data_4IN9 # _model_server_result.job_id KgiR6Aaz2wd-nPCXvZA1HA _model_server_result.datetime_utc '2025-06-22 20:33:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4in9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":308}' # _entry.id 4IN9 # _exptl.entry_id 4IN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IN9 _cell.length_a 86.05 _cell.length_b 86.05 _cell.length_c 49.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 41 A SER 75 1_555 E K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc2 A OG SER 41 A SER 75 1_555 E K K . A K 303 1_555 ? A ? ? ? ? ? ? ? ? ? ? 3.304 ? metalc ? metalc3 A O SER 44 A SER 78 1_555 E K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc4 A O LEU 46 A LEU 80 1_555 E K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc5 A NE2 HIS 68 A HIS 102 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc6 A OD2 ASP 70 A ASP 104 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc7 A O PHE 74 A PHE 108 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc8 A NE2 HIS 83 A HIS 117 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc9 A ND1 HIS 99 A HIS 133 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc10 A NE2 HIS 121 A HIS 155 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc11 A NE2 HIS 125 A HIS 159 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc12 A NE2 HIS 131 A HIS 165 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc13 C ZN ZN . A ZN 301 1_555 B N SER 1 B SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc14 C ZN ZN . A ZN 301 1_555 B O SER 1 B SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc15 E K K . A K 303 1_555 L O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc16 E K K . A K 303 1_555 L O HOH . A HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? metalc ? metalc17 E K K . A K 303 1_555 L O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc18 F NA NA . A NA 304 1_555 I O3 GOL . A GOL 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc19 F NA NA . A NA 304 1_555 L O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc20 F NA NA . A NA 304 1_555 L O HOH . A HOH 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc21 F NA NA . A NA 304 1_555 L O HOH . A HOH 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc22 F NA NA . A NA 304 1_555 L O HOH . A HOH 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4IN9 _atom_sites.fract_transf_matrix[1][1] 0.011621 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 301 999 ZN ZN . D 3 ZN A 1 302 998 ZN ZN . E 4 K A 1 303 997 K K . F 5 NA A 1 304 1 NA NA . G 6 GOL A 1 305 2 GOL GOL . H 6 GOL A 1 306 3 GOL GOL . I 6 GOL A 1 307 4 GOL GOL . J 6 GOL A 1 308 5 GOL GOL . K 6 GOL A 1 309 6 GOL GOL . L 7 HOH A 1 401 7 HOH HOH . L 7 HOH A 2 402 8 HOH HOH . L 7 HOH A 3 403 9 HOH HOH . L 7 HOH A 4 404 10 HOH HOH . L 7 HOH A 5 405 11 HOH HOH . L 7 HOH A 6 406 12 HOH HOH . L 7 HOH A 7 407 13 HOH HOH . L 7 HOH A 8 408 14 HOH HOH . L 7 HOH A 9 409 15 HOH HOH . L 7 HOH A 10 410 16 HOH HOH . L 7 HOH A 11 411 17 HOH HOH . L 7 HOH A 12 412 18 HOH HOH . L 7 HOH A 13 413 19 HOH HOH . L 7 HOH A 14 414 20 HOH HOH . L 7 HOH A 15 415 21 HOH HOH . L 7 HOH A 16 416 22 HOH HOH . L 7 HOH A 17 417 23 HOH HOH . L 7 HOH A 18 418 24 HOH HOH . L 7 HOH A 19 419 25 HOH HOH . L 7 HOH A 20 420 26 HOH HOH . L 7 HOH A 21 421 27 HOH HOH . L 7 HOH A 22 422 28 HOH HOH . L 7 HOH A 23 423 30 HOH HOH . L 7 HOH A 24 424 31 HOH HOH . L 7 HOH A 25 425 32 HOH HOH . L 7 HOH A 26 426 33 HOH HOH . L 7 HOH A 27 427 34 HOH HOH . L 7 HOH A 28 428 35 HOH HOH . L 7 HOH A 29 429 36 HOH HOH . L 7 HOH A 30 430 37 HOH HOH . L 7 HOH A 31 431 38 HOH HOH . L 7 HOH A 32 432 40 HOH HOH . L 7 HOH A 33 433 41 HOH HOH . L 7 HOH A 34 434 42 HOH HOH . L 7 HOH A 35 435 43 HOH HOH . L 7 HOH A 36 436 44 HOH HOH . L 7 HOH A 37 437 45 HOH HOH . L 7 HOH A 38 438 46 HOH HOH . L 7 HOH A 39 439 47 HOH HOH . L 7 HOH A 40 440 48 HOH HOH . L 7 HOH A 41 441 49 HOH HOH . L 7 HOH A 42 442 50 HOH HOH . L 7 HOH A 43 443 51 HOH HOH . L 7 HOH A 44 444 52 HOH HOH . L 7 HOH A 45 445 53 HOH HOH . L 7 HOH A 46 446 54 HOH HOH . L 7 HOH A 47 447 55 HOH HOH . L 7 HOH A 48 448 56 HOH HOH . L 7 HOH A 49 449 57 HOH HOH . L 7 HOH A 50 450 58 HOH HOH . L 7 HOH A 51 451 59 HOH HOH . L 7 HOH A 52 452 60 HOH HOH . L 7 HOH A 53 453 61 HOH HOH . L 7 HOH A 54 454 62 HOH HOH . L 7 HOH A 55 455 63 HOH HOH . L 7 HOH A 56 456 64 HOH HOH . L 7 HOH A 57 457 65 HOH HOH . L 7 HOH A 58 458 66 HOH HOH . L 7 HOH A 59 459 67 HOH HOH . L 7 HOH A 60 460 68 HOH HOH . L 7 HOH A 61 461 69 HOH HOH . L 7 HOH A 62 462 70 HOH HOH . L 7 HOH A 63 463 71 HOH HOH . L 7 HOH A 64 464 72 HOH HOH . L 7 HOH A 65 465 74 HOH HOH . L 7 HOH A 66 466 75 HOH HOH . L 7 HOH A 67 467 76 HOH HOH . L 7 HOH A 68 468 77 HOH HOH . L 7 HOH A 69 469 78 HOH HOH . L 7 HOH A 70 470 79 HOH HOH . L 7 HOH A 71 471 80 HOH HOH . L 7 HOH A 72 472 81 HOH HOH . L 7 HOH A 73 473 82 HOH HOH . L 7 HOH A 74 474 83 HOH HOH . L 7 HOH A 75 475 84 HOH HOH . L 7 HOH A 76 476 85 HOH HOH . L 7 HOH A 77 477 86 HOH HOH . L 7 HOH A 78 478 87 HOH HOH . L 7 HOH A 79 479 88 HOH HOH . L 7 HOH A 80 480 89 HOH HOH . L 7 HOH A 81 481 90 HOH HOH . L 7 HOH A 82 482 91 HOH HOH . L 7 HOH A 83 483 92 HOH HOH . L 7 HOH A 84 484 93 HOH HOH . L 7 HOH A 85 485 94 HOH HOH . L 7 HOH A 86 486 95 HOH HOH . L 7 HOH A 87 487 96 HOH HOH . L 7 HOH A 88 488 97 HOH HOH . L 7 HOH A 89 489 98 HOH HOH . L 7 HOH A 90 490 99 HOH HOH . L 7 HOH A 91 491 100 HOH HOH . L 7 HOH A 92 492 101 HOH HOH . L 7 HOH A 93 493 102 HOH HOH . L 7 HOH A 94 494 103 HOH HOH . L 7 HOH A 95 495 104 HOH HOH . L 7 HOH A 96 496 105 HOH HOH . L 7 HOH A 97 497 106 HOH HOH . L 7 HOH A 98 498 107 HOH HOH . L 7 HOH A 99 499 108 HOH HOH . L 7 HOH A 100 500 109 HOH HOH . L 7 HOH A 101 501 110 HOH HOH . L 7 HOH A 102 502 111 HOH HOH . L 7 HOH A 103 503 112 HOH HOH . L 7 HOH A 104 504 113 HOH HOH . L 7 HOH A 105 505 114 HOH HOH . L 7 HOH A 106 506 115 HOH HOH . L 7 HOH A 107 507 116 HOH HOH . L 7 HOH A 108 508 117 HOH HOH . L 7 HOH A 109 509 118 HOH HOH . L 7 HOH A 110 510 119 HOH HOH . L 7 HOH A 111 511 120 HOH HOH . L 7 HOH A 112 512 121 HOH HOH . L 7 HOH A 113 513 122 HOH HOH . L 7 HOH A 114 514 123 HOH HOH . L 7 HOH A 115 515 124 HOH HOH . L 7 HOH A 116 516 125 HOH HOH . L 7 HOH A 117 517 126 HOH HOH . L 7 HOH A 118 518 127 HOH HOH . L 7 HOH A 119 519 128 HOH HOH . L 7 HOH A 120 520 129 HOH HOH . L 7 HOH A 121 521 130 HOH HOH . L 7 HOH A 122 522 131 HOH HOH . L 7 HOH A 123 523 132 HOH HOH . L 7 HOH A 124 524 133 HOH HOH . L 7 HOH A 125 525 134 HOH HOH . L 7 HOH A 126 526 135 HOH HOH . L 7 HOH A 127 527 136 HOH HOH . L 7 HOH A 128 528 137 HOH HOH . L 7 HOH A 129 529 138 HOH HOH . L 7 HOH A 130 530 139 HOH HOH . L 7 HOH A 131 531 140 HOH HOH . L 7 HOH A 132 532 141 HOH HOH . L 7 HOH A 133 533 142 HOH HOH . L 7 HOH A 134 534 143 HOH HOH . L 7 HOH A 135 535 144 HOH HOH . L 7 HOH A 136 536 145 HOH HOH . L 7 HOH A 137 537 146 HOH HOH . L 7 HOH A 138 538 147 HOH HOH . L 7 HOH A 139 539 148 HOH HOH . L 7 HOH A 140 540 149 HOH HOH . L 7 HOH A 141 541 150 HOH HOH . L 7 HOH A 142 542 151 HOH HOH . L 7 HOH A 143 543 152 HOH HOH . L 7 HOH A 144 544 153 HOH HOH . L 7 HOH A 145 545 154 HOH HOH . L 7 HOH A 146 546 155 HOH HOH . L 7 HOH A 147 547 156 HOH HOH . L 7 HOH A 148 548 157 HOH HOH . L 7 HOH A 149 549 158 HOH HOH . L 7 HOH A 150 550 159 HOH HOH . L 7 HOH A 151 551 160 HOH HOH . L 7 HOH A 152 552 161 HOH HOH . L 7 HOH A 153 553 162 HOH HOH . L 7 HOH A 154 554 163 HOH HOH . L 7 HOH A 155 555 164 HOH HOH . L 7 HOH A 156 556 165 HOH HOH . L 7 HOH A 157 557 166 HOH HOH . L 7 HOH A 158 558 167 HOH HOH . L 7 HOH A 159 559 168 HOH HOH . L 7 HOH A 160 560 169 HOH HOH . L 7 HOH A 161 561 170 HOH HOH . L 7 HOH A 162 562 171 HOH HOH . L 7 HOH A 163 563 172 HOH HOH . L 7 HOH A 164 564 173 HOH HOH . L 7 HOH A 165 565 174 HOH HOH . L 7 HOH A 166 566 175 HOH HOH . L 7 HOH A 167 567 176 HOH HOH . L 7 HOH A 168 568 177 HOH HOH . L 7 HOH A 169 569 178 HOH HOH . L 7 HOH A 170 570 179 HOH HOH . L 7 HOH A 171 571 180 HOH HOH . L 7 HOH A 172 572 181 HOH HOH . L 7 HOH A 173 573 183 HOH HOH . L 7 HOH A 174 574 184 HOH HOH . L 7 HOH A 175 575 185 HOH HOH . L 7 HOH A 176 576 186 HOH HOH . L 7 HOH A 177 577 187 HOH HOH . L 7 HOH A 178 578 188 HOH HOH . L 7 HOH A 179 579 189 HOH HOH . L 7 HOH A 180 580 190 HOH HOH . L 7 HOH A 181 581 191 HOH HOH . L 7 HOH A 182 582 192 HOH HOH . L 7 HOH A 183 583 193 HOH HOH . L 7 HOH A 184 584 194 HOH HOH . L 7 HOH A 185 585 195 HOH HOH . L 7 HOH A 186 586 196 HOH HOH . L 7 HOH A 187 587 197 HOH HOH . L 7 HOH A 188 588 198 HOH HOH . L 7 HOH A 189 589 199 HOH HOH . L 7 HOH A 190 590 200 HOH HOH . L 7 HOH A 191 591 201 HOH HOH . L 7 HOH A 192 592 202 HOH HOH . L 7 HOH A 193 593 203 HOH HOH . L 7 HOH A 194 594 204 HOH HOH . L 7 HOH A 195 595 205 HOH HOH . L 7 HOH A 196 596 206 HOH HOH . L 7 HOH A 197 597 207 HOH HOH . L 7 HOH A 198 598 208 HOH HOH . L 7 HOH A 199 599 209 HOH HOH . L 7 HOH A 200 600 210 HOH HOH . L 7 HOH A 201 601 211 HOH HOH . L 7 HOH A 202 602 212 HOH HOH . L 7 HOH A 203 603 213 HOH HOH . L 7 HOH A 204 604 214 HOH HOH . L 7 HOH A 205 605 29 HOH HOH . M 7 HOH B 1 101 39 HOH HOH . M 7 HOH B 2 102 73 HOH HOH . M 7 HOH B 3 103 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 6 91.113 118.558 -7.371 1 27.98 ? C1 GOL 308 A 1 HETATM 2 O O1 GOL . . . J 6 90.308 117.635 -6.645 1 32.14 ? O1 GOL 308 A 1 HETATM 3 C C2 GOL . . . J 6 92.36 117.889 -7.903 1 25.42 ? C2 GOL 308 A 1 HETATM 4 O O2 GOL . . . J 6 93.119 117.356 -6.821 1 25.69 ? O2 GOL 308 A 1 HETATM 5 C C3 GOL . . . J 6 92.113 116.809 -8.93 1 25.67 ? C3 GOL 308 A 1 HETATM 6 O O3 GOL . . . J 6 93.358 116.312 -9.428 1 23.89 ? O3 GOL 308 A 1 # _model_server_stats.io_time_ms 107 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 711 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #