data_4IN7
#
_model_server_result.job_id            c9L5aI-xfejnHQVpkYf1sQ 
_model_server_result.datetime_utc      '2024-11-05 23:50:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4in7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":408}' 
#
_entry.id    4IN7 
#
_exptl.entry_id    4IN7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              568.914 
_entity.id                          14 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPHEROIDENE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4IN7 
_cell.length_a            139.138 
_cell.length_b            139.138 
_cell.length_c            185.14 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4IN7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      14 
_struct_asym.id                             CA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O MET 140 H MET 134 1_555 I K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? 
metalc ? metalc2 A O ALA 143 H ALA 137 1_555 I K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc3 A O PHE 146 H PHE 140 1_555 I K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? 
metalc ? metalc4 B NE2 HIS 191 L HIS 190 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc5 B NE2 HIS 231 L HIS 230 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc6 C OD1 ASN 215 M ASN 214 1_555 FA MG MG . M MG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc7 C NE2 HIS 220 M HIS 219 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc8 C OE2 GLU 235 M GLU 234 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc9 C OE1 GLU 235 M GLU 234 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
metalc ? metalc10 C NE2 HIS 267 M HIS 266 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
#
_chem_comp.formula           'C41 H60 O' 
_chem_comp.formula_weight    568.914 
_chem_comp.id                SPO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPHEROIDENE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CM1 O1 SPO sing 1228 n n 
CM1 HM11 SPO sing 1229 n n 
CM1 HM12 SPO sing 1230 n n 
CM1 HM13 SPO sing 1231 n n 
O1 C1 SPO sing 1232 n n 
C1 C2 SPO sing 1233 n n 
C1 C3 SPO sing 1234 n n 
C1 C4 SPO sing 1235 n n 
C2 H21A SPO sing 1236 n n 
C2 H22A SPO sing 1237 n n 
C2 H23 SPO sing 1238 n n 
C3 H31 SPO sing 1239 n n 
C3 H32A SPO sing 1240 n n 
C3 H33 SPO sing 1241 n n 
C4 C5 SPO sing 1242 n n 
C4 H41 SPO sing 1243 n n 
C4 H42 SPO sing 1244 n n 
C5 C6 SPO doub 1245 e n 
C5 H5 SPO sing 1246 n n 
C6 C7 SPO sing 1247 n n 
C6 H6 SPO sing 1248 n n 
C7 C8 SPO sing 1249 n n 
C7 C9 SPO doub 1250 e n 
C8 H81 SPO sing 1251 n n 
C8 H82 SPO sing 1252 n n 
C8 H83 SPO sing 1253 n n 
C9 C10 SPO sing 1254 n n 
C9 H9 SPO sing 1255 n n 
C10 C11 SPO doub 1256 e n 
C10 H10 SPO sing 1257 n n 
C11 C12 SPO sing 1258 n n 
C11 H11 SPO sing 1259 n n 
C12 C13 SPO sing 1260 n n 
C12 C14 SPO doub 1261 e n 
C13 H131 SPO sing 1262 n n 
C13 H132 SPO sing 1263 n n 
C13 H133 SPO sing 1264 n n 
C14 C15 SPO sing 1265 n n 
C14 H14 SPO sing 1266 n n 
C15 C16 SPO doub 1267 e n 
C15 H15 SPO sing 1268 n n 
C16 C17 SPO sing 1269 n n 
C16 H16 SPO sing 1270 n n 
C17 C18 SPO sing 1271 n n 
C17 C19 SPO doub 1272 z n 
C18 H181 SPO sing 1273 n n 
C18 H182 SPO sing 1274 n n 
C18 H183 SPO sing 1275 n n 
C19 C20 SPO sing 1276 n n 
C19 H19 SPO sing 1277 n n 
C20 C21 SPO doub 1278 e n 
C20 H20 SPO sing 1279 n n 
C21 C22 SPO sing 1280 n n 
C21 H21 SPO sing 1281 n n 
C22 C23 SPO doub 1282 e n 
C22 H22 SPO sing 1283 n n 
C23 C24 SPO sing 1284 n n 
C23 C25 SPO sing 1285 n n 
C24 H241 SPO sing 1286 n n 
C24 H242 SPO sing 1287 n n 
C24 H243 SPO sing 1288 n n 
C25 C26 SPO doub 1289 e n 
C25 H25 SPO sing 1290 n n 
C26 C27 SPO sing 1291 n n 
C26 H26 SPO sing 1292 n n 
C27 C28 SPO doub 1293 e n 
C27 H27 SPO sing 1294 n n 
C28 C29 SPO sing 1295 n n 
C28 C30 SPO sing 1296 n n 
C29 H291 SPO sing 1297 n n 
C29 H292 SPO sing 1298 n n 
C29 H293 SPO sing 1299 n n 
C30 C31 SPO sing 1300 n n 
C30 H301 SPO sing 1301 n n 
C30 H302 SPO sing 1302 n n 
C31 C32 SPO sing 1303 n n 
C31 H311 SPO sing 1304 n n 
C31 H312 SPO sing 1305 n n 
C32 C33 SPO doub 1306 e n 
C32 H32 SPO sing 1307 n n 
C33 C34 SPO sing 1308 n n 
C33 C35 SPO sing 1309 n n 
C34 H341 SPO sing 1310 n n 
C34 H342 SPO sing 1311 n n 
C34 H343 SPO sing 1312 n n 
C35 C36 SPO sing 1313 n n 
C35 H351 SPO sing 1314 n n 
C35 H352 SPO sing 1315 n n 
C36 C37 SPO sing 1316 n n 
C36 H361 SPO sing 1317 n n 
C36 H362 SPO sing 1318 n n 
C37 C38 SPO doub 1319 n n 
C37 H37 SPO sing 1320 n n 
C38 C39 SPO sing 1321 n n 
C38 C40 SPO sing 1322 n n 
C39 H391 SPO sing 1323 n n 
C39 H392 SPO sing 1324 n n 
C39 H393 SPO sing 1325 n n 
C40 H401 SPO sing 1326 n n 
C40 H402 SPO sing 1327 n n 
C40 H403 SPO sing 1328 n n 
#
_atom_sites.entry_id                     4IN7 
_atom_sites.fract_transf_matrix[1][1]    0.007187 
_atom_sites.fract_transf_matrix[1][2]    0.004149 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008299 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005401 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL H 1 301 301 GOL GOL . 
E 4 GOL H 1 306 301 GOL GOL . 
F 4 GOL H 1 302 302 GOL GOL . 
G 4 GOL H 1 303 303 GOL GOL . 
H 4 GOL H 1 304 304 GOL GOL . 
I 5 K H 1 305 305 K K . 
J 6 GGD H 1 307 410 GGD GGD . 
K 7 BCL L 1 301 302 BCL BCL . 
L 8 LDA L 1 302 303 LDA LDA . 
M 8 LDA L 1 303 304 LDA LDA . 
N 8 LDA L 1 304 305 LDA LDA . 
O 9 U10 L 1 305 306 U10 U10 . 
P 7 BCL L 1 306 307 BCL BCL . 
Q 10 PO4 L 1 307 308 PO4 PO4 . 
R 11 HTO L 1 308 309 HTO HTO . 
S 11 HTO L 1 309 310 HTO HTO . 
T 4 GOL L 1 310 311 GOL GOL . 
U 4 GOL L 1 311 312 GOL GOL . 
V 7 BCL M 1 401 313 BCL BCL . 
W 7 BCL M 1 402 401 BCL BCL . 
X 8 LDA M 1 403 402 LDA LDA . 
Y 8 LDA M 1 404 403 LDA LDA . 
Z 12 FE M 1 405 404 FE FE . 
AA 13 BPH M 1 406 405 BPH BPH . 
BA 9 U10 M 1 407 406 U10 U10 . 
CA 14 SPO M 1 408 407 SPO SPO . 
DA 15 CDL M 1 409 408 CDL CDL . 
EA 16 PC1 M 1 410 409 PC1 PC1 . 
FA 17 MG M 1 411 411 MG MG . 
GA 13 BPH M 1 412 412 BPH BPH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CM1 SPO . . . CA 14 42.88 83.288 55.122 1 46.31 ? CM1 SPO 408 M 1 
HETATM 2 O O1 SPO . . . CA 14 43.876 84.32 55.171 1 48.32 ? O1 SPO 408 M 1 
HETATM 3 C C1 SPO . . . CA 14 44.884 84.464 54.141 1 54.88 ? C1 SPO 408 M 1 
HETATM 4 C C2 SPO . . . CA 14 45.473 83.087 53.854 1 54.78 ? C2 SPO 408 M 1 
HETATM 5 C C3 SPO . . . CA 14 45.936 85.473 54.628 1 48.91 ? C3 SPO 408 M 1 
HETATM 6 C C4 SPO . . . CA 14 44.409 84.986 52.777 1 54.9 ? C4 SPO 408 M 1 
HETATM 7 C C5 SPO . . . CA 14 43.019 85.577 52.775 1 56.5 ? C5 SPO 408 M 1 
HETATM 8 C C6 SPO . . . CA 14 42.8 86.477 51.816 1 62.53 ? C6 SPO 408 M 1 
HETATM 9 C C7 SPO . . . CA 14 41.487 87.095 51.548 1 60.82 ? C7 SPO 408 M 1 
HETATM 10 C C8 SPO . . . CA 14 40.344 86.883 52.503 1 57.26 ? C8 SPO 408 M 1 
HETATM 11 C C9 SPO . . . CA 14 41.38 87.706 50.345 1 52.97 ? C9 SPO 408 M 1 
HETATM 12 C C10 SPO . . . CA 14 40.155 88.327 49.831 1 51.28 ? C10 SPO 408 M 1 
HETATM 13 C C11 SPO . . . CA 14 40.173 88.96 48.644 1 47.21 ? C11 SPO 408 M 1 
HETATM 14 C C12 SPO . . . CA 14 38.998 89.614 48.027 1 47.16 ? C12 SPO 408 M 1 
HETATM 15 C C13 SPO . . . CA 14 37.662 89.648 48.722 1 49.03 ? C13 SPO 408 M 1 
HETATM 16 C C14 SPO . . . CA 14 39.127 90.172 46.815 1 45.08 ? C14 SPO 408 M 1 
HETATM 17 C C15 SPO . . . CA 14 37.993 90.801 46.133 1 44.54 ? C15 SPO 408 M 1 
HETATM 18 C C16 SPO . . . CA 14 38.229 91.367 44.956 1 47.08 ? C16 SPO 408 M 1 
HETATM 19 C C17 SPO . . . CA 14 37.218 92.046 44.093 1 45.21 ? C17 SPO 408 M 1 
HETATM 20 C C18 SPO . . . CA 14 35.755 91.934 44.386 1 44.63 ? C18 SPO 408 M 1 
HETATM 21 C C19 SPO . . . CA 14 37.678 92.691 42.994 1 43.51 ? C19 SPO 408 M 1 
HETATM 22 C C20 SPO . . . CA 14 36.814 93.42 42.077 1 42.1 ? C20 SPO 408 M 1 
HETATM 23 C C21 SPO . . . CA 14 37.205 94.251 41.101 1 38.7 ? C21 SPO 408 M 1 
HETATM 24 C C22 SPO . . . CA 14 38.572 94.547 40.764 1 33.98 ? C22 SPO 408 M 1 
HETATM 25 C C23 SPO . . . CA 14 38.939 95.313 39.703 1 35.45 ? C23 SPO 408 M 1 
HETATM 26 C C24 SPO . . . CA 14 37.995 95.983 38.755 1 33.33 ? C24 SPO 408 M 1 
HETATM 27 C C25 SPO . . . CA 14 40.418 95.498 39.48 1 38.22 ? C25 SPO 408 M 1 
HETATM 28 C C26 SPO . . . CA 14 41.059 95.915 38.378 1 37.19 ? C26 SPO 408 M 1 
HETATM 29 C C27 SPO . . . CA 14 42.528 95.951 38.497 1 37.77 ? C27 SPO 408 M 1 
HETATM 30 C C28 SPO . . . CA 14 43.359 96.392 37.549 1 40.06 ? C28 SPO 408 M 1 
HETATM 31 C C29 SPO . . . CA 14 42.882 96.815 36.209 1 42.46 ? C29 SPO 408 M 1 
HETATM 32 C C30 SPO . . . CA 14 44.851 96.42 37.782 1 46.5 ? C30 SPO 408 M 1 
HETATM 33 C C31 SPO . . . CA 14 45.366 97.86 37.695 1 47.48 ? C31 SPO 408 M 1 
HETATM 34 C C32 SPO . . . CA 14 46.774 98.019 38.207 1 50.6 ? C32 SPO 408 M 1 
HETATM 35 C C33 SPO . . . CA 14 47.214 99.074 38.914 1 54.58 ? C33 SPO 408 M 1 
HETATM 36 C C34 SPO . . . CA 14 46.339 100.236 39.217 1 55.67 ? C34 SPO 408 M 1 
HETATM 37 C C35 SPO . . . CA 14 48.655 99.14 39.369 1 61.92 ? C35 SPO 408 M 1 
HETATM 38 C C36 SPO . . . CA 14 49.445 99.89 38.283 1 67.41 ? C36 SPO 408 M 1 
HETATM 39 C C37 SPO . . . CA 14 50.923 99.956 38.623 1 80.96 ? C37 SPO 408 M 1 
HETATM 40 C C38 SPO . . . CA 14 51.936 100.067 37.714 1 88.2 ? C38 SPO 408 M 1 
HETATM 41 C C39 SPO . . . CA 14 51.765 100.141 36.204 1 81.26 ? C39 SPO 408 M 1 
HETATM 42 C C40 SPO . . . CA 14 53.322 100.102 38.295 1 92.47 ? C40 SPO 408 M 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           42 
#