data_4IPF # _model_server_result.job_id ZM3d_hBKUKygRNWl0g3RFA _model_server_result.datetime_utc '2024-10-12 19:27:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ipf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4IPF # _exptl.entry_id 4IPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 727.783 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(4S,5R)-2-(4-tert-butyl-2-ethoxyphenyl)-4,5-bis(4-chlorophenyl)-4,5-dimethyl-4,5-dihydro-1H-imidazol-1-yl]{4-[3-(methylsulfonyl)propyl]piperazin-1-yl}methanone' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IPF _cell.length_a 43.083 _cell.length_b 67.493 _cell.length_c 66.724 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C38 H48 Cl2 N4 O4 S' _chem_comp.formula_weight 727.783 _chem_comp.id 1F0 _chem_comp.mon_nstd_flag . _chem_comp.name '[(4S,5R)-2-(4-tert-butyl-2-ethoxyphenyl)-4,5-bis(4-chlorophenyl)-4,5-dimethyl-4,5-dihydro-1H-imidazol-1-yl]{4-[3-(methylsulfonyl)propyl]piperazin-1-yl}methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RO5045337;RG7112 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL5 C54 1F0 sing 1 n n C53 C54 1F0 doub 2 n y C53 C52 1F0 sing 3 n y C54 C55 1F0 sing 4 n y C52 C51 1F0 doub 5 n y CL4 C44 1F0 sing 6 n n C55 C56 1F0 doub 7 n y C44 C43 1F0 doub 8 n y C44 C45 1F0 sing 9 n y C51 C56 1F0 sing 10 n y C51 C5 1F0 sing 11 n n C43 C42 1F0 sing 12 n y C45 C46 1F0 doub 13 n y C57 C5 1F0 sing 14 n n O10 C10 1F0 doub 15 n n C42 C41 1F0 doub 16 n y C29 C28 1F0 sing 17 n n C5 C4 1F0 sing 18 n n C5 N1 1F0 sing 19 n n C46 C41 1F0 sing 20 n y C41 C4 1F0 sing 21 n n C10 N1 1F0 sing 22 n n C10 N10 1F0 sing 23 n n C4 C47 1F0 sing 24 n n C4 N3 1F0 sing 25 n n N1 C2 1F0 sing 26 n n C28 O27 1F0 sing 27 n n O27 C26 1F0 sing 28 n n C14 N10 1F0 sing 29 n n C14 C13 1F0 sing 30 n n N10 C11 1F0 sing 31 n n N3 C2 1F0 doub 32 n n C2 C21 1F0 sing 33 n n C26 C21 1F0 doub 34 n y C26 C25 1F0 sing 35 n y C13 N12 1F0 sing 36 n n C11 C12 1F0 sing 37 n n C21 C22 1F0 sing 38 n y C25 C24 1F0 doub 39 n y N12 C12 1F0 sing 40 n n N12 C15 1F0 sing 41 n n C22 C23 1F0 doub 42 n y C24 C23 1F0 sing 43 n y C24 C30 1F0 sing 44 n n C15 C16 1F0 sing 45 n n C31 C30 1F0 sing 46 n n C33 C30 1F0 sing 47 n n C30 C32 1F0 sing 48 n n C16 C17 1F0 sing 49 n n C17 S17 1F0 sing 50 n n S17 O18 1F0 doub 51 n n S17 O17 1F0 doub 52 n n S17 C19 1F0 sing 53 n n C57 H1 1F0 sing 54 n n C57 H2 1F0 sing 55 n n C57 H3 1F0 sing 56 n n C47 H4 1F0 sing 57 n n C47 H5 1F0 sing 58 n n C47 H6 1F0 sing 59 n n C56 H10 1F0 sing 60 n n C55 H11 1F0 sing 61 n n C53 H12 1F0 sing 62 n n C52 H13 1F0 sing 63 n n C42 H14 1F0 sing 64 n n C43 H15 1F0 sing 65 n n C45 H16 1F0 sing 66 n n C46 H17 1F0 sing 67 n n C14 H18 1F0 sing 68 n n C14 H19 1F0 sing 69 n n C13 H20 1F0 sing 70 n n C13 H21 1F0 sing 71 n n C12 H23 1F0 sing 72 n n C12 H24 1F0 sing 73 n n C11 H25 1F0 sing 74 n n C11 H26 1F0 sing 75 n n C22 H27 1F0 sing 76 n n C23 H28 1F0 sing 77 n n C33 H29 1F0 sing 78 n n C33 H30 1F0 sing 79 n n C33 H31 1F0 sing 80 n n C31 H32 1F0 sing 81 n n C31 H33 1F0 sing 82 n n C31 H34 1F0 sing 83 n n C25 H35 1F0 sing 84 n n C28 H36 1F0 sing 85 n n C28 H37 1F0 sing 86 n n C29 H38 1F0 sing 87 n n C29 H39 1F0 sing 88 n n C29 H40 1F0 sing 89 n n C32 H41 1F0 sing 90 n n C32 H42 1F0 sing 91 n n C32 H43 1F0 sing 92 n n C16 H44 1F0 sing 93 n n C16 H45 1F0 sing 94 n n C17 H46 1F0 sing 95 n n C17 H47 1F0 sing 96 n n C19 H48 1F0 sing 97 n n C19 H49 1F0 sing 98 n n C19 H50 1F0 sing 99 n n C15 H51 1F0 sing 100 n n C15 H52 1F0 sing 101 n n # _atom_sites.entry_id 4IPF _atom_sites.fract_transf_matrix[1][1] 0.023211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014987 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1F0 A 1 201 1 1F0 LIG . C 3 SO4 A 1 202 1 SO4 SO4 . D 3 SO4 A 1 203 2 SO4 SO4 . E 4 HOH A 1 301 1 HOH HOH . E 4 HOH A 2 302 2 HOH HOH . E 4 HOH A 3 303 3 HOH HOH . E 4 HOH A 4 304 4 HOH HOH . E 4 HOH A 5 305 5 HOH HOH . E 4 HOH A 6 306 6 HOH HOH . E 4 HOH A 7 307 7 HOH HOH . E 4 HOH A 8 308 8 HOH HOH . E 4 HOH A 9 309 9 HOH HOH . E 4 HOH A 10 310 10 HOH HOH . E 4 HOH A 11 311 11 HOH HOH . E 4 HOH A 12 312 12 HOH HOH . E 4 HOH A 13 313 13 HOH HOH . E 4 HOH A 14 314 14 HOH HOH . E 4 HOH A 15 315 15 HOH HOH . E 4 HOH A 16 316 16 HOH HOH . E 4 HOH A 17 317 17 HOH HOH . E 4 HOH A 18 318 18 HOH HOH . E 4 HOH A 19 319 19 HOH HOH . E 4 HOH A 20 320 20 HOH HOH . E 4 HOH A 21 321 21 HOH HOH . E 4 HOH A 22 322 22 HOH HOH . E 4 HOH A 23 323 23 HOH HOH . E 4 HOH A 24 324 24 HOH HOH . E 4 HOH A 25 325 25 HOH HOH . E 4 HOH A 26 326 26 HOH HOH . E 4 HOH A 27 327 27 HOH HOH . E 4 HOH A 28 328 28 HOH HOH . E 4 HOH A 29 329 29 HOH HOH . E 4 HOH A 30 330 30 HOH HOH . E 4 HOH A 31 331 31 HOH HOH . E 4 HOH A 32 332 32 HOH HOH . E 4 HOH A 33 333 33 HOH HOH . E 4 HOH A 34 334 34 HOH HOH . E 4 HOH A 35 335 35 HOH HOH . E 4 HOH A 36 336 36 HOH HOH . E 4 HOH A 37 337 37 HOH HOH . E 4 HOH A 38 338 38 HOH HOH . E 4 HOH A 39 339 39 HOH HOH . E 4 HOH A 40 340 40 HOH HOH . E 4 HOH A 41 341 41 HOH HOH . E 4 HOH A 42 342 42 HOH HOH . E 4 HOH A 43 343 43 HOH HOH . E 4 HOH A 44 344 44 HOH HOH . E 4 HOH A 45 345 45 HOH HOH . E 4 HOH A 46 346 46 HOH HOH . E 4 HOH A 47 347 47 HOH HOH . E 4 HOH A 48 348 48 HOH HOH . E 4 HOH A 49 349 49 HOH HOH . E 4 HOH A 50 350 50 HOH HOH . E 4 HOH A 51 351 51 HOH HOH . E 4 HOH A 52 352 52 HOH HOH . E 4 HOH A 53 353 53 HOH HOH . E 4 HOH A 54 354 54 HOH HOH . E 4 HOH A 55 355 55 HOH HOH . E 4 HOH A 56 356 56 HOH HOH . E 4 HOH A 57 357 57 HOH HOH . E 4 HOH A 58 358 58 HOH HOH . E 4 HOH A 59 359 59 HOH HOH . E 4 HOH A 60 360 60 HOH HOH . E 4 HOH A 61 361 61 HOH HOH . E 4 HOH A 62 362 62 HOH HOH . E 4 HOH A 63 363 63 HOH HOH . E 4 HOH A 64 364 64 HOH HOH . E 4 HOH A 65 365 65 HOH HOH . E 4 HOH A 66 366 66 HOH HOH . E 4 HOH A 67 367 67 HOH HOH . E 4 HOH A 68 368 68 HOH HOH . E 4 HOH A 69 369 69 HOH HOH . E 4 HOH A 70 370 70 HOH HOH . E 4 HOH A 71 371 71 HOH HOH . E 4 HOH A 72 372 72 HOH HOH . E 4 HOH A 73 373 73 HOH HOH . E 4 HOH A 74 374 74 HOH HOH . E 4 HOH A 75 375 75 HOH HOH . E 4 HOH A 76 376 76 HOH HOH . E 4 HOH A 77 377 77 HOH HOH . E 4 HOH A 78 378 78 HOH HOH . E 4 HOH A 79 379 79 HOH HOH . E 4 HOH A 80 380 80 HOH HOH . E 4 HOH A 81 381 81 HOH HOH . E 4 HOH A 82 382 82 HOH HOH . E 4 HOH A 83 383 83 HOH HOH . E 4 HOH A 84 384 84 HOH HOH . E 4 HOH A 85 385 85 HOH HOH . E 4 HOH A 86 386 86 HOH HOH . E 4 HOH A 87 387 87 HOH HOH . E 4 HOH A 88 388 88 HOH HOH . E 4 HOH A 89 389 89 HOH HOH . E 4 HOH A 90 390 90 HOH HOH . E 4 HOH A 91 391 91 HOH HOH . E 4 HOH A 92 392 92 HOH HOH . E 4 HOH A 93 393 93 HOH HOH . E 4 HOH A 94 394 94 HOH HOH . E 4 HOH A 95 395 95 HOH HOH . E 4 HOH A 96 396 96 HOH HOH . E 4 HOH A 97 397 97 HOH HOH . E 4 HOH A 98 398 98 HOH HOH . E 4 HOH A 99 399 99 HOH HOH . E 4 HOH A 100 400 100 HOH HOH . E 4 HOH A 101 401 101 HOH HOH . E 4 HOH A 102 402 102 HOH HOH . E 4 HOH A 103 403 103 HOH HOH . E 4 HOH A 104 404 104 HOH HOH . E 4 HOH A 105 405 105 HOH HOH . E 4 HOH A 106 406 106 HOH HOH . E 4 HOH A 107 407 107 HOH HOH . E 4 HOH A 108 408 108 HOH HOH . E 4 HOH A 109 409 109 HOH HOH . E 4 HOH A 110 410 110 HOH HOH . E 4 HOH A 111 411 111 HOH HOH . E 4 HOH A 112 412 112 HOH HOH . E 4 HOH A 113 413 113 HOH HOH . E 4 HOH A 114 414 114 HOH HOH . E 4 HOH A 115 415 115 HOH HOH . E 4 HOH A 116 416 116 HOH HOH . E 4 HOH A 117 417 117 HOH HOH . E 4 HOH A 118 418 118 HOH HOH . E 4 HOH A 119 419 119 HOH HOH . E 4 HOH A 120 420 120 HOH HOH . E 4 HOH A 121 421 121 HOH HOH . E 4 HOH A 122 422 122 HOH HOH . E 4 HOH A 123 423 123 HOH HOH . E 4 HOH A 124 424 124 HOH HOH . E 4 HOH A 125 425 125 HOH HOH . E 4 HOH A 126 426 126 HOH HOH . E 4 HOH A 127 427 127 HOH HOH . E 4 HOH A 128 428 128 HOH HOH . E 4 HOH A 129 429 129 HOH HOH . E 4 HOH A 130 430 130 HOH HOH . E 4 HOH A 131 431 131 HOH HOH . E 4 HOH A 132 432 132 HOH HOH . E 4 HOH A 133 433 133 HOH HOH . E 4 HOH A 134 434 134 HOH HOH . E 4 HOH A 135 435 135 HOH HOH . E 4 HOH A 136 436 136 HOH HOH . E 4 HOH A 137 437 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 1F0 . . . B 2 12.593 8.448 35.68 1 10.3 ? N1 1F0 201 A 1 HETATM 2 C C5 1F0 . . . B 2 11.693 9.088 34.737 1 10.81 ? C5 1F0 201 A 1 HETATM 3 C C57 1F0 . . . B 2 10.648 8.109 34.173 1 11.78 ? C57 1F0 201 A 1 HETATM 4 C C51 1F0 . . . B 2 12.519 9.725 33.633 1 10.04 ? C51 1F0 201 A 1 HETATM 5 C C4 1F0 . . . B 2 11.04 10.162 35.66 1 10.12 ? C4 1F0 201 A 1 HETATM 6 C C47 1F0 . . . B 2 9.715 9.646 36.222 1 12.61 ? C47 1F0 201 A 1 HETATM 7 C C41 1F0 . . . B 2 10.803 11.463 34.943 1 9.81 ? C41 1F0 201 A 1 HETATM 8 N N3 1F0 . . . B 2 11.997 10.317 36.772 1 11.89 ? N3 1F0 201 A 1 HETATM 9 C C2 1F0 . . . B 2 12.817 9.323 36.8 1 11.52 ? C2 1F0 201 A 1 HETATM 10 C C21 1F0 . . . B 2 13.848 9.094 37.832 1 11.43 ? C21 1F0 201 A 1 HETATM 11 C C56 1F0 . . . B 2 13.895 9.911 33.814 1 9.28 ? C56 1F0 201 A 1 HETATM 12 C C55 1F0 . . . B 2 14.651 10.585 32.847 1 9.54 ? C55 1F0 201 A 1 HETATM 13 C C54 1F0 . . . B 2 14.023 11.069 31.699 1 9.28 ? C54 1F0 201 A 1 HETATM 14 CL CL5 1F0 . . . B 2 14.949 12.02 30.533 1 11.71 ? CL5 1F0 201 A 1 HETATM 15 C C53 1F0 . . . B 2 12.664 10.823 31.476 1 8.89 ? C53 1F0 201 A 1 HETATM 16 C C52 1F0 . . . B 2 11.913 10.151 32.443 1 9.21 ? C52 1F0 201 A 1 HETATM 17 C C42 1F0 . . . B 2 9.543 11.722 34.394 1 10.88 ? C42 1F0 201 A 1 HETATM 18 C C43 1F0 . . . B 2 9.314 12.907 33.701 1 11.12 ? C43 1F0 201 A 1 HETATM 19 C C44 1F0 . . . B 2 10.353 13.825 33.559 1 9.25 ? C44 1F0 201 A 1 HETATM 20 CL CL4 1F0 . . . B 2 10.088 15.305 32.647 1 12.53 ? CL4 1F0 201 A 1 HETATM 21 C C45 1F0 . . . B 2 11.608 13.583 34.122 1 10.88 ? C45 1F0 201 A 1 HETATM 22 C C46 1F0 . . . B 2 11.828 12.4 34.819 1 9.24 ? C46 1F0 201 A 1 HETATM 23 C C10 1F0 . . . B 2 13.066 7.097 35.478 1 11.64 ? C10 1F0 201 A 1 HETATM 24 O O10 1F0 . . . B 2 13.331 6.708 34.334 1 10.02 ? O10 1F0 201 A 1 HETATM 25 N N10 1F0 . . . B 2 13.241 6.247 36.58 1 10.32 ? N10 1F0 201 A 1 HETATM 26 C C14 1F0 . . . B 2 13.894 4.961 36.36 1 11.41 ? C14 1F0 201 A 1 HETATM 27 C C13 1F0 . . . B 2 14.773 4.636 37.554 1 12.28 ? C13 1F0 201 A 1 HETATM 28 N N12 1F0 . . . B 2 13.986 4.65 38.811 1 12.76 ? N12 1F0 201 A 1 HETATM 29 C C12 1F0 . . . B 2 13.338 5.98 39.031 1 10.2 ? C12 1F0 201 A 1 HETATM 30 C C11 1F0 . . . B 2 12.468 6.395 37.819 1 10.56 ? C11 1F0 201 A 1 HETATM 31 C C22 1F0 . . . B 2 13.564 9.406 39.163 1 10.49 ? C22 1F0 201 A 1 HETATM 32 C C23 1F0 . . . B 2 14.532 9.237 40.156 1 12.57 ? C23 1F0 201 A 1 HETATM 33 C C24 1F0 . . . B 2 15.8 8.743 39.831 1 13.71 ? C24 1F0 201 A 1 HETATM 34 C C30 1F0 . . . B 2 16.824 8.563 40.922 1 14.6 ? C30 1F0 201 A 1 HETATM 35 C C33 1F0 . . . B 2 17.797 9.747 40.911 1 16.85 ? C33 1F0 201 A 1 HETATM 36 C C31 1F0 . . . B 2 17.604 7.264 40.697 1 17.54 ? C31 1F0 201 A 1 HETATM 37 C C25 1F0 . . . B 2 16.109 8.427 38.504 1 11.44 ? C25 1F0 201 A 1 HETATM 38 C C26 1F0 . . . B 2 15.127 8.612 37.519 1 11.55 ? C26 1F0 201 A 1 HETATM 39 O O27 1F0 . . . B 2 15.422 8.34 36.211 1 11.1 ? O27 1F0 201 A 1 HETATM 40 C C28 1F0 . . . B 2 16.739 7.881 35.949 1 10.34 ? C28 1F0 201 A 1 HETATM 41 C C29 1F0 . . . B 2 16.882 7.542 34.459 1 10.52 ? C29 1F0 201 A 1 HETATM 42 C C32 1F0 . . . B 2 16.117 8.501 42.279 1 16.52 ? C32 1F0 201 A 1 HETATM 43 C C16 1F0 . . . B 2 14.105 4.266 41.285 1 15.54 ? C16 1F0 201 A 1 HETATM 44 C C17 1F0 . . . B 2 15.068 3.786 42.382 1 17.38 ? C17 1F0 201 A 1 HETATM 45 S S17 1F0 . . . B 2 14.47 4.217 43.996 1 18.38 ? S17 1F0 201 A 1 HETATM 46 C C19 1F0 . . . B 2 15.569 3.418 45.143 1 20.92 ? C19 1F0 201 A 1 HETATM 47 O O17 1F0 . . . B 2 13.138 3.656 44.163 1 18.64 ? O17 1F0 201 A 1 HETATM 48 O O18 1F0 . . . B 2 14.594 5.666 44.158 1 22.2 ? O18 1F0 201 A 1 HETATM 49 C C15 1F0 . . . B 2 14.837 4.223 39.942 1 13.15 ? C15 1F0 201 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 49 #