data_4IN7 # _model_server_result.job_id '_d_nQHlOjcTRZBlVkKxK9g' _model_server_result.datetime_utc '2024-11-05 23:51:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4in7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":410}' # _entry.id 4IN7 # _exptl.entry_id 4IN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 790.145 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IN7 _cell.length_a 139.138 _cell.length_b 139.138 _cell.length_c 185.14 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 16 _struct_asym.id EA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 140 H MET 134 1_555 I K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc2 A O ALA 143 H ALA 137 1_555 I K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc3 A O PHE 146 H PHE 140 1_555 I K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc4 B NE2 HIS 191 L HIS 190 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc5 B NE2 HIS 231 L HIS 230 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc6 C OD1 ASN 215 M ASN 214 1_555 FA MG MG . M MG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc7 C NE2 HIS 220 M HIS 219 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc8 C OE2 GLU 235 M GLU 234 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc9 C OE1 GLU 235 M GLU 234 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc10 C NE2 HIS 267 M HIS 266 1_555 Z FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 1030 n n P O14 PC1 doub 1031 n n P O13 PC1 sing 1032 n n P O11 PC1 sing 1033 n n O13 C11 PC1 sing 1034 n n C11 C12 PC1 sing 1035 n n C11 H111 PC1 sing 1036 n n C11 H112 PC1 sing 1037 n n C12 N PC1 sing 1038 n n C12 H121 PC1 sing 1039 n n C12 H122 PC1 sing 1040 n n N C13 PC1 sing 1041 n n N C14 PC1 sing 1042 n n N C15 PC1 sing 1043 n n C13 H131 PC1 sing 1044 n n C13 H132 PC1 sing 1045 n n C13 H133 PC1 sing 1046 n n C14 H141 PC1 sing 1047 n n C14 H142 PC1 sing 1048 n n C14 H143 PC1 sing 1049 n n C15 H151 PC1 sing 1050 n n C15 H152 PC1 sing 1051 n n C15 H153 PC1 sing 1052 n n O11 C1 PC1 sing 1053 n n C1 C2 PC1 sing 1054 n n C1 H11 PC1 sing 1055 n n C1 H12 PC1 sing 1056 n n C2 O21 PC1 sing 1057 n n C2 C3 PC1 sing 1058 n n C2 H2 PC1 sing 1059 n n O21 C21 PC1 sing 1060 n n C21 O22 PC1 doub 1061 n n C21 C22 PC1 sing 1062 n n C22 C23 PC1 sing 1063 n n C22 H221 PC1 sing 1064 n n C22 H222 PC1 sing 1065 n n C23 C24 PC1 sing 1066 n n C23 H231 PC1 sing 1067 n n C23 H232 PC1 sing 1068 n n C24 C25 PC1 sing 1069 n n C24 H241 PC1 sing 1070 n n C24 H242 PC1 sing 1071 n n C25 C26 PC1 sing 1072 n n C25 H251 PC1 sing 1073 n n C25 H252 PC1 sing 1074 n n C26 C27 PC1 sing 1075 n n C26 H261 PC1 sing 1076 n n C26 H262 PC1 sing 1077 n n C27 C28 PC1 sing 1078 n n C27 H271 PC1 sing 1079 n n C27 H272 PC1 sing 1080 n n C28 C29 PC1 sing 1081 n n C28 H281 PC1 sing 1082 n n C28 H282 PC1 sing 1083 n n C29 C2A PC1 sing 1084 n n C29 H291 PC1 sing 1085 n n C29 H292 PC1 sing 1086 n n C2A C2B PC1 sing 1087 n n C2A H2A1 PC1 sing 1088 n n C2A H2A2 PC1 sing 1089 n n C2B C2C PC1 sing 1090 n n C2B H2B1 PC1 sing 1091 n n C2B H2B2 PC1 sing 1092 n n C2C C2D PC1 sing 1093 n n C2C H2C1 PC1 sing 1094 n n C2C H2C2 PC1 sing 1095 n n C2D C2E PC1 sing 1096 n n C2D H2D1 PC1 sing 1097 n n C2D H2D2 PC1 sing 1098 n n