data_4IOL # _model_server_result.job_id 2RSvr9G1RTgaU6gn-VL0sA _model_server_result.datetime_utc '2024-10-15 16:22:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4iol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 4IOL # _exptl.entry_id 4IOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.005 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'formyl phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IOL _cell.length_a 160.37 _cell.length_b 160.37 _cell.length_c 258.074 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C H3 O5 P' _chem_comp.formula_weight 126.005 _chem_comp.id XPO _chem_comp.mon_nstd_flag . _chem_comp.name 'formyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C XPO doub 424 n n C O2 XPO sing 425 n n O3 P XPO doub 426 n n O2 P XPO sing 427 n n P O1 XPO sing 428 n n P O4 XPO sing 429 n n C H1 XPO sing 430 n n O1 H2 XPO sing 431 n n O4 H3 XPO sing 432 n n # _atom_sites.entry_id 4IOL _atom_sites.fract_transf_matrix[1][1] 0.006236 _atom_sites.fract_transf_matrix[1][2] 0.0036 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 601 601 SO4 SO4 . D 3 ADP A 1 602 700 ADP ADP . E 4 ZD9 A 1 603 700 ZD9 ZD9 . F 5 XPO A 1 604 700 XPO XPO . G 2 SO4 A 1 605 2 SO4 SO4 . H 2 SO4 B 1 601 602 SO4 SO4 . I 3 ADP B 1 602 700 ADP ADP . J 2 SO4 B 1 603 1 SO4 SO4 . K 6 HOH A 1 701 560 HOH HOH . K 6 HOH A 2 702 702 HOH HOH . K 6 HOH A 3 703 562 HOH HOH . K 6 HOH A 4 704 565 HOH HOH . K 6 HOH A 5 705 567 HOH HOH . K 6 HOH A 6 706 568 HOH HOH . K 6 HOH A 7 707 569 HOH HOH . K 6 HOH A 8 708 570 HOH HOH . K 6 HOH A 9 709 573 HOH HOH . K 6 HOH A 10 710 575 HOH HOH . K 6 HOH A 11 711 576 HOH HOH . K 6 HOH A 12 712 579 HOH HOH . K 6 HOH A 13 713 581 HOH HOH . K 6 HOH A 14 714 582 HOH HOH . K 6 HOH A 15 715 585 HOH HOH . K 6 HOH A 16 716 586 HOH HOH . K 6 HOH A 17 717 587 HOH HOH . K 6 HOH A 18 718 588 HOH HOH . K 6 HOH A 19 719 589 HOH HOH . K 6 HOH A 20 720 591 HOH HOH . K 6 HOH A 21 721 592 HOH HOH . K 6 HOH A 22 722 596 HOH HOH . K 6 HOH A 23 723 597 HOH HOH . K 6 HOH A 24 724 609 HOH HOH . K 6 HOH A 25 725 610 HOH HOH . K 6 HOH A 26 726 611 HOH HOH . K 6 HOH A 27 727 615 HOH HOH . K 6 HOH A 28 728 618 HOH HOH . K 6 HOH A 29 729 619 HOH HOH . K 6 HOH A 30 730 621 HOH HOH . K 6 HOH A 31 731 628 HOH HOH . K 6 HOH A 32 732 630 HOH HOH . K 6 HOH A 33 733 633 HOH HOH . K 6 HOH A 34 734 634 HOH HOH . K 6 HOH A 35 735 639 HOH HOH . K 6 HOH A 36 736 640 HOH HOH . K 6 HOH A 37 737 644 HOH HOH . K 6 HOH A 38 738 646 HOH HOH . K 6 HOH A 39 739 651 HOH HOH . K 6 HOH A 40 740 653 HOH HOH . K 6 HOH A 41 741 654 HOH HOH . K 6 HOH A 42 742 655 HOH HOH . K 6 HOH A 43 743 657 HOH HOH . K 6 HOH A 44 744 658 HOH HOH . K 6 HOH A 45 745 665 HOH HOH . K 6 HOH A 46 746 668 HOH HOH . K 6 HOH A 47 747 673 HOH HOH . K 6 HOH A 48 748 676 HOH HOH . K 6 HOH A 49 749 677 HOH HOH . K 6 HOH A 50 750 680 HOH HOH . K 6 HOH A 51 751 683 HOH HOH . K 6 HOH A 52 752 690 HOH HOH . K 6 HOH A 53 753 693 HOH HOH . K 6 HOH A 54 754 694 HOH HOH . K 6 HOH A 55 755 696 HOH HOH . K 6 HOH A 56 756 699 HOH HOH . K 6 HOH A 57 757 703 HOH HOH . K 6 HOH A 58 758 704 HOH HOH . K 6 HOH A 59 759 721 HOH HOH . K 6 HOH A 60 760 723 HOH HOH . K 6 HOH A 61 761 726 HOH HOH . K 6 HOH A 62 762 730 HOH HOH . K 6 HOH A 63 763 736 HOH HOH . K 6 HOH A 64 764 747 HOH HOH . K 6 HOH A 65 765 757 HOH HOH . K 6 HOH A 66 766 765 HOH HOH . K 6 HOH A 67 767 771 HOH HOH . K 6 HOH A 68 768 776 HOH HOH . K 6 HOH A 69 769 781 HOH HOH . K 6 HOH A 70 770 782 HOH HOH . K 6 HOH A 71 771 790 HOH HOH . K 6 HOH A 72 772 793 HOH HOH . K 6 HOH A 73 773 795 HOH HOH . K 6 HOH A 74 774 805 HOH HOH . K 6 HOH A 75 775 808 HOH HOH . K 6 HOH A 76 776 809 HOH HOH . K 6 HOH A 77 777 810 HOH HOH . K 6 HOH A 78 778 815 HOH HOH . K 6 HOH A 79 779 820 HOH HOH . K 6 HOH A 80 780 823 HOH HOH . K 6 HOH A 81 781 825 HOH HOH . K 6 HOH A 82 782 829 HOH HOH . K 6 HOH A 83 783 836 HOH HOH . K 6 HOH A 84 784 2 HOH HOH . K 6 HOH A 85 785 7 HOH HOH . K 6 HOH A 86 786 8 HOH HOH . K 6 HOH A 87 787 9 HOH HOH . K 6 HOH A 88 788 10 HOH HOH . K 6 HOH A 89 789 11 HOH HOH . K 6 HOH A 90 790 12 HOH HOH . K 6 HOH A 91 791 13 HOH HOH . K 6 HOH A 92 792 14 HOH HOH . K 6 HOH A 93 793 15 HOH HOH . K 6 HOH A 94 794 16 HOH HOH . K 6 HOH A 95 795 17 HOH HOH . K 6 HOH A 96 796 18 HOH HOH . K 6 HOH A 97 797 19 HOH HOH . K 6 HOH A 98 798 20 HOH HOH . K 6 HOH A 99 799 21 HOH HOH . K 6 HOH A 100 800 22 HOH HOH . K 6 HOH A 101 801 23 HOH HOH . K 6 HOH A 102 802 24 HOH HOH . K 6 HOH A 103 803 27 HOH HOH . K 6 HOH A 104 804 28 HOH HOH . K 6 HOH A 105 805 29 HOH HOH . K 6 HOH A 106 806 30 HOH HOH . K 6 HOH A 107 807 31 HOH HOH . K 6 HOH A 108 808 41 HOH HOH . K 6 HOH A 109 809 42 HOH HOH . K 6 HOH A 110 810 44 HOH HOH . K 6 HOH A 111 811 47 HOH HOH . K 6 HOH A 112 812 48 HOH HOH . K 6 HOH A 113 813 49 HOH HOH . K 6 HOH A 114 814 50 HOH HOH . K 6 HOH A 115 815 51 HOH HOH . K 6 HOH A 116 816 53 HOH HOH . K 6 HOH A 117 817 62 HOH HOH . K 6 HOH A 118 818 63 HOH HOH . L 6 HOH B 1 701 562 HOH HOH . L 6 HOH B 2 702 571 HOH HOH . L 6 HOH B 3 703 572 HOH HOH . L 6 HOH B 4 704 573 HOH HOH . L 6 HOH B 5 705 577 HOH HOH . L 6 HOH B 6 706 579 HOH HOH . L 6 HOH B 7 707 580 HOH HOH . L 6 HOH B 8 708 585 HOH HOH . L 6 HOH B 9 709 587 HOH HOH . L 6 HOH B 10 710 590 HOH HOH . L 6 HOH B 11 711 594 HOH HOH . L 6 HOH B 12 712 598 HOH HOH . L 6 HOH B 13 713 625 HOH HOH . L 6 HOH B 14 714 649 HOH HOH . L 6 HOH B 15 715 654 HOH HOH . L 6 HOH B 16 716 657 HOH HOH . L 6 HOH B 17 717 794 HOH HOH . L 6 HOH B 18 718 718 HOH HOH . L 6 HOH B 19 719 1 HOH HOH . L 6 HOH B 20 720 3 HOH HOH . L 6 HOH B 21 721 4 HOH HOH . L 6 HOH B 22 722 5 HOH HOH . L 6 HOH B 23 723 6 HOH HOH . L 6 HOH B 24 724 25 HOH HOH . L 6 HOH B 25 725 26 HOH HOH . L 6 HOH B 26 726 32 HOH HOH . L 6 HOH B 27 727 33 HOH HOH . L 6 HOH B 28 728 34 HOH HOH . L 6 HOH B 29 729 35 HOH HOH . L 6 HOH B 30 730 36 HOH HOH . L 6 HOH B 31 731 37 HOH HOH . L 6 HOH B 32 732 38 HOH HOH . L 6 HOH B 33 733 733 HOH HOH . L 6 HOH B 34 734 40 HOH HOH . L 6 HOH B 35 735 43 HOH HOH . L 6 HOH B 36 736 45 HOH HOH . L 6 HOH B 37 737 46 HOH HOH . L 6 HOH B 38 738 52 HOH HOH . L 6 HOH B 39 739 54 HOH HOH . L 6 HOH B 40 740 55 HOH HOH . L 6 HOH B 41 741 56 HOH HOH . L 6 HOH B 42 742 57 HOH HOH . L 6 HOH B 43 743 58 HOH HOH . L 6 HOH B 44 744 59 HOH HOH . L 6 HOH B 45 745 60 HOH HOH . L 6 HOH B 46 746 61 HOH HOH . L 6 HOH B 47 747 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C XPO . C . F 5 60.111 41.07 25.099 0.4 62.52 ? C XPO 604 A 1 HETATM 2 O O XPO . C . F 5 60.785 40.867 24.104 0.4 57.13 ? O XPO 604 A 1 HETATM 3 P P XPO . C . F 5 57.492 40.23 24.838 0.4 66.67 ? P XPO 604 A 1 HETATM 4 O O1 XPO . C . F 5 56.894 38.741 24.663 0.4 59.7 ? O1 XPO 604 A 1 HETATM 5 O O2 XPO . C . F 5 59.084 40.13 25.462 0.4 64.85 ? O2 XPO 604 A 1 HETATM 6 O O3 XPO . C . F 5 57.495 40.998 23.411 0.4 60.73 ? O3 XPO 604 A 1 HETATM 7 O O4 XPO . C . F 5 56.582 41.074 25.881 0.4 68.69 ? O4 XPO 604 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #