 13 BPH M 1 412 412 BPH BPH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . A . O 9 34.741 74.049 27.283 0.65 36.3 ? C1 U10 305 L 1 HETATM 2 C C1 U10 . B . O 9 33.731 75.866 33.921 0.35 53.59 ? C1 U10 305 L 1 HETATM 3 C C2 U10 . A . O 9 34.136 73.385 26.094 0.65 34.38 ? C2 U10 305 L 1 HETATM 4 C C2 U10 . B . O 9 33.712 76.231 32.469 0.35 56.08 ? C2 U10 305 L 1 HETATM 5 C C3 U10 . A . O 9 34.19 71.948 25.91 0.65 35.08 ? C3 U10 305 L 1 HETATM 6 C C3 U10 . B . O 9 34.223 75.285 31.425 0.35 57.06 ? C3 U10 305 L 1 HETATM 7 C C4 U10 . A . O 9 34.822 71.126 26.948 0.65 34.79 ? C4 U10 305 L 1 HETATM 8 C C4 U10 . B . O 9 34.768 73.964 31.854 0.35 53.86 ? C4 U10 305 L 1 HETATM 9 C C5 U10 . A . O 9 35.448 71.74 28.129 0.65 36.32 ? C5 U10 305 L 1 HETATM 10 C C5 U10 . B . O 9 34.785 73.615 33.286 0.35 55.82 ? C5 U10 305 L 1 HETATM 11 C C6 U10 . A . O 9 35.391 73.195 28.313 0.65 37.68 ? C6 U10 305 L 1 HETATM 12 C C6 U10 . B . O 9 34.271 74.534 34.358 0.35 53.58 ? C6 U10 305 L 1 HETATM 13 C C1M U10 . A . O 9 34.701 75.559 27.412 0.65 34.18 ? C1M U10 305 L 1 HETATM 14 C C1M U10 . B . O 9 33.192 76.872 34.9 0.35 50.01 ? C1M U10 305 L 1 HETATM 15 C C3M U10 . A . O 9 34.109 71.611 23.456 0.65 33.25 ? C3M U10 305 L 1 HETATM 16 C C3M U10 . B . O 9 34.46 74.675 29.061 0.35 60.16 ? C3M U10 305 L 1 HETATM 17 C C4M U10 . A . O 9 35.982 69.25 26.056 0.65 36.28 ? C4M U10 305 L 1 HETATM 18 C C4M U10 . B . O 9 35.756 73.367 29.699 0.35 50.67 ? C4M U10 305 L 1 HETATM 19 C C7 U10 . A . O 9 36.107 73.727 29.526 0.65 41.54 ? C7 U10 305 L 1 HETATM 20 C C7 U10 . B . O 9 34.313 74.11 35.833 0.35 52.19 ? C7 U10 305 L 1 HETATM 21 C C8 U10 . A . O 9 35.343 74.108 30.767 0.65 45.41 ? C8 U10 305 L 1 HETATM 22 C C8 U10 . B . O 9 33.257 73.056 36.172 0.35 49.07 ? C8 U10 305 L 1 HETATM 23 C C9 U10 . A . O 9 35.762 73.802 31.996 0.65 48.28 ? C9 U10 305 L 1 HETATM 24 C C9 U10 . B . O 9 33.097 72.518 37.405 0.35 44.79 ? C9 U10 305 L 1 HETATM 25 C C10 U10 . A . O 9 36.966 72.986 32.298 0.65 50.3 ? C10 U10 305 L 1 HETATM 26 C C10 U10 . B . O 9 32.015 71.493 37.641 0.35 41.37 ? C10 U10 305 L 1 HETATM 27 C C11 U10 . A . O 9 34.969 74.283 33.169 0.65 56.25 ? C11 U10 305 L 1 HETATM 28 C C11 U10 . B . O 9 33.994 72.963 38.539 0.35 43.05 ? C11 U10 305 L 1 HETATM 29 C C12 U10 . A . O 9 35.377 75.725 33.526 0.65 63.12 ? C12 U10 305 L 1 HETATM 30 C C12 U10 . B . O 9 34.521 71.767 39.328 0.35 42.1 ? C12 U10 305 L 1 HETATM 31 C C13 U10 . A . O 9 34.103 76.518 33.784 0.65 65.45 ? C13 U10 305 L 1 HETATM 32 C C13 U10 . B . O 9 35.966 71.51 38.954 0.35 41.22 ? C13 U10 305 L 1 HETATM 33 C C14 U10 . A . O 9 33.944 77.432 34.749 0.65 67.43 ? C14 U10 305 L 1 HETATM 34 C C14 U10 . B . O 9 36.917 71.205 39.86 0.35 39.66 ? C14 U10 305 L 1 HETATM 35 C C15 U10 . A . O 9 35.035 77.843 35.726 0.65 71.31 ? C15 U10 305 L 1 HETATM 36 C C15 U10 . B . O 9 38.294 70.979 39.312 0.35 38.7 ? C15 U10 305 L 1 HETATM 37 C C16 U10 . A . O 9 32.577 78.046 34.792 0.65 61.45 ? C16 U10 305 L 1 HETATM 38 C C16 U10 . B . O 9 36.638 71.09 41.353 0.35 35.77 ? C16 U10 305 L 1 HETATM 39 O O2 U10 . A . O 9 33.59 74.017 25.187 0.65 34.55 ? O2 U10 305 L 1 HETATM 40 O O2 U10 . B . O 9 33.256 77.346 32.142 0.35 55.6 ? O2 U10 305 L 1 HETATM 41 O O3 U10 . A . O 9 33.606 71.388 24.782 0.65 38.67 ? O3 U10 305 L 1 HETATM 42 O O3 U10 . B . O 9 34.188 75.635 30.093 0.35 60.78 ? O3 U10 305 L 1 HETATM 43 O O4 U10 . A . O 9 34.867 69.782 26.782 0.65 36.2 ? O4 U10 305 L 1 HETATM 44 O O4 U10 . B . O 9 35.265 73.023 30.992 0.35 50.02 ? O4 U10 305 L 1 HETATM 45 O O5 U10 . A . O 9 36.033 71.056 29.006 0.65 37.98 ? O5 U10 305 L 1 HETATM 46 O O5 U10 . B . O 9 35.257 72.497 33.548 0.35 62.95 ? O5 U10 305 L 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 46 #