C2E C2F PC1 sing 1099 n n C2E H2E1 PC1 sing 1100 n n C2E H2E2 PC1 sing 1101 n n C2F C2G PC1 sing 1102 n n C2F H2F1 PC1 sing 1103 n n C2F H2F2 PC1 sing 1104 n n C2G C2H PC1 sing 1105 n n C2G H2G1 PC1 sing 1106 n n C2G H2G2 PC1 sing 1107 n n C2H C2I PC1 sing 1108 n n C2H H2H1 PC1 sing 1109 n n C2H H2H2 PC1 sing 1110 n n C2I H2I1 PC1 sing 1111 n n C2I H2I2 PC1 sing 1112 n n C2I H2I3 PC1 sing 1113 n n C3 O31 PC1 sing 1114 n n C3 H31 PC1 sing 1115 n n C3 H32 PC1 sing 1116 n n O31 C31 PC1 sing 1117 n n C31 O32 PC1 doub 1118 n n C31 C32 PC1 sing 1119 n n C32 C33 PC1 sing 1120 n n C32 H321 PC1 sing 1121 n n C32 H322 PC1 sing 1122 n n C33 C34 PC1 sing 1123 n n C33 H331 PC1 sing 1124 n n C33 H332 PC1 sing 1125 n n C34 C35 PC1 sing 1126 n n C34 H341 PC1 sing 1127 n n C34 H342 PC1 sing 1128 n n C35 C36 PC1 sing 1129 n n C35 H351 PC1 sing 1130 n n C35 H352 PC1 sing 1131 n n C36 C37 PC1 sing 1132 n n C36 H361 PC1 sing 1133 n n C36 H362 PC1 sing 1134 n n C37 C38 PC1 sing 1135 n n C37 H371 PC1 sing 1136 n n C37 H372 PC1 sing 1137 n n C38 C39 PC1 sing 1138 n n C38 H381 PC1 sing 1139 n n C38 H382 PC1 sing 1140 n n C39 C3A PC1 sing 1141 n n C39 H391 PC1 sing 1142 n n C39 H392 PC1 sing 1143 n n C3A C3B PC1 sing 1144 n n C3A H3A1 PC1 sing 1145 n n C3A H3A2 PC1 sing 1146 n n C3B C3C PC1 sing 1147 n n C3B H3B1 PC1 sing 1148 n n C3B H3B2 PC1 sing 1149 n n C3C C3D PC1 sing 1150 n n C3C H3C1 PC1 sing 1151 n n C3C H3C2 PC1 sing 1152 n n C3D C3E PC1 sing 1153 n n C3D H3D1 PC1 sing 1154 n n C3D H3D2 PC1 sing 1155 n n C3E C3F PC1 sing 1156 n n C3E H3E1 PC1 sing 1157 n n C3E H3E2 PC1 sing 1158 n n C3F C3G PC1 sing 1159 n n C3F H3F1 PC1 sing 1160 n n C3F H3F2 PC1 sing 1161 n n C3G C3H PC1 sing 1162 n n C3G H3G1 PC1 sing 1163 n n C3G H3G2 PC1 sing 1164 n n C3H C3I PC1 sing 1165 n n C3H H3H1 PC1 sing 1166 n n C3H H3H2 PC1 sing 1167 n n C3I H3I1 PC1 sing 1168 n n C3I H3I2 PC1 sing 1169 n n C3I H3I3 PC1 sing 1170 n n # _atom_sites.entry_id 4IN7 _atom_sites.fract_transf_matrix[1][1] 0.007187 _atom_sites.fract_transf_matrix[1][2] 0.004149 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL H 1 301 301 GOL GOL . E 4 GOL H 1 306 301 GOL GOL . F 4 GOL H 1 302 302 GOL GOL . G 4 GOL H 1 303 303 GOL GOL . H 4 GOL H 1 304 304 GOL GOL . I 5 K H 1 305 305 K K . J 6 GGD H 1 307 410 GGD GGD . K 7 BCL L 1 301 302 BCL BCL . L 8 LDA L 1 302 303 LDA LDA . M 8 LDA L 1 303 304 LDA LDA . N 8 LDA L 1 304 305 LDA LDA . O 9 U10 L 1 305 306 U10 U10 . P 7 BCL L 1 306 307 BCL BCL . Q 10 PO4 L 1 307 308 PO4 PO4 . R 11 HTO L 1 308 309 HTO HTO . S 11 HTO L 1 309 310 HTO HTO . T 4 GOL L 1 310 311 GOL GOL . U 4 GOL L 1 311 312 GOL GOL . V 7 BCL M 1 401 313 BCL BCL . W 7 BCL M 1 402 401 BCL BCL . X 8 LDA M 1 403 402 LDA LDA . Y 8 LDA M 1 404 403 LDA LDA . Z 12 FE M 1 405 404 FE FE . AA 13 BPH M 1 406 405 BPH BPH . BA 9 U10 M 1 407 406 U10 U10 . CA 14 SPO M 1 408 407 SPO SPO . DA 15 CDL M 1 409 408 CDL CDL . EA 16 PC1 M 1 410 409 PC1 PC1 . FA 17 MG M 1 411 411 MG MG . GA 13 BPH M 1 412 412 BPH BPH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . EA 16 51.986 65.413 38.512 1 170.44 ? O12 PC1 410 M 1 HETATM 2 P P PC1 . . . EA 16 52.964 66.013 39.49 1 155.16 ? P PC1 410 M 1 HETATM 3 O O14 PC1 . . . EA 16 53.266 67.496 39.408 1 164.24 ? O14 PC1 410 M 1 HETATM 4 O O13 PC1 . . . EA 16 54.424 65.306 39.201 1 145.81 ? O13 PC1 410 M 1 HETATM 5 C C11 PC1 . . . EA 16 55.115 65.401 37.92 1 137.79 ? C11 PC1 410 M 1 HETATM 6 C C12 PC1 . . . EA 16 56.101 64.238 37.632 1 139.71 ? C12 PC1 410 M 1 HETATM 7 N N PC1 . . . EA 16 56.25 63.789 36.205 1 140.29 ? N PC1 410 M 1 HETATM 8 C C13 PC1 . . . EA 16 57.583 63.174 36.03 1 130.39 ? C13 PC1 410 M 1 HETATM 9 C C14 PC1 . . . EA 16 55.237 62.767 35.836 1 119.71 ? C14 PC1 410 M 1 HETATM 10 C C15 PC1 . . . EA 16 56.193 64.924 35.254 1 132.96 ? C15 PC1 410 M 1 HETATM 11 O O11 PC1 . . . EA 16 52.261 65.687 40.947 1 128.96 ? O11 PC1 410 M 1 HETATM 12 C C1 PC1 . . . EA 16 50.822 65.583 41.152 1 115.31 ? C1 PC1 410 M 1 HETATM 13 C C2 PC1 . . . EA 16 50.029 66.901 41.437 1 119.73 ? C2 PC1 410 M 1 HETATM 14 O O21 PC1 . . . EA 16 48.647 66.599 41.063 1 107.62 ? O21 PC1 410 M 1 HETATM 15 C C21 PC1 . . . EA 16 47.926 67.351 40.003 1 104.13 ? C21 PC1 410 M 1 HETATM 16 O O22 PC1 . . . EA 16 48.407 67.378 38.885 1 120.55 ? O22 PC1 410 M 1 HETATM 17 C C22 PC1 . . . EA 16 46.577 68.043 40.24 1 92.67 ? C22 PC1 410 M 1 HETATM 18 C C23 PC1 . . . EA 16 46.151 69.087 39.178 1 80.26 ? C23 PC1 410 M 1 HETATM 19 C C24 PC1 . . . EA 16 44.64 69.384 39.236 1 75.26 ? C24 PC1 410 M 1 HETATM 20 C C25 PC1 . . . EA 16 44.336 70.858 39.47 1 74.4 ? C25 PC1 410 M 1 HETATM 21 C C26 PC1 . . . EA 16 42.831 71.089 39.408 1 74.35 ? C26 PC1 410 M 1 HETATM 22 C C27 PC1 . . . EA 16 42.486 72.563 39.185 1 80.54 ? C27 PC1 410 M 1 HETATM 23 C C28 PC1 . . . EA 16 40.968 72.692 38.94 1 93.42 ? C28 PC1 410 M 1 HETATM 24 C C29 PC1 . . . EA 16 40.451 74.115 38.594 1 95.8 ? C29 PC1 410 M 1 HETATM 25 C C2A PC1 . . . EA 16 39.388 74.172 37.475 1 94.1 ? C2A PC1 410 M 1 HETATM 26 C C2B PC1 . . . EA 16 38.107 74.965 37.761 1 99.09 ? C2B PC1 410 M 1 HETATM 27 C C2C PC1 . . . EA 16 38.373 76.439 38.149 1 109.61 ? C2C PC1 410 M 1 HETATM 28 C C2D PC1 . . . EA 16 38.051 77.531 37.112 1 108.64 ? C2D PC1 410 M 1 HETATM 29 C C2E PC1 . . . EA 16 39.229 78.505 36.982 1 93.38 ? C2E PC1 410 M 1 HETATM 30 C C3 PC1 . . . EA 16 50.669 68.227 40.852 1 123.85 ? C3 PC1 410 M 1 HETATM 31 O O31 PC1 . . . EA 16 50.016 69.51 41.159 1 122.52 ? O31 PC1 410 M 1 HETATM 32 C C31 PC1 . . . EA 16 50.462 70.935 40.992 1 96.23 ? C31 PC1 410 M 1 HETATM 33 O O32 PC1 . . . EA 16 51.551 71.166 40.504 1 82.32 ? O32 PC1 410 M 1 HETATM 34 C C32 PC1 . . . EA 16 49.59 72.125 41.464 1 99.43 ? C32 PC1 410 M 1 HETATM 35 C C33 PC1 . . . EA 16 48.882 73.014 40.397 1 100.1 ? C33 PC1 410 M 1 HETATM 36 C C34 PC1 . . . EA 16 47.45 73.492 40.777 1 93.97 ? C34 PC1 410 M 1 HETATM 37 C C35 PC1 . . . EA 16 47.051 74.845 40.152 1 91.07 ? C35 PC1 410 M 1 HETATM 38 C C36 PC1 . . . EA 16 45.571 74.944 39.678 1 92.02 ? C36 PC1 410 M 1 HETATM 39 C C37 PC1 . . . EA 16 45.308 76.139 38.711 1 84.98 ? C37 PC1 410 M 1 HETATM 40 C C38 PC1 . . . EA 16 43.837 76.55 38.406 1 82.61 ? C38 PC1 410 M 1 HETATM 41 C C39 PC1 . . . EA 16 43.724 78.04 37.993 1 78.29 ? C39 PC1 410 M 1 HETATM 42 C C3A PC1 . . . EA 16 42.322 78.554 37.624 1 74.15 ? C3A PC1 410 M 1 HETATM 43 C C3B PC1 . . . EA 16 42.322 80.043 37.251 1 61.75 ? C3B PC1 410 M 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #