data_4IO0 # _model_server_result.job_id QzYa2nNVZc2b6kcusDGC4A _model_server_result.datetime_utc '2024-10-19 20:10:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4io0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4IO0 # _exptl.entry_id 4IO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 218.248 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-3-(naphthalen-1-yloxy)propane-1,2-diol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IO0 _cell.length_a 109.64 _cell.length_b 109.64 _cell.length_c 117.496 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C13 H14 O3' _chem_comp.formula_weight 218.248 _chem_comp.id RN1 _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-3-(naphthalen-1-yloxy)propane-1,2-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 RN1 doub 277 n y C02 C03 RN1 sing 278 n y C01 C06 RN1 sing 279 n y C03 C04 RN1 doub 280 n y C06 C05 RN1 doub 281 n y C04 C05 RN1 sing 282 n y C04 C07 RN1 sing 283 n y C05 C10 RN1 sing 284 n y C07 C08 RN1 doub 285 n y C10 O11 RN1 sing 286 n n C10 C09 RN1 doub 287 n y C08 C09 RN1 sing 288 n y O11 C12 RN1 sing 289 n n C14 O16 RN1 sing 290 n n C14 C13 RN1 sing 291 n n C12 C13 RN1 sing 292 n n O15 C13 RN1 sing 293 n n C01 H1 RN1 sing 294 n n C02 H2 RN1 sing 295 n n C03 H3 RN1 sing 296 n n C06 H4 RN1 sing 297 n n C07 H5 RN1 sing 298 n n C08 H6 RN1 sing 299 n n C09 H7 RN1 sing 300 n n C12 H8 RN1 sing 301 n n C12 H9 RN1 sing 302 n n C13 H10 RN1 sing 303 n n C14 H11 RN1 sing 304 n n C14 H12 RN1 sing 305 n n O15 H13 RN1 sing 306 n n O16 H14 RN1 sing 307 n n # _atom_sites.entry_id 4IO0 _atom_sites.fract_transf_matrix[1][1] 0.009121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 301 1 SO4 SO4 . D 3 RN1 A 1 302 1 RN1 RN1 . E 2 SO4 B 1 301 2 SO4 SO4 . F 3 RN1 B 1 302 1 RN1 RN1 . G 4 HOH A 1 401 2 HOH HOH . G 4 HOH A 2 402 7 HOH HOH . G 4 HOH A 3 403 11 HOH HOH . G 4 HOH A 4 404 12 HOH HOH . G 4 HOH A 5 405 18 HOH HOH . G 4 HOH A 6 406 19 HOH HOH . G 4 HOH A 7 407 23 HOH HOH . G 4 HOH A 8 408 25 HOH HOH . G 4 HOH A 9 409 27 HOH HOH . G 4 HOH A 10 410 30 HOH HOH . G 4 HOH A 11 411 33 HOH HOH . G 4 HOH A 12 412 36 HOH HOH . G 4 HOH A 13 413 37 HOH HOH . G 4 HOH A 14 414 41 HOH HOH . G 4 HOH A 15 415 43 HOH HOH . G 4 HOH A 16 416 44 HOH HOH . G 4 HOH A 17 417 45 HOH HOH . G 4 HOH A 18 418 46 HOH HOH . G 4 HOH A 19 419 47 HOH HOH . G 4 HOH A 20 420 49 HOH HOH . G 4 HOH A 21 421 56 HOH HOH . G 4 HOH A 22 422 63 HOH HOH . G 4 HOH A 23 423 72 HOH HOH . G 4 HOH A 24 424 74 HOH HOH . G 4 HOH A 25 425 80 HOH HOH . G 4 HOH A 26 426 84 HOH HOH . G 4 HOH A 27 427 85 HOH HOH . G 4 HOH A 28 428 87 HOH HOH . G 4 HOH A 29 429 88 HOH HOH . G 4 HOH A 30 430 90 HOH HOH . G 4 HOH A 31 431 92 HOH HOH . G 4 HOH A 32 432 95 HOH HOH . G 4 HOH A 33 433 96 HOH HOH . G 4 HOH A 34 434 97 HOH HOH . G 4 HOH A 35 435 98 HOH HOH . G 4 HOH A 36 436 99 HOH HOH . G 4 HOH A 37 437 100 HOH HOH . G 4 HOH A 38 438 101 HOH HOH . G 4 HOH A 39 439 105 HOH HOH . G 4 HOH A 40 440 106 HOH HOH . G 4 HOH A 41 441 109 HOH HOH . G 4 HOH A 42 442 111 HOH HOH . G 4 HOH A 43 443 115 HOH HOH . G 4 HOH A 44 444 116 HOH HOH . G 4 HOH A 45 445 119 HOH HOH . G 4 HOH A 46 446 120 HOH HOH . G 4 HOH A 47 447 122 HOH HOH . G 4 HOH A 48 448 123 HOH HOH . G 4 HOH A 49 449 124 HOH HOH . G 4 HOH A 50 450 146 HOH HOH . G 4 HOH A 51 451 155 HOH HOH . G 4 HOH A 52 452 160 HOH HOH . G 4 HOH A 53 453 161 HOH HOH . H 4 HOH B 1 401 3 HOH HOH . H 4 HOH B 2 402 5 HOH HOH . H 4 HOH B 3 403 6 HOH HOH . H 4 HOH B 4 404 8 HOH HOH . H 4 HOH B 5 405 9 HOH HOH . H 4 HOH B 6 406 13 HOH HOH . H 4 HOH B 7 407 15 HOH HOH . H 4 HOH B 8 408 16 HOH HOH . H 4 HOH B 9 409 22 HOH HOH . H 4 HOH B 10 410 26 HOH HOH . H 4 HOH B 11 411 28 HOH HOH . H 4 HOH B 12 412 31 HOH HOH . H 4 HOH B 13 413 34 HOH HOH . H 4 HOH B 14 414 35 HOH HOH . H 4 HOH B 15 415 38 HOH HOH . H 4 HOH B 16 416 39 HOH HOH . H 4 HOH B 17 417 40 HOH HOH . H 4 HOH B 18 418 51 HOH HOH . H 4 HOH B 19 419 52 HOH HOH . H 4 HOH B 20 420 58 HOH HOH . H 4 HOH B 21 421 64 HOH HOH . H 4 HOH B 22 422 67 HOH HOH . H 4 HOH B 23 423 69 HOH HOH . H 4 HOH B 24 424 70 HOH HOH . H 4 HOH B 25 425 71 HOH HOH . H 4 HOH B 26 426 73 HOH HOH . H 4 HOH B 27 427 89 HOH HOH . H 4 HOH B 28 428 91 HOH HOH . H 4 HOH B 29 429 94 HOH HOH . H 4 HOH B 30 430 103 HOH HOH . H 4 HOH B 31 431 127 HOH HOH . H 4 HOH B 32 432 128 HOH HOH . H 4 HOH B 33 433 129 HOH HOH . H 4 HOH B 34 434 130 HOH HOH . H 4 HOH B 35 435 131 HOH HOH . H 4 HOH B 36 436 134 HOH HOH . H 4 HOH B 37 437 136 HOH HOH . H 4 HOH B 38 438 137 HOH HOH . H 4 HOH B 39 439 138 HOH HOH . H 4 HOH B 40 440 139 HOH HOH . H 4 HOH B 41 441 140 HOH HOH . H 4 HOH B 42 442 142 HOH HOH . H 4 HOH B 43 443 145 HOH HOH . H 4 HOH B 44 444 147 HOH HOH . H 4 HOH B 45 445 154 HOH HOH . H 4 HOH B 46 446 159 HOH HOH . H 4 HOH B 47 447 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 RN1 . . . D 3 30.676 -7.543 -22.438 1 49.9 ? C01 RN1 302 A 1 HETATM 2 C C02 RN1 . . . D 3 30.772 -7.038 -21.138 1 37.22 ? C02 RN1 302 A 1 HETATM 3 C C03 RN1 . . . D 3 29.633 -6.56 -20.49 1 28.78 ? C03 RN1 302 A 1 HETATM 4 C C04 RN1 . . . D 3 28.363 -6.587 -21.137 1 29.64 ? C04 RN1 302 A 1 HETATM 5 C C05 RN1 . . . D 3 28.26 -7.083 -22.406 1 36.52 ? C05 RN1 302 A 1 HETATM 6 C C06 RN1 . . . D 3 29.435 -7.562 -23.074 1 43.92 ? C06 RN1 302 A 1 HETATM 7 C C07 RN1 . . . D 3 27.202 -6.086 -20.458 1 29.26 ? C07 RN1 302 A 1 HETATM 8 C C08 RN1 . . . D 3 25.962 -6.116 -21.102 1 32.71 ? C08 RN1 302 A 1 HETATM 9 C C09 RN1 . . . D 3 25.854 -6.625 -22.406 1 34.72 ? C09 RN1 302 A 1 HETATM 10 C C10 RN1 . . . D 3 26.988 -7.106 -23.072 1 42 ? C10 RN1 302 A 1 HETATM 11 O O11 RN1 . . . D 3 26.921 -7.633 -24.357 1 52.34 ? O11 RN1 302 A 1 HETATM 12 C C12 RN1 . . . D 3 25.883 -7.457 -25.266 1 42.17 ? C12 RN1 302 A 1 HETATM 13 C C13 RN1 . . . D 3 26.322 -7.18 -26.67 1 43.47 ? C13 RN1 302 A 1 HETATM 14 C C14 RN1 . . . D 3 25.467 -6.153 -27.36 1 55.47 ? C14 RN1 302 A 1 HETATM 15 O O15 RN1 . . . D 3 27.617 -6.708 -26.6 1 47.35 ? O15 RN1 302 A 1 HETATM 16 O O16 RN1 . . . D 3 25.768 -5.738 -28.661 1 47.5 ? O16 RN1 302 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #