data_4INI # _model_server_result.job_id 79NqtQ_5Z6hBX_Dr4sKYNQ _model_server_result.datetime_utc '2025-06-23 08:09:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ini # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4INI # _exptl.entry_id 4INI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4INI _cell.length_a 37.572 _cell.length_b 72.77 _cell.length_c 77.724 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4INI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 50 n n P O2P AMP sing 51 n n P O3P AMP sing 52 n n P O5' AMP sing 53 n n O2P HOP2 AMP sing 54 n n O3P HOP3 AMP sing 55 n n O5' C5' AMP sing 56 n n C5' C4' AMP sing 57 n n C5' "H5'1" AMP sing 58 n n C5' "H5'2" AMP sing 59 n n C4' O4' AMP sing 60 n n C4' C3' AMP sing 61 n n C4' H4' AMP sing 62 n n O4' C1' AMP sing 63 n n C3' O3' AMP sing 64 n n C3' C2' AMP sing 65 n n C3' H3' AMP sing 66 n n O3' HO3' AMP sing 67 n n C2' O2' AMP sing 68 n n C2' C1' AMP sing 69 n n C2' H2' AMP sing 70 n n O2' HO2' AMP sing 71 n n C1' N9 AMP sing 72 n n C1' H1' AMP sing 73 n n N9 C8 AMP sing 74 n y N9 C4 AMP sing 75 n y C8 N7 AMP doub 76 n y C8 H8 AMP sing 77 n n N7 C5 AMP sing 78 n y C5 C6 AMP sing 79 n y C5 C4 AMP doub 80 n y C6 N6 AMP sing 81 n n C6 N1 AMP doub 82 n y N6 HN61 AMP sing 83 n n N6 HN62 AMP sing 84 n n N1 C2 AMP sing 85 n y C2 N3 AMP doub 86 n y C2 H2 AMP sing 87 n n N3 C4 AMP sing 88 n y # _atom_sites.entry_id 4INI _atom_sites.fract_transf_matrix[1][1] 0.026616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 201 1 AMP AMP . D 3 1PE A 1 202 1 1PE 1PE . E 4 PEG A 1 203 1 PEG PEG . F 2 AMP B 1 201 1 AMP AMP . G 5 PG5 B 1 202 1 PG5 PG5 . H 6 HOH A 1 301 3 HOH HOH . H 6 HOH A 2 302 7 HOH HOH . H 6 HOH A 3 303 8 HOH HOH . H 6 HOH A 4 304 9 HOH HOH . H 6 HOH A 5 305 10 HOH HOH . H 6 HOH A 6 306 12 HOH HOH . H 6 HOH A 7 307 13 HOH HOH . H 6 HOH A 8 308 15 HOH HOH . H 6 HOH A 9 309 17 HOH HOH . H 6 HOH A 10 310 26 HOH HOH . H 6 HOH A 11 311 32 HOH HOH . H 6 HOH A 12 312 33 HOH HOH . H 6 HOH A 13 313 35 HOH HOH . H 6 HOH A 14 314 36 HOH HOH . H 6 HOH A 15 315 40 HOH HOH . H 6 HOH A 16 316 41 HOH HOH . H 6 HOH A 17 317 42 HOH HOH . H 6 HOH A 18 318 47 HOH HOH . H 6 HOH A 19 319 55 HOH HOH . H 6 HOH A 20 320 60 HOH HOH . H 6 HOH A 21 321 61 HOH HOH . H 6 HOH A 22 322 62 HOH HOH . H 6 HOH A 23 323 66 HOH HOH . H 6 HOH A 24 324 71 HOH HOH . H 6 HOH A 25 325 72 HOH HOH . H 6 HOH A 26 326 82 HOH HOH . H 6 HOH A 27 327 86 HOH HOH . H 6 HOH A 28 328 88 HOH HOH . H 6 HOH A 29 329 90 HOH HOH . H 6 HOH A 30 330 91 HOH HOH . H 6 HOH A 31 331 96 HOH HOH . H 6 HOH A 32 332 99 HOH HOH . H 6 HOH A 33 333 102 HOH HOH . H 6 HOH A 34 334 104 HOH HOH . H 6 HOH A 35 335 108 HOH HOH . H 6 HOH A 36 336 109 HOH HOH . H 6 HOH A 37 337 113 HOH HOH . H 6 HOH A 38 338 114 HOH HOH . H 6 HOH A 39 339 121 HOH HOH . H 6 HOH A 40 340 122 HOH HOH . H 6 HOH A 41 341 124 HOH HOH . H 6 HOH A 42 342 126 HOH HOH . H 6 HOH A 43 343 130 HOH HOH . H 6 HOH A 44 344 131 HOH HOH . H 6 HOH A 45 345 136 HOH HOH . H 6 HOH A 46 346 137 HOH HOH . H 6 HOH A 47 347 138 HOH HOH . H 6 HOH A 48 348 140 HOH HOH . H 6 HOH A 49 349 141 HOH HOH . H 6 HOH A 50 350 143 HOH HOH . H 6 HOH A 51 351 146 HOH HOH . H 6 HOH A 52 352 152 HOH HOH . H 6 HOH A 53 353 153 HOH HOH . H 6 HOH A 54 354 158 HOH HOH . H 6 HOH A 55 355 159 HOH HOH . H 6 HOH A 56 356 160 HOH HOH . H 6 HOH A 57 357 161 HOH HOH . H 6 HOH A 58 358 162 HOH HOH . H 6 HOH A 59 359 167 HOH HOH . H 6 HOH A 60 360 177 HOH HOH . H 6 HOH A 61 361 181 HOH HOH . H 6 HOH A 62 362 183 HOH HOH . H 6 HOH A 63 363 189 HOH HOH . H 6 HOH A 64 364 192 HOH HOH . H 6 HOH A 65 365 193 HOH HOH . H 6 HOH A 66 366 194 HOH HOH . H 6 HOH A 67 367 195 HOH HOH . H 6 HOH A 68 368 196 HOH HOH . H 6 HOH A 69 369 200 HOH HOH . H 6 HOH A 70 370 201 HOH HOH . H 6 HOH A 71 371 207 HOH HOH . H 6 HOH A 72 372 208 HOH HOH . I 6 HOH B 1 301 1 HOH HOH . I 6 HOH B 2 302 2 HOH HOH . I 6 HOH B 3 303 4 HOH HOH . I 6 HOH B 4 304 5 HOH HOH . I 6 HOH B 5 305 6 HOH HOH . I 6 HOH B 6 306 11 HOH HOH . I 6 HOH B 7 307 14 HOH HOH . I 6 HOH B 8 308 16 HOH HOH . I 6 HOH B 9 309 18 HOH HOH . I 6 HOH B 10 310 19 HOH HOH . I 6 HOH B 11 311 20 HOH HOH . I 6 HOH B 12 312 21 HOH HOH . I 6 HOH B 13 313 22 HOH HOH . I 6 HOH B 14 314 23 HOH HOH . I 6 HOH B 15 315 24 HOH HOH . I 6 HOH B 16 316 25 HOH HOH . I 6 HOH B 17 317 27 HOH HOH . I 6 HOH B 18 318 28 HOH HOH . I 6 HOH B 19 319 29 HOH HOH . I 6 HOH B 20 320 30 HOH HOH . I 6 HOH B 21 321 31 HOH HOH . I 6 HOH B 22 322 34 HOH HOH . I 6 HOH B 23 323 37 HOH HOH . I 6 HOH B 24 324 38 HOH HOH . I 6 HOH B 25 325 39 HOH HOH . I 6 HOH B 26 326 43 HOH HOH . I 6 HOH B 27 327 44 HOH HOH . I 6 HOH B 28 328 45 HOH HOH . I 6 HOH B 29 329 46 HOH HOH . I 6 HOH B 30 330 48 HOH HOH . I 6 HOH B 31 331 49 HOH HOH . I 6 HOH B 32 332 50 HOH HOH . I 6 HOH B 33 333 51 HOH HOH . I 6 HOH B 34 334 52 HOH HOH . I 6 HOH B 35 335 53 HOH HOH . I 6 HOH B 36 336 54 HOH HOH . I 6 HOH B 37 337 56 HOH HOH . I 6 HOH B 38 338 57 HOH HOH . I 6 HOH B 39 339 58 HOH HOH . I 6 HOH B 40 340 59 HOH HOH . I 6 HOH B 41 341 63 HOH HOH . I 6 HOH B 42 342 64 HOH HOH . I 6 HOH B 43 343 65 HOH HOH . I 6 HOH B 44 344 67 HOH HOH . I 6 HOH B 45 345 68 HOH HOH . I 6 HOH B 46 346 69 HOH HOH . I 6 HOH B 47 347 70 HOH HOH . I 6 HOH B 48 348 73 HOH HOH . I 6 HOH B 49 349 74 HOH HOH . I 6 HOH B 50 350 75 HOH HOH . I 6 HOH B 51 351 76 HOH HOH . I 6 HOH B 52 352 77 HOH HOH . I 6 HOH B 53 353 78 HOH HOH . I 6 HOH B 54 354 79 HOH HOH . I 6 HOH B 55 355 80 HOH HOH . I 6 HOH B 56 356 81 HOH HOH . I 6 HOH B 57 357 83 HOH HOH . I 6 HOH B 58 358 84 HOH HOH . I 6 HOH B 59 359 85 HOH HOH . I 6 HOH B 60 360 87 HOH HOH . I 6 HOH B 61 361 89 HOH HOH . I 6 HOH B 62 362 92 HOH HOH . I 6 HOH B 63 363 93 HOH HOH . I 6 HOH B 64 364 94 HOH HOH . I 6 HOH B 65 365 95 HOH HOH . I 6 HOH B 66 366 97 HOH HOH . I 6 HOH B 67 367 98 HOH HOH . I 6 HOH B 68 368 100 HOH HOH . I 6 HOH B 69 369 101 HOH HOH . I 6 HOH B 70 370 103 HOH HOH . I 6 HOH B 71 371 105 HOH HOH . I 6 HOH B 72 372 106 HOH HOH . I 6 HOH B 73 373 107 HOH HOH . I 6 HOH B 74 374 110 HOH HOH . I 6 HOH B 75 375 111 HOH HOH . I 6 HOH B 76 376 112 HOH HOH . I 6 HOH B 77 377 115 HOH HOH . I 6 HOH B 78 378 116 HOH HOH . I 6 HOH B 79 379 117 HOH HOH . I 6 HOH B 80 380 118 HOH HOH . I 6 HOH B 81 381 119 HOH HOH . I 6 HOH B 82 382 120 HOH HOH . I 6 HOH B 83 383 123 HOH HOH . I 6 HOH B 84 384 125 HOH HOH . I 6 HOH B 85 385 127 HOH HOH . I 6 HOH B 86 386 128 HOH HOH . I 6 HOH B 87 387 129 HOH HOH . I 6 HOH B 88 388 132 HOH HOH . I 6 HOH B 89 389 133 HOH HOH . I 6 HOH B 90 390 134 HOH HOH . I 6 HOH B 91 391 135 HOH HOH . I 6 HOH B 92 392 139 HOH HOH . I 6 HOH B 93 393 142 HOH HOH . I 6 HOH B 94 394 144 HOH HOH . I 6 HOH B 95 395 145 HOH HOH . I 6 HOH B 96 396 147 HOH HOH . I 6 HOH B 97 397 148 HOH HOH . I 6 HOH B 98 398 149 HOH HOH . I 6 HOH B 99 399 150 HOH HOH . I 6 HOH B 100 400 151 HOH HOH . I 6 HOH B 101 401 154 HOH HOH . I 6 HOH B 102 402 155 HOH HOH . I 6 HOH B 103 403 156 HOH HOH . I 6 HOH B 104 404 157 HOH HOH . I 6 HOH B 105 405 163 HOH HOH . I 6 HOH B 106 406 164 HOH HOH . I 6 HOH B 107 407 165 HOH HOH . I 6 HOH B 108 408 166 HOH HOH . I 6 HOH B 109 409 168 HOH HOH . I 6 HOH B 110 410 169 HOH HOH . I 6 HOH B 111 411 170 HOH HOH . I 6 HOH B 112 412 171 HOH HOH . I 6 HOH B 113 413 172 HOH HOH . I 6 HOH B 114 414 173 HOH HOH . I 6 HOH B 115 415 174 HOH HOH . I 6 HOH B 116 416 175 HOH HOH . I 6 HOH B 117 417 176 HOH HOH . I 6 HOH B 118 418 178 HOH HOH . I 6 HOH B 119 419 179 HOH HOH . I 6 HOH B 120 420 180 HOH HOH . I 6 HOH B 121 421 182 HOH HOH . I 6 HOH B 122 422 184 HOH HOH . I 6 HOH B 123 423 185 HOH HOH . I 6 HOH B 124 424 186 HOH HOH . I 6 HOH B 125 425 187 HOH HOH . I 6 HOH B 126 426 188 HOH HOH . I 6 HOH B 127 427 190 HOH HOH . I 6 HOH B 128 428 191 HOH HOH . I 6 HOH B 129 429 197 HOH HOH . I 6 HOH B 130 430 198 HOH HOH . I 6 HOH B 131 431 199 HOH HOH . I 6 HOH B 132 432 203 HOH HOH . I 6 HOH B 133 433 204 HOH HOH . I 6 HOH B 134 434 205 HOH HOH . I 6 HOH B 135 435 206 HOH HOH . I 6 HOH B 136 436 209 HOH HOH . I 6 HOH B 137 437 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 2 -18.538 -0.154 -20.251 1 19.51 ? P AMP 201 A 1 HETATM 2 O O1P AMP . . . C 2 -17.693 -0.444 -19.036 1 19.71 ? O1P AMP 201 A 1 HETATM 3 O O2P AMP . . . C 2 -17.983 -0.674 -21.548 1 21.03 ? O2P AMP 201 A 1 HETATM 4 O O3P AMP . . . C 2 -20.001 -0.511 -20.065 1 20.71 ? O3P AMP 201 A 1 HETATM 5 O O5' AMP . . . C 2 -18.501 1.436 -20.331 1 18.07 ? O5' AMP 201 A 1 HETATM 6 C C5' AMP . . . C 2 -19.099 2.13 -21.418 1 21.1 ? C5' AMP 201 A 1 HETATM 7 C C4' AMP . . . C 2 -19.929 3.284 -20.912 1 17.26 ? C4' AMP 201 A 1 HETATM 8 O O4' AMP . . . C 2 -20.226 4.173 -22.019 1 21.18 ? O4' AMP 201 A 1 HETATM 9 C C3' AMP . . . C 2 -21.285 2.874 -20.308 1 16.94 ? C3' AMP 201 A 1 HETATM 10 O O3' AMP . . . C 2 -21.374 3.291 -18.943 1 20.81 ? O3' AMP 201 A 1 HETATM 11 C C2' AMP . . . C 2 -22.322 3.62 -21.17 1 20.42 ? C2' AMP 201 A 1 HETATM 12 O O2' AMP . . . C 2 -23.442 4.13 -20.478 1 21.67 ? O2' AMP 201 A 1 HETATM 13 C C1' AMP . . . C 2 -21.493 4.731 -21.8 1 20.93 ? C1' AMP 201 A 1 HETATM 14 N N9 AMP . . . C 2 -22.048 5.239 -23.053 1 19.95 ? N9 AMP 201 A 1 HETATM 15 C C8 AMP . . . C 2 -22.678 4.538 -24.01 1 20.51 ? C8 AMP 201 A 1 HETATM 16 N N7 AMP . . . C 2 -23.103 5.357 -25.001 1 20.13 ? N7 AMP 201 A 1 HETATM 17 C C5 AMP . . . C 2 -22.75 6.608 -24.659 1 20 ? C5 AMP 201 A 1 HETATM 18 C C6 AMP . . . C 2 -22.897 7.945 -25.253 1 23.08 ? C6 AMP 201 A 1 HETATM 19 N N6 AMP . . . C 2 -23.533 8.091 -26.442 1 22.28 ? N6 AMP 201 A 1 HETATM 20 N N1 AMP . . . C 2 -22.391 8.994 -24.57 1 20.48 ? N1 AMP 201 A 1 HETATM 21 C C2 AMP . . . C 2 -21.759 8.852 -23.389 1 21.24 ? C2 AMP 201 A 1 HETATM 22 N N3 AMP . . . C 2 -21.6 7.66 -22.789 1 20.66 ? N3 AMP 201 A 1 HETATM 23 C C4 AMP . . . C 2 -22.067 6.531 -23.369 1 19.34 ? C4 AMP 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #