data_4INJ # _model_server_result.job_id Rx4wtIbbS5wrlLNm-4C4tA _model_server_result.datetime_utc '2025-03-06 07:50:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4inj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 4INJ # _exptl.entry_id 4INJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 346.32 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDRO-2-FURANYL]METHYL SULFAMATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4INJ _cell.length_a 92.242 _cell.length_b 92.242 _cell.length_c 205.776 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4INJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG MG . A MG 402 1_555 L O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc2 D MG MG . A MG 402 1_555 L O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc3 D MG MG . A MG 402 1_555 M O HOH . B HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc4 D MG MG . A MG 402 1_555 M O HOH . B HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc5 D MG MG . A MG 402 1_555 M O HOH . B HOH 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc6 D MG MG . A MG 402 1_555 M O HOH . B HOH 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? # _chem_comp.formula 'C10 H14 N6 O6 S' _chem_comp.formula_weight 346.32 _chem_comp.id LMS _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDRO-2-FURANYL]METHYL SULFAMATE' _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1' N9 LMS sing 207 n n N9 C8 LMS sing 208 n y C8 N7 LMS doub 209 n y N7 C5 LMS sing 210 n y C5 C6 LMS doub 211 n y C6 N6 LMS sing 212 n n C6 N1 LMS sing 213 n y N1 C2 LMS doub 214 n y C2 N3 LMS sing 215 n y N9 C4 LMS sing 216 n y C5 C4 LMS sing 217 n y N3 C4 LMS doub 218 n y O5' S LMS sing 219 n n O1P S LMS doub 220 n n O2P S LMS doub 221 n n N S LMS sing 222 n n O3' HA LMS sing 223 n n O2' HB LMS sing 224 n n C8 H8 LMS sing 225 n n C2 H2 LMS sing 226 n n O5' C5' LMS sing 227 n n C5' C4' LMS sing 228 n n C4' O4' LMS sing 229 n n C4' C3' LMS sing 230 n n C3' O3' LMS sing 231 n n C3' C2' LMS sing 232 n n C2' O2' LMS sing 233 n n O4' C1' LMS sing 234 n n C2' C1' LMS sing 235 n n C5' "H5'1" LMS sing 236 n n C5' "H5'2" LMS sing 237 n n C4' H4' LMS sing 238 n n C3' H3' LMS sing 239 n n C2' H2' LMS sing 240 n n C1' H1' LMS sing 241 n n N6 H6N1 LMS sing 242 n n N6 H6N2 LMS sing 243 n n N HN1 LMS sing 244 n n N HN2 LMS sing 245 n n # _atom_sites.entry_id 4INJ _atom_sites.fract_transf_matrix[1][1] 0.010841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LMS A 1 401 442 LMS A5A . D 3 MG A 1 402 1 MG MG . E 4 GOL A 1 404 6 GOL GOL . F 2 LMS B 1 401 442 LMS A5A . G 5 PEG B 1 402 2 PEG PEG . H 4 GOL B 1 403 3 GOL GOL . I 4 GOL B 1 404 4 GOL GOL . J 4 GOL B 1 405 5 GOL GOL . K 4 GOL B 1 406 7 GOL GOL . L 6 HOH A 1 501 1 HOH HOH . L 6 HOH A 2 502 2 HOH HOH . L 6 HOH A 3 503 3 HOH HOH . L 6 HOH A 4 504 5 HOH HOH . L 6 HOH A 5 505 6 HOH HOH . L 6 HOH A 6 506 7 HOH HOH . L 6 HOH A 7 507 8 HOH HOH . L 6 HOH A 8 508 10 HOH HOH . L 6 HOH A 9 509 11 HOH HOH . L 6 HOH A 10 510 12 HOH HOH . L 6 HOH A 11 511 16 HOH HOH . L 6 HOH A 12 512 18 HOH HOH . L 6 HOH A 13 513 20 HOH HOH . L 6 HOH A 14 514 28 HOH HOH . L 6 HOH A 15 515 29 HOH HOH . L 6 HOH A 16 516 37 HOH HOH . L 6 HOH A 17 517 40 HOH HOH . L 6 HOH A 18 518 41 HOH HOH . L 6 HOH A 19 519 42 HOH HOH . L 6 HOH A 20 520 44 HOH HOH . L 6 HOH A 21 521 49 HOH HOH . L 6 HOH A 22 522 50 HOH HOH . L 6 HOH A 23 523 52 HOH HOH . L 6 HOH A 24 524 53 HOH HOH . L 6 HOH A 25 525 58 HOH HOH . L 6 HOH A 26 526 59 HOH HOH . L 6 HOH A 27 527 60 HOH HOH . L 6 HOH A 28 528 61 HOH HOH . L 6 HOH A 29 529 63 HOH HOH . L 6 HOH A 30 530 64 HOH HOH . L 6 HOH A 31 531 67 HOH HOH . L 6 HOH A 32 532 68 HOH HOH . L 6 HOH A 33 533 71 HOH HOH . L 6 HOH A 34 534 74 HOH HOH . L 6 HOH A 35 535 75 HOH HOH . L 6 HOH A 36 536 77 HOH HOH . L 6 HOH A 37 537 78 HOH HOH . L 6 HOH A 38 538 79 HOH HOH . L 6 HOH A 39 539 81 HOH HOH . L 6 HOH A 40 540 82 HOH HOH . L 6 HOH A 41 541 85 HOH HOH . L 6 HOH A 42 542 86 HOH HOH . L 6 HOH A 43 543 87 HOH HOH . L 6 HOH A 44 544 94 HOH HOH . L 6 HOH A 45 545 96 HOH HOH . L 6 HOH A 46 546 97 HOH HOH . L 6 HOH A 47 547 101 HOH HOH . L 6 HOH A 48 548 103 HOH HOH . L 6 HOH A 49 549 104 HOH HOH . L 6 HOH A 50 550 105 HOH HOH . L 6 HOH A 51 551 109 HOH HOH . L 6 HOH A 52 552 111 HOH HOH . L 6 HOH A 53 553 113 HOH HOH . L 6 HOH A 54 554 115 HOH HOH . L 6 HOH A 55 555 121 HOH HOH . L 6 HOH A 56 556 122 HOH HOH . L 6 HOH A 57 557 123 HOH HOH . L 6 HOH A 58 558 125 HOH HOH . L 6 HOH A 59 559 128 HOH HOH . L 6 HOH A 60 560 133 HOH HOH . L 6 HOH A 61 561 135 HOH HOH . L 6 HOH A 62 562 136 HOH HOH . L 6 HOH A 63 563 138 HOH HOH . L 6 HOH A 64 564 140 HOH HOH . L 6 HOH A 65 565 141 HOH HOH . L 6 HOH A 66 566 142 HOH HOH . L 6 HOH A 67 567 143 HOH HOH . L 6 HOH A 68 568 144 HOH HOH . L 6 HOH A 69 569 146 HOH HOH . L 6 HOH A 70 570 147 HOH HOH . L 6 HOH A 71 571 148 HOH HOH . L 6 HOH A 72 572 149 HOH HOH . L 6 HOH A 73 573 150 HOH HOH . L 6 HOH A 74 574 151 HOH HOH . L 6 HOH A 75 575 152 HOH HOH . L 6 HOH A 76 576 153 HOH HOH . L 6 HOH A 77 577 154 HOH HOH . L 6 HOH A 78 578 156 HOH HOH . L 6 HOH A 79 579 159 HOH HOH . L 6 HOH A 80 580 160 HOH HOH . L 6 HOH A 81 581 161 HOH HOH . L 6 HOH A 82 582 162 HOH HOH . L 6 HOH A 83 583 163 HOH HOH . L 6 HOH A 84 584 168 HOH HOH . L 6 HOH A 85 585 172 HOH HOH . L 6 HOH A 86 586 175 HOH HOH . L 6 HOH A 87 587 177 HOH HOH . L 6 HOH A 88 588 38 HOH HOH . M 6 HOH B 1 501 4 HOH HOH . M 6 HOH B 2 502 9 HOH HOH . M 6 HOH B 3 503 13 HOH HOH . M 6 HOH B 4 504 14 HOH HOH . M 6 HOH B 5 505 15 HOH HOH . M 6 HOH B 6 506 17 HOH HOH . M 6 HOH B 7 507 19 HOH HOH . M 6 HOH B 8 508 21 HOH HOH . M 6 HOH B 9 509 22 HOH HOH . M 6 HOH B 10 510 23 HOH HOH . M 6 HOH B 11 511 24 HOH HOH . M 6 HOH B 12 512 25 HOH HOH . M 6 HOH B 13 513 26 HOH HOH . M 6 HOH B 14 514 27 HOH HOH . M 6 HOH B 15 515 30 HOH HOH . M 6 HOH B 16 516 31 HOH HOH . M 6 HOH B 17 517 32 HOH HOH . M 6 HOH B 18 518 33 HOH HOH . M 6 HOH B 19 519 34 HOH HOH . M 6 HOH B 20 520 35 HOH HOH . M 6 HOH B 21 521 36 HOH HOH . M 6 HOH B 22 522 39 HOH HOH . M 6 HOH B 23 523 43 HOH HOH . M 6 HOH B 24 524 45 HOH HOH . M 6 HOH B 25 525 46 HOH HOH . M 6 HOH B 26 526 47 HOH HOH . M 6 HOH B 27 527 48 HOH HOH . M 6 HOH B 28 528 51 HOH HOH . M 6 HOH B 29 529 54 HOH HOH . M 6 HOH B 30 530 55 HOH HOH . M 6 HOH B 31 531 56 HOH HOH . M 6 HOH B 32 532 57 HOH HOH . M 6 HOH B 33 533 62 HOH HOH . M 6 HOH B 34 534 65 HOH HOH . M 6 HOH B 35 535 66 HOH HOH . M 6 HOH B 36 536 69 HOH HOH . M 6 HOH B 37 537 70 HOH HOH . M 6 HOH B 38 538 72 HOH HOH . M 6 HOH B 39 539 73 HOH HOH . M 6 HOH B 40 540 80 HOH HOH . M 6 HOH B 41 541 83 HOH HOH . M 6 HOH B 42 542 84 HOH HOH . M 6 HOH B 43 543 88 HOH HOH . M 6 HOH B 44 544 89 HOH HOH . M 6 HOH B 45 545 90 HOH HOH . M 6 HOH B 46 546 91 HOH HOH . M 6 HOH B 47 547 92 HOH HOH . M 6 HOH B 48 548 93 HOH HOH . M 6 HOH B 49 549 95 HOH HOH . M 6 HOH B 50 550 98 HOH HOH . M 6 HOH B 51 551 99 HOH HOH . M 6 HOH B 52 552 100 HOH HOH . M 6 HOH B 53 553 102 HOH HOH . M 6 HOH B 54 554 106 HOH HOH . M 6 HOH B 55 555 107 HOH HOH . M 6 HOH B 56 556 108 HOH HOH . M 6 HOH B 57 557 110 HOH HOH . M 6 HOH B 58 558 112 HOH HOH . M 6 HOH B 59 559 114 HOH HOH . M 6 HOH B 60 560 116 HOH HOH . M 6 HOH B 61 561 117 HOH HOH . M 6 HOH B 62 562 118 HOH HOH . M 6 HOH B 63 563 119 HOH HOH . M 6 HOH B 64 564 120 HOH HOH . M 6 HOH B 65 565 124 HOH HOH . M 6 HOH B 66 566 126 HOH HOH . M 6 HOH B 67 567 127 HOH HOH . M 6 HOH B 68 568 129 HOH HOH . M 6 HOH B 69 569 130 HOH HOH . M 6 HOH B 70 570 131 HOH HOH . M 6 HOH B 71 571 132 HOH HOH . M 6 HOH B 72 572 134 HOH HOH . M 6 HOH B 73 573 139 HOH HOH . M 6 HOH B 74 574 145 HOH HOH . M 6 HOH B 75 575 155 HOH HOH . M 6 HOH B 76 576 157 HOH HOH . M 6 HOH B 77 577 158 HOH HOH . M 6 HOH B 78 578 164 HOH HOH . M 6 HOH B 79 579 165 HOH HOH . M 6 HOH B 80 580 166 HOH HOH . M 6 HOH B 81 581 167 HOH HOH . M 6 HOH B 82 582 169 HOH HOH . M 6 HOH B 83 583 170 HOH HOH . M 6 HOH B 84 584 171 HOH HOH . M 6 HOH B 85 585 173 HOH HOH . M 6 HOH B 86 586 174 HOH HOH . M 6 HOH B 87 587 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 LMS . . . F 2 -42.422 12.236 -22.581 1 50.98 ? N9 LMS 401 B 1 HETATM 2 C C8 LMS . . . F 2 -41.985 13.093 -23.549 1 51.93 ? C8 LMS 401 B 1 HETATM 3 N N7 LMS . . . F 2 -42.72 12.99 -24.693 1 46.67 ? N7 LMS 401 B 1 HETATM 4 C C5 LMS . . . F 2 -43.666 12.086 -24.431 1 51.61 ? C5 LMS 401 B 1 HETATM 5 C C6 LMS . . . F 2 -44.775 11.509 -25.203 1 55.48 ? C6 LMS 401 B 1 HETATM 6 N N6 LMS . . . F 2 -44.997 11.926 -26.463 1 55.4 ? N6 LMS 401 B 1 HETATM 7 N N1 LMS . . . F 2 -45.51 10.538 -24.616 1 61.35 ? N1 LMS 401 B 1 HETATM 8 C C2 LMS . . . F 2 -45.258 10.118 -23.343 1 59.02 ? C2 LMS 401 B 1 HETATM 9 N N3 LMS . . . F 2 -44.258 10.612 -22.587 1 49.32 ? N3 LMS 401 B 1 HETATM 10 C C4 LMS . . . F 2 -43.454 11.575 -23.063 1 49.4 ? C4 LMS 401 B 1 HETATM 11 N N LMS . . . F 2 -40.15 6.347 -19.471 1 40.07 ? N LMS 401 B 1 HETATM 12 S S LMS . . . F 2 -39.666 7.038 -20.799 1 43.44 ? S LMS 401 B 1 HETATM 13 O O1P LMS . . . F 2 -38.317 6.712 -21.005 1 46.63 ? O1P LMS 401 B 1 HETATM 14 O O2P LMS . . . F 2 -40.613 6.547 -21.782 1 49.51 ? O2P LMS 401 B 1 HETATM 15 O O5' LMS . . . F 2 -39.562 8.525 -20.785 1 48.23 ? O5' LMS 401 B 1 HETATM 16 C C5' LMS . . . F 2 -40.827 9.151 -20.629 1 57.61 ? C5' LMS 401 B 1 HETATM 17 C C4' LMS . . . F 2 -40.608 10.544 -20.086 1 59.12 ? C4' LMS 401 B 1 HETATM 18 O O4' LMS . . . F 2 -40.625 11.376 -21.228 1 55.42 ? O4' LMS 401 B 1 HETATM 19 C C3' LMS . . . F 2 -41.726 10.991 -19.149 1 66.2 ? C3' LMS 401 B 1 HETATM 20 O O3' LMS . . . F 2 -41.166 11.906 -18.184 1 70.64 ? O3' LMS 401 B 1 HETATM 21 C C2' LMS . . . F 2 -42.715 11.643 -20.092 1 61.48 ? C2' LMS 401 B 1 HETATM 22 O O2' LMS . . . F 2 -43.408 12.711 -19.445 1 63.68 ? O2' LMS 401 B 1 HETATM 23 C C1' LMS . . . F 2 -41.814 12.15 -21.225 1 55.71 ? C1' LMS 401 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 474 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #