data_4INQ # _model_server_result.job_id FqWFY6RG1HD25FM9e8_Kxw _model_server_result.datetime_utc '2025-03-25 14:59:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4inq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 4INQ # _exptl.entry_id 4INQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 666.587 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4INQ _cell.length_a 39.889 _cell.length_b 88.992 _cell.length_c 95.665 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4INQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H48 O16 P2' _chem_comp.formula_weight 666.587 _chem_comp.id PIF _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'L-ALPHA-D-MYOPHOSPHATIDYLINOSITOL 4-PHOSPHATE;D(+)SN1,2DI-O-OCTANOYLGLYCERYL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 PIF sing 260 n n C2 C1 PIF sing 261 n n C1 O1 PIF sing 262 n n C1 H1 PIF sing 263 n n O1 P1 PIF sing 264 n n O13 P1 PIF sing 265 n n P1 O11 PIF doub 266 n n P1 O12 PIF sing 267 n n O2 C2 PIF sing 268 n n C3 C2 PIF sing 269 n n C2 H2 PIF sing 270 n n O2 HO2 PIF sing 271 n n C4 C3 PIF sing 272 n n O3 C3 PIF sing 273 n n C3 H3 PIF sing 274 n n O3 HO3 PIF sing 275 n n O4 C4 PIF sing 276 n n C4 C5 PIF sing 277 n n C4 H4 PIF sing 278 n n P4 O4 PIF sing 279 n n O43 P4 PIF doub 280 n n P4 O41 PIF sing 281 n n P4 O42 PIF sing 282 n n O5 C5 PIF sing 283 n n C5 C6 PIF sing 284 n n C5 H5 PIF sing 285 n n O5 HO5 PIF sing 286 n n C6 O6 PIF sing 287 n n C6 H6 PIF sing 288 n n O6 HO6 PIF sing 289 n n O13 C7 PIF sing 290 n n C8 C7 PIF sing 291 n n C7 H7 PIF sing 292 n n C7 H7A PIF sing 293 n n O14 C8 PIF sing 294 n n C8 C9 PIF sing 295 n n C8 H8 PIF sing 296 n n C9 O15 PIF sing 297 n n C9 H9 PIF sing 298 n n C9 H9A PIF sing 299 n n O16 C10 PIF doub 300 n n O15 C10 PIF sing 301 n n C10 C11 PIF sing 302 n n C11 C12 PIF sing 303 n n C11 H11 PIF sing 304 n n C11 H11A PIF sing 305 n n C12 C13 PIF sing 306 n n C12 H12 PIF sing 307 n n C12 H12A PIF sing 308 n n O12 HO12 PIF sing 309 n n C14 C13 PIF sing 310 n n C13 H13 PIF sing 311 n n C13 H13A PIF sing 312 n n C14 C15 PIF sing 313 n n C14 H14 PIF sing 314 n n C14 H14A PIF sing 315 n n C18 O14 PIF sing 316 n n C16 C15 PIF sing 317 n n C15 H15 PIF sing 318 n n C15 H15A PIF sing 319 n n C16 C17 PIF sing 320 n n C16 H16 PIF sing 321 n n C16 H16A PIF sing 322 n n C17 H17 PIF sing 323 n n C17 H17A PIF sing 324 n n C17 H17B PIF sing 325 n n C18 O17 PIF doub 326 n n C19 C18 PIF sing 327 n n C19 C20 PIF sing 328 n n C19 H19 PIF sing 329 n n C19 H19A PIF sing 330 n n C20 C21 PIF sing 331 n n C20 H20 PIF sing 332 n n C20 H20A PIF sing 333 n n C22 C21 PIF sing 334 n n C21 H21 PIF sing 335 n n C21 H21A PIF sing 336 n n C22 C23 PIF sing 337 n n C22 H22 PIF sing 338 n n C22 H22A PIF sing 339 n n C24 C23 PIF sing 340 n n C23 H23 PIF sing 341 n n C23 H23A PIF sing 342 n n C24 C25 PIF sing 343 n n C24 H24 PIF sing 344 n n C24 H24A PIF sing 345 n n C25 H25 PIF sing 346 n n C25 H25A PIF sing 347 n n C25 H25B PIF sing 348 n n O41 HO41 PIF sing 349 n n O42 HO42 PIF sing 350 n n # _atom_sites.entry_id 4INQ _atom_sites.fract_transf_matrix[1][1] 0.02507 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PIF A 1 1001 1 PIF PIP . C 3 HOH A 1 1101 1 HOH TIP . C 3 HOH A 2 1102 2 HOH TIP . C 3 HOH A 3 1103 3 HOH TIP . C 3 HOH A 4 1104 4 HOH TIP . C 3 HOH A 5 1105 5 HOH TIP . C 3 HOH A 6 1106 6 HOH TIP . C 3 HOH A 7 1107 7 HOH TIP . C 3 HOH A 8 1108 8 HOH TIP . C 3 HOH A 9 1109 9 HOH TIP . C 3 HOH A 10 1110 10 HOH TIP . C 3 HOH A 11 1111 11 HOH TIP . C 3 HOH A 12 1112 12 HOH TIP . C 3 HOH A 13 1113 13 HOH TIP . C 3 HOH A 14 1114 14 HOH TIP . C 3 HOH A 15 1115 15 HOH TIP . C 3 HOH A 16 1116 16 HOH TIP . C 3 HOH A 17 1117 17 HOH TIP . C 3 HOH A 18 1118 18 HOH TIP . C 3 HOH A 19 1119 19 HOH TIP . C 3 HOH A 20 1120 20 HOH TIP . C 3 HOH A 21 1121 21 HOH TIP . C 3 HOH A 22 1122 22 HOH TIP . C 3 HOH A 23 1123 23 HOH TIP . C 3 HOH A 24 1124 24 HOH TIP . C 3 HOH A 25 1125 25 HOH TIP . C 3 HOH A 26 1126 26 HOH TIP . C 3 HOH A 27 1127 27 HOH TIP . C 3 HOH A 28 1128 28 HOH TIP . C 3 HOH A 29 1129 29 HOH TIP . C 3 HOH A 30 1130 30 HOH TIP . C 3 HOH A 31 1131 31 HOH TIP . C 3 HOH A 32 1132 32 HOH TIP . C 3 HOH A 33 1133 33 HOH TIP . C 3 HOH A 34 1134 34 HOH TIP . C 3 HOH A 35 1135 35 HOH TIP . C 3 HOH A 36 1136 36 HOH TIP . C 3 HOH A 37 1137 37 HOH TIP . C 3 HOH A 38 1138 38 HOH TIP . C 3 HOH A 39 1139 39 HOH TIP . C 3 HOH A 40 1140 40 HOH TIP . C 3 HOH A 41 1141 41 HOH TIP . C 3 HOH A 42 1142 42 HOH TIP . C 3 HOH A 43 1143 43 HOH TIP . C 3 HOH A 44 1144 44 HOH TIP . C 3 HOH A 45 1145 45 HOH TIP . C 3 HOH A 46 1146 46 HOH TIP . C 3 HOH A 47 1147 47 HOH TIP . C 3 HOH A 48 1148 48 HOH TIP . C 3 HOH A 49 1149 49 HOH TIP . C 3 HOH A 50 1150 50 HOH TIP . C 3 HOH A 51 1151 51 HOH TIP . C 3 HOH A 52 1152 52 HOH TIP . C 3 HOH A 53 1153 53 HOH TIP . C 3 HOH A 54 1154 54 HOH TIP . C 3 HOH A 55 1155 55 HOH TIP . C 3 HOH A 56 1156 56 HOH TIP . C 3 HOH A 57 1157 57 HOH TIP . C 3 HOH A 58 1158 58 HOH TIP . C 3 HOH A 59 1159 59 HOH TIP . C 3 HOH A 60 1160 60 HOH TIP . C 3 HOH A 61 1161 61 HOH TIP . C 3 HOH A 62 1162 62 HOH TIP . C 3 HOH A 63 1163 63 HOH TIP . C 3 HOH A 64 1164 64 HOH TIP . C 3 HOH A 65 1165 65 HOH TIP . C 3 HOH A 66 1166 66 HOH TIP . C 3 HOH A 67 1167 67 HOH TIP . C 3 HOH A 68 1168 68 HOH TIP . C 3 HOH A 69 1169 69 HOH TIP . C 3 HOH A 70 1170 70 HOH TIP . C 3 HOH A 71 1171 71 HOH TIP . C 3 HOH A 72 1172 72 HOH TIP . C 3 HOH A 73 1173 73 HOH TIP . C 3 HOH A 74 1174 74 HOH TIP . C 3 HOH A 75 1175 75 HOH TIP . C 3 HOH A 76 1176 76 HOH TIP . C 3 HOH A 77 1177 77 HOH TIP . C 3 HOH A 78 1178 78 HOH TIP . C 3 HOH A 79 1179 79 HOH TIP . C 3 HOH A 80 1180 80 HOH TIP . C 3 HOH A 81 1181 81 HOH TIP . C 3 HOH A 82 1182 82 HOH TIP . C 3 HOH A 83 1183 83 HOH TIP . C 3 HOH A 84 1184 84 HOH TIP . C 3 HOH A 85 1185 85 HOH TIP . C 3 HOH A 86 1186 86 HOH TIP . C 3 HOH A 87 1187 87 HOH TIP . C 3 HOH A 88 1188 88 HOH TIP . C 3 HOH A 89 1189 89 HOH TIP . C 3 HOH A 90 1190 90 HOH TIP . C 3 HOH A 91 1191 91 HOH TIP . C 3 HOH A 92 1192 92 HOH TIP . C 3 HOH A 93 1193 93 HOH TIP . C 3 HOH A 94 1194 94 HOH TIP . C 3 HOH A 95 1195 95 HOH TIP . C 3 HOH A 96 1196 96 HOH TIP . C 3 HOH A 97 1197 97 HOH TIP . C 3 HOH A 98 1198 98 HOH TIP . C 3 HOH A 99 1199 99 HOH TIP . C 3 HOH A 100 1200 100 HOH TIP . C 3 HOH A 101 1201 101 HOH TIP . C 3 HOH A 102 1202 102 HOH TIP . C 3 HOH A 103 1203 103 HOH TIP . C 3 HOH A 104 1204 104 HOH TIP . C 3 HOH A 105 1205 105 HOH TIP . C 3 HOH A 106 1206 106 HOH TIP . C 3 HOH A 107 1207 107 HOH TIP . C 3 HOH A 108 1208 108 HOH TIP . C 3 HOH A 109 1209 109 HOH TIP . C 3 HOH A 110 1210 110 HOH TIP . C 3 HOH A 111 1211 111 HOH TIP . C 3 HOH A 112 1212 112 HOH TIP . C 3 HOH A 113 1213 113 HOH TIP . C 3 HOH A 114 1214 114 HOH TIP . C 3 HOH A 115 1215 115 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PIF . . . B 2 -8.366 14.987 -5.617 1 42.49 ? C1 PIF 1001 A 1 HETATM 2 O O1 PIF . . . B 2 -8.49 13.565 -5.667 1 46 ? O1 PIF 1001 A 1 HETATM 3 P P1 PIF . . . B 2 -8.199 12.646 -6.965 1 45.66 ? P1 PIF 1001 A 1 HETATM 4 C C2 PIF . . . B 2 -6.894 15.439 -5.922 1 42.34 ? C2 PIF 1001 A 1 HETATM 5 O O2 PIF . . . B 2 -6.002 14.863 -4.944 1 40.93 ? O2 PIF 1001 A 1 HETATM 6 C C3 PIF . . . B 2 -6.829 17.005 -5.858 1 41.82 ? C3 PIF 1001 A 1 HETATM 7 O O3 PIF . . . B 2 -5.501 17.465 -6.129 1 42.86 ? O3 PIF 1001 A 1 HETATM 8 C C4 PIF . . . B 2 -7.274 17.518 -4.464 1 39.71 ? C4 PIF 1001 A 1 HETATM 9 O O4 PIF . . . B 2 -7.26 18.943 -4.426 1 38.69 ? O4 PIF 1001 A 1 HETATM 10 P P4 PIF . . . B 2 -6.021 19.864 -4.012 1 38.77 ? P4 PIF 1001 A 1 HETATM 11 C C5 PIF . . . B 2 -8.692 17.038 -4.149 1 39.98 ? C5 PIF 1001 A 1 HETATM 12 O O5 PIF . . . B 2 -9.073 17.508 -2.867 1 40.59 ? O5 PIF 1001 A 1 HETATM 13 C C6 PIF . . . B 2 -8.785 15.5 -4.201 1 41.2 ? C6 PIF 1001 A 1 HETATM 14 O O6 PIF . . . B 2 -10.112 15.115 -3.889 1 39.51 ? O6 PIF 1001 A 1 HETATM 15 C C7 PIF . . . B 2 -5.709 11.56 -7.362 1 49.83 ? C7 PIF 1001 A 1 HETATM 16 C C8 PIF . . . B 2 -4.721 10.573 -6.648 1 52.18 ? C8 PIF 1001 A 1 HETATM 17 C C9 PIF . . . B 2 -5.4 9.299 -6.116 1 54.32 ? C9 PIF 1001 A 1 HETATM 18 C C10 PIF . . . B 2 -4.842 7.816 -4.336 1 57.16 ? C10 PIF 1001 A 1 HETATM 19 C C11 PIF . . . B 2 -5.228 6.321 -4.429 1 56.07 ? C11 PIF 1001 A 1 HETATM 20 O O11 PIF . . . B 2 -8.155 13.369 -8.249 1 47.09 ? O11 PIF 1001 A 1 HETATM 21 C C12 PIF . . . B 2 -5.677 5.752 -3.08 1 55.52 ? C12 PIF 1001 A 1 HETATM 22 O O12 PIF . . . B 2 -9.353 11.523 -6.955 1 46.2 ? O12 PIF 1001 A 1 HETATM 23 C C13 PIF . . . B 2 -5.933 4.242 -3.165 1 54.62 ? C13 PIF 1001 A 1 HETATM 24 O O13 PIF . . . B 2 -6.897 11.743 -6.596 1 48.41 ? O13 PIF 1001 A 1 HETATM 25 C C14 PIF . . . B 2 -6.213 3.642 -1.778 1 53.9 ? C14 PIF 1001 A 1 HETATM 26 O O14 PIF . . . B 2 -3.619 10.297 -7.618 1 53.04 ? O14 PIF 1001 A 1 HETATM 27 C C15 PIF . . . B 2 -5.98 2.126 -1.76 1 55.11 ? C15 PIF 1001 A 1 HETATM 28 O O15 PIF . . . B 2 -4.408 8.473 -5.475 1 57.1 ? O15 PIF 1001 A 1 HETATM 29 C C16 PIF . . . B 2 -5.475 1.622 -0.396 1 56.49 ? C16 PIF 1001 A 1 HETATM 30 O O16 PIF . . . B 2 -4.917 8.411 -3.251 1 58.31 ? O16 PIF 1001 A 1 HETATM 31 C C17 PIF . . . B 2 -4.182 0.79 -0.522 1 56.63 ? C17 PIF 1001 A 1 HETATM 32 O O17 PIF . . . B 2 -1.833 10.528 -6.216 1 53.71 ? O17 PIF 1001 A 1 HETATM 33 C C18 PIF . . . B 2 -2.323 10.005 -7.214 1 54.2 ? C18 PIF 1001 A 1 HETATM 34 C C19 PIF . . . B 2 -1.472 9.012 -7.994 1 55.01 ? C19 PIF 1001 A 1 HETATM 35 C C20 PIF . . . B 2 -1.529 7.625 -7.355 1 55.97 ? C20 PIF 1001 A 1 HETATM 36 C C21 PIF . . . B 2 -2.191 6.6 -8.292 1 57.01 ? C21 PIF 1001 A 1 HETATM 37 C C22 PIF . . . B 2 -2.534 5.406 -7.648 1 56.63 ? C22 PIF 1001 A 1 HETATM 38 C C23 PIF . . . B 2 -3.771 4.75 -7.769 1 56.64 ? C23 PIF 1001 A 1 HETATM 39 C C24 PIF . . . B 2 -4.148 3.579 -7.085 1 56.77 ? C24 PIF 1001 A 1 HETATM 40 C C25 PIF . . . B 2 -5.377 3.12 -7.581 1 56.47 ? C25 PIF 1001 A 1 HETATM 41 O O41 PIF . . . B 2 -6.564 21.026 -3.069 1 38.75 ? O41 PIF 1001 A 1 HETATM 42 O O42 PIF . . . B 2 -5.357 20.367 -5.256 1 39.31 ? O42 PIF 1001 A 1 HETATM 43 O O43 PIF . . . B 2 -5.037 18.972 -3.066 1 37.53 ? O43 PIF 1001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #