data_4IOL
#
_model_server_result.job_id            2UoGgmYiFiIDTlsw4jw8DA 
_model_server_result.datetime_utc      '2024-11-23 08:35:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4iol 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    4IOL 
#
_exptl.entry_id    4IOL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4IOL 
_cell.length_a            160.37 
_cell.length_b            160.37 
_cell.length_c            258.074 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4IOL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4IOL 
_atom_sites.fract_transf_matrix[1][1]    0.006236 
_atom_sites.fract_transf_matrix[1][2]    0.0036 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0072 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003875 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 601 601 SO4 SO4 . 
D 3 ADP A 1 602 700 ADP ADP . 
E 4 ZD9 A 1 603 700 ZD9 ZD9 . 
F 5 XPO A 1 604 700 XPO XPO . 
G 2 SO4 A 1 605 2 SO4 SO4 . 
H 2 SO4 B 1 601 602 SO4 SO4 . 
I 3 ADP B 1 602 700 ADP ADP . 
J 2 SO4 B 1 603 1 SO4 SO4 . 
K 6 HOH A 1 701 560 HOH HOH . 
K 6 HOH A 2 702 702 HOH HOH . 
K 6 HOH A 3 703 562 HOH HOH . 
K 6 HOH A 4 704 565 HOH HOH . 
K 6 HOH A 5 705 567 HOH HOH . 
K 6 HOH A 6 706 568 HOH HOH . 
K 6 HOH A 7 707 569 HOH HOH . 
K 6 HOH A 8 708 570 HOH HOH . 
K 6 HOH A 9 709 573 HOH HOH . 
K 6 HOH A 10 710 575 HOH HOH . 
K 6 HOH A 11 711 576 HOH HOH . 
K 6 HOH A 12 712 579 HOH HOH . 
K 6 HOH A 13 713 581 HOH HOH . 
K 6 HOH A 14 714 582 HOH HOH . 
K 6 HOH A 15 715 585 HOH HOH . 
K 6 HOH A 16 716 586 HOH HOH . 
K 6 HOH A 17 717 587 HOH HOH . 
K 6 HOH A 18 718 588 HOH HOH . 
K 6 HOH A 19 719 589 HOH HOH . 
K 6 HOH A 20 720 591 HOH HOH . 
K 6 HOH A 21 721 592 HOH HOH . 
K 6 HOH A 22 722 596 HOH HOH . 
K 6 HOH A 23 723 597 HOH HOH . 
K 6 HOH A 24 724 609 HOH HOH . 
K 6 HOH A 25 725 610 HOH HOH . 
K 6 HOH A 26 726 611 HOH HOH . 
K 6 HOH A 27 727 615 HOH HOH . 
K 6 HOH A 28 728 618 HOH HOH . 
K 6 HOH A 29 729 619 HOH HOH . 
K 6 HOH A 30 730 621 HOH HOH . 
K 6 HOH A 31 731 628 HOH HOH . 
K 6 HOH A 32 732 630 HOH HOH . 
K 6 HOH A 33 733 633 HOH HOH . 
K 6 HOH A 34 734 634 HOH HOH . 
K 6 HOH A 35 735 639 HOH HOH . 
K 6 HOH A 36 736 640 HOH HOH . 
K 6 HOH A 37 737 644 HOH HOH . 
K 6 HOH A 38 738 646 HOH HOH . 
K 6 HOH A 39 739 651 HOH HOH . 
K 6 HOH A 40 740 653 HOH HOH . 
K 6 HOH A 41 741 654 HOH HOH . 
K 6 HOH A 42 742 655 HOH HOH . 
K 6 HOH A 43 743 657 HOH HOH . 
K 6 HOH A 44 744 658 HOH HOH . 
K 6 HOH A 45 745 665 HOH HOH . 
K 6 HOH A 46 746 668 HOH HOH . 
K 6 HOH A 47 747 673 HOH HOH . 
K 6 HOH A 48 748 676 HOH HOH . 
K 6 HOH A 49 749 677 HOH HOH . 
K 6 HOH A 50 750 680 HOH HOH . 
K 6 HOH A 51 751 683 HOH HOH . 
K 6 HOH A 52 752 690 HOH HOH . 
K 6 HOH A 53 753 693 HOH HOH . 
K 6 HOH A 54 754 694 HOH HOH . 
K 6 HOH A 55 755 696 HOH HOH . 
K 6 HOH A 56 756 699 HOH HOH . 
K 6 HOH A 57 757 703 HOH HOH . 
K 6 HOH A 58 758 704 HOH HOH . 
K 6 HOH A 59 759 721 HOH HOH . 
K 6 HOH A 60 760 723 HOH HOH . 
K 6 HOH A 61 761 726 HOH HOH . 
K 6 HOH A 62 762 730 HOH HOH . 
K 6 HOH A 63 763 736 HOH HOH . 
K 6 HOH A 64 764 747 HOH HOH . 
K 6 HOH A 65 765 757 HOH HOH . 
K 6 HOH A 66 766 765 HOH HOH . 
K 6 HOH A 67 767 771 HOH HOH . 
K 6 HOH A 68 768 776 HOH HOH . 
K 6 HOH A 69 769 781 HOH HOH . 
K 6 HOH A 70 770 782 HOH HOH . 
K 6 HOH A 71 771 790 HOH HOH . 
K 6 HOH A 72 772 793 HOH HOH . 
K 6 HOH A 73 773 795 HOH HOH . 
K 6 HOH A 74 774 805 HOH HOH . 
K 6 HOH A 75 775 808 HOH HOH . 
K 6 HOH A 76 776 809 HOH HOH . 
K 6 HOH A 77 777 810 HOH HOH . 
K 6 HOH A 78 778 815 HOH HOH . 
K 6 HOH A 79 779 820 HOH HOH . 
K 6 HOH A 80 780 823 HOH HOH . 
K 6 HOH A 81 781 825 HOH HOH . 
K 6 HOH A 82 782 829 HOH HOH . 
K 6 HOH A 83 783 836 HOH HOH . 
K 6 HOH A 84 784 2 HOH HOH . 
K 6 HOH A 85 785 7 HOH HOH . 
K 6 HOH A 86 786 8 HOH HOH . 
K 6 HOH A 87 787 9 HOH HOH . 
K 6 HOH A 88 788 10 HOH HOH . 
K 6 HOH A 89 789 11 HOH HOH . 
K 6 HOH A 90 790 12 HOH HOH . 
K 6 HOH A 91 791 13 HOH HOH . 
K 6 HOH A 92 792 14 HOH HOH . 
K 6 HOH A 93 793 15 HOH HOH . 
K 6 HOH A 94 794 16 HOH HOH . 
K 6 HOH A 95 795 17 HOH HOH . 
K 6 HOH A 96 796 18 HOH HOH . 
K 6 HOH A 97 797 19 HOH HOH . 
K 6 HOH A 98 798 20 HOH HOH . 
K 6 HOH A 99 799 21 HOH HOH . 
K 6 HOH A 100 800 22 HOH HOH . 
K 6 HOH A 101 801 23 HOH HOH . 
K 6 HOH A 102 802 24 HOH HOH . 
K 6 HOH A 103 803 27 HOH HOH . 
K 6 HOH A 104 804 28 HOH HOH . 
K 6 HOH A 105 805 29 HOH HOH . 
K 6 HOH A 106 806 30 HOH HOH . 
K 6 HOH A 107 807 31 HOH HOH . 
K 6 HOH A 108 808 41 HOH HOH . 
K 6 HOH A 109 809 42 HOH HOH . 
K 6 HOH A 110 810 44 HOH HOH . 
K 6 HOH A 111 811 47 HOH HOH . 
K 6 HOH A 112 812 48 HOH HOH . 
K 6 HOH A 113 813 49 HOH HOH . 
K 6 HOH A 114 814 50 HOH HOH . 
K 6 HOH A 115 815 51 HOH HOH . 
K 6 HOH A 116 816 53 HOH HOH . 
K 6 HOH A 117 817 62 HOH HOH . 
K 6 HOH A 118 818 63 HOH HOH . 
L 6 HOH B 1 701 562 HOH HOH . 
L 6 HOH B 2 702 571 HOH HOH . 
L 6 HOH B 3 703 572 HOH HOH . 
L 6 HOH B 4 704 573 HOH HOH . 
L 6 HOH B 5 705 577 HOH HOH . 
L 6 HOH B 6 706 579 HOH HOH . 
L 6 HOH B 7 707 580 HOH HOH . 
L 6 HOH B 8 708 585 HOH HOH . 
L 6 HOH B 9 709 587 HOH HOH . 
L 6 HOH B 10 710 590 HOH HOH . 
L 6 HOH B 11 711 594 HOH HOH . 
L 6 HOH B 12 712 598 HOH HOH . 
L 6 HOH B 13 713 625 HOH HOH . 
L 6 HOH B 14 714 649 HOH HOH . 
L 6 HOH B 15 715 654 HOH HOH . 
L 6 HOH B 16 716 657 HOH HOH . 
L 6 HOH B 17 717 794 HOH HOH . 
L 6 HOH B 18 718 718 HOH HOH . 
L 6 HOH B 19 719 1 HOH HOH . 
L 6 HOH B 20 720 3 HOH HOH . 
L 6 HOH B 21 721 4 HOH HOH . 
L 6 HOH B 22 722 5 HOH HOH . 
L 6 HOH B 23 723 6 HOH HOH . 
L 6 HOH B 24 724 25 HOH HOH . 
L 6 HOH B 25 725 26 HOH HOH . 
L 6 HOH B 26 726 32 HOH HOH . 
L 6 HOH B 27 727 33 HOH HOH . 
L 6 HOH B 28 728 34 HOH HOH . 
L 6 HOH B 29 729 35 HOH HOH . 
L 6 HOH B 30 730 36 HOH HOH . 
L 6 HOH B 31 731 37 HOH HOH . 
L 6 HOH B 32 732 38 HOH HOH . 
L 6 HOH B 33 733 733 HOH HOH . 
L 6 HOH B 34 734 40 HOH HOH . 
L 6 HOH B 35 735 43 HOH HOH . 
L 6 HOH B 36 736 45 HOH HOH . 
L 6 HOH B 37 737 46 HOH HOH . 
L 6 HOH B 38 738 52 HOH HOH . 
L 6 HOH B 39 739 54 HOH HOH . 
L 6 HOH B 40 740 55 HOH HOH . 
L 6 HOH B 41 741 56 HOH HOH . 
L 6 HOH B 42 742 57 HOH HOH . 
L 6 HOH B 43 743 58 HOH HOH . 
L 6 HOH B 44 744 59 HOH HOH . 
L 6 HOH B 45 745 60 HOH HOH . 
L 6 HOH B 46 746 61 HOH HOH . 
L 6 HOH B 47 747 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . A . D 3 57.338 41.177 26.145 0.6 81.65 ? PB ADP 602 A 1 
HETATM 2 O O1B ADP . A . D 3 57.444 39.787 25.544 0.6 75.64 ? O1B ADP 602 A 1 
HETATM 3 O O2B ADP . A . D 3 56.849 41.209 27.574 0.6 73.79 ? O2B ADP 602 A 1 
HETATM 4 O O3B ADP . A . D 3 56.657 42.191 25.248 0.6 76.13 ? O3B ADP 602 A 1 
HETATM 5 P PA ADP . A . D 3 59.902 42.047 25.108 0.6 73.3 ? PA ADP 602 A 1 
HETATM 6 O O1A ADP . A . D 3 61.315 42.028 25.64 0.6 67.27 ? O1A ADP 602 A 1 
HETATM 7 O O2A ADP . A . D 3 59.608 41.272 23.845 0.6 72.27 ? O2A ADP 602 A 1 
HETATM 8 O O3A ADP . A . D 3 58.885 41.627 26.3 0.6 78.32 ? O3A ADP 602 A 1 
HETATM 9 O O5' ADP . A . D 3 59.42 43.571 24.912 0.6 73.39 ? O5' ADP 602 A 1 
HETATM 10 C C5' ADP . A . D 3 59.46 44.191 23.626 0.6 71.89 ? C5' ADP 602 A 1 
HETATM 11 C C4' ADP . A . D 3 60.801 44.901 23.466 0.6 67.47 ? C4' ADP 602 A 1 
HETATM 12 O O4' ADP . A . D 3 61.326 45.302 24.744 0.6 61.48 ? O4' ADP 602 A 1 
HETATM 13 C C3' ADP . A . D 3 61.852 43.999 22.822 0.6 67.03 ? C3' ADP 602 A 1 
HETATM 14 O O3' ADP . A . D 3 61.938 44.21 21.401 0.6 66.18 ? O3' ADP 602 A 1 
HETATM 15 C C2' ADP . A . D 3 63.145 44.313 23.573 0.6 64.42 ? C2' ADP 602 A 1 
HETATM 16 O O2' ADP . A . D 3 64.131 44.872 22.695 0.6 64.91 ? O2' ADP 602 A 1 
HETATM 17 C C1' ADP . A . D 3 62.747 45.333 24.638 0.6 61.11 ? C1' ADP 602 A 1 
HETATM 18 N N9 ADP . A . D 3 63.377 45.084 25.956 0.6 58.73 ? N9 ADP 602 A 1 
HETATM 19 C C8 ADP . A . D 3 63.101 44.069 26.795 0.6 57.88 ? C8 ADP 602 A 1 
HETATM 20 N N7 ADP . A . D 3 63.86 44.154 27.915 0.6 54.54 ? N7 ADP 602 A 1 
HETATM 21 C C5 ADP . A . D 3 64.644 45.252 27.811 0.6 54.15 ? C5 ADP 602 A 1 
HETATM 22 C C6 ADP . A . D 3 65.681 45.926 28.639 0.6 53.67 ? C6 ADP 602 A 1 
HETATM 23 N N6 ADP . A . D 3 66.049 45.442 29.861 0.6 48.49 ? N6 ADP 602 A 1 
HETATM 24 N N1 ADP . A . D 3 66.242 47.055 28.14 0.6 54.79 ? N1 ADP 602 A 1 
HETATM 25 C C2 ADP . A . D 3 65.892 47.559 26.943 0.6 56 ? C2 ADP 602 A 1 
HETATM 26 N N3 ADP . A . D 3 64.967 46.995 26.149 0.6 55 ? N3 ADP 602 A 1 
HETATM 27 C C4 ADP . A . D 3 64.317 45.863 26.516 0.6 55.9 ? C4 ADP 602 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#