data_4IR7 # _model_server_result.job_id YWvwjPU-rUabTs9CBz9Y-A _model_server_result.datetime_utc '2024-10-16 14:17:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ir7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4IR7 # _exptl.entry_id 4IR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 529.524 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-[(S)-(dodecanoyloxy)(hydroxy)phosphoryl]adenosine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IR7 _cell.length_a 138.212 _cell.length_b 138.212 _cell.length_c 82.582 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 55.054667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H36 N5 O8 P' _chem_comp.formula_weight 529.524 _chem_comp.id 1ZZ _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-[(S)-(dodecanoyloxy)(hydroxy)phosphoryl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O3 1ZZ doub 1 n n P O4 1ZZ sing 2 n n N1 C17 1ZZ sing 3 n n N1 C18 1ZZ sing 4 n y O1 C12 1ZZ doub 5 n n C2 C1 1ZZ sing 6 n n N2 C18 1ZZ doub 7 n y O2 P 1ZZ sing 8 n n C3 C2 1ZZ sing 9 n n N3 C20 1ZZ doub 10 n y C4 C3 1ZZ sing 11 n n N4 C21 1ZZ doub 12 n y N4 C22 1ZZ sing 13 n y C5 C4 1ZZ sing 14 n n N5 C22 1ZZ sing 15 n n O5 P 1ZZ sing 16 n n C6 C5 1ZZ sing 17 n n O6 C14 1ZZ sing 18 n n C7 C6 1ZZ sing 19 n n O7 C16 1ZZ sing 20 n n C8 C7 1ZZ sing 21 n n C8 C9 1ZZ sing 22 n n C9 C10 1ZZ sing 23 n n C10 C11 1ZZ sing 24 n n C12 O2 1ZZ sing 25 n n C12 C11 1ZZ sing 26 n n C13 O5 1ZZ sing 27 n n C14 C13 1ZZ sing 28 n n C15 O8 1ZZ sing 29 n n C15 C14 1ZZ sing 30 n n C16 C15 1ZZ sing 31 n n C16 C17 1ZZ sing 32 n n C17 O6 1ZZ sing 33 n n C19 N2 1ZZ sing 34 n y C19 C20 1ZZ sing 35 n y C20 N1 1ZZ sing 36 n y C21 N3 1ZZ sing 37 n y C22 C19 1ZZ doub 38 n y C1 H1 1ZZ sing 39 n n C1 H1A 1ZZ sing 40 n n C1 H1B 1ZZ sing 41 n n C2 H2 1ZZ sing 42 n n C2 H2A 1ZZ sing 43 n n C3 H3 1ZZ sing 44 n n C3 H3A 1ZZ sing 45 n n C4 H4 1ZZ sing 46 n n C4 H4A 1ZZ sing 47 n n O4 HO4 1ZZ sing 48 n n C5 H5 1ZZ sing 49 n n C5 H5A 1ZZ sing 50 n n N5 HN5 1ZZ sing 51 n n N5 HN5A 1ZZ sing 52 n n O7 HO7 1ZZ sing 53 n n C8 H8 1ZZ sing 54 n n C8 H8A 1ZZ sing 55 n n O8 HO8 1ZZ sing 56 n n C9 H9 1ZZ sing 57 n n C9 H9A 1ZZ sing 58 n n C10 H10 1ZZ sing 59 n n C10 H10A 1ZZ sing 60 n n C11 H11 1ZZ sing 61 n n C11 H11A 1ZZ sing 62 n n C13 H13 1ZZ sing 63 n n C13 H13A 1ZZ sing 64 n n C14 H14 1ZZ sing 65 n n C15 H15 1ZZ sing 66 n n C16 H16 1ZZ sing 67 n n C17 H17 1ZZ sing 68 n n C18 H18 1ZZ sing 69 n n C21 H21 1ZZ sing 70 n n C6 H6 1ZZ sing 71 n n C6 H34 1ZZ sing 72 n n C7 H7 1ZZ sing 73 n n C7 H36 1ZZ sing 74 n n # _atom_sites.entry_id 4IR7 _atom_sites.fract_transf_matrix[1][1] 0.007235 _atom_sites.fract_transf_matrix[1][2] 0.004177 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1ZZ A 1 601 1 1ZZ C12 . C 3 MG A 1 602 2 MG MG . D 4 HOH A 1 701 1 HOH HOH . D 4 HOH A 2 702 2 HOH HOH . D 4 HOH A 3 703 3 HOH HOH . D 4 HOH A 4 704 4 HOH HOH . D 4 HOH A 5 705 5 HOH HOH . D 4 HOH A 6 706 6 HOH HOH . D 4 HOH A 7 707 7 HOH HOH . D 4 HOH A 8 708 8 HOH HOH . D 4 HOH A 9 709 9 HOH HOH . D 4 HOH A 10 710 10 HOH HOH . D 4 HOH A 11 711 11 HOH HOH . D 4 HOH A 12 712 12 HOH HOH . D 4 HOH A 13 713 13 HOH HOH . D 4 HOH A 14 714 14 HOH HOH . D 4 HOH A 15 715 15 HOH HOH . D 4 HOH A 16 716 16 HOH HOH . D 4 HOH A 17 717 17 HOH HOH . D 4 HOH A 18 718 18 HOH HOH . D 4 HOH A 19 719 19 HOH HOH . D 4 HOH A 20 720 20 HOH HOH . D 4 HOH A 21 721 21 HOH HOH . D 4 HOH A 22 722 22 HOH HOH . D 4 HOH A 23 723 23 HOH HOH . D 4 HOH A 24 724 24 HOH HOH . D 4 HOH A 25 725 25 HOH HOH . D 4 HOH A 26 726 26 HOH HOH . D 4 HOH A 27 727 27 HOH HOH . D 4 HOH A 28 728 28 HOH HOH . D 4 HOH A 29 729 29 HOH HOH . D 4 HOH A 30 730 30 HOH HOH . D 4 HOH A 31 731 31 HOH HOH . D 4 HOH A 32 732 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 1ZZ . . . B 2 -60.346 9.632 17.258 1 90.26 ? P 1ZZ 601 A 1 HETATM 2 C C1 1ZZ . . . B 2 -57.957 12.468 4.175 1 58.74 ? C1 1ZZ 601 A 1 HETATM 3 N N1 1ZZ . . . B 2 -54.576 8.714 15.972 1 67.41 ? N1 1ZZ 601 A 1 HETATM 4 O O1 1ZZ . . . B 2 -60.143 8.658 14.101 1 91.72 ? O1 1ZZ 601 A 1 HETATM 5 C C2 1ZZ . . . B 2 -58.383 12.57 5.623 1 78.82 ? C2 1ZZ 601 A 1 HETATM 6 N N2 1ZZ . . . B 2 -54.404 9.9 14.135 1 63.52 ? N2 1ZZ 601 A 1 HETATM 7 O O2 1ZZ . . . B 2 -61.016 9.929 15.827 1 85.88 ? O2 1ZZ 601 A 1 HETATM 8 C C3 1ZZ . . . B 2 -59.267 11.394 6.02 1 78.69 ? C3 1ZZ 601 A 1 HETATM 9 N N3 1ZZ . . . B 2 -52.38 7.605 15.789 1 57.24 ? N3 1ZZ 601 A 1 HETATM 10 O O3 1ZZ . . . B 2 -60.614 8.198 17.648 1 97.58 ? O3 1ZZ 601 A 1 HETATM 11 C C4 1ZZ . . . B 2 -58.508 10.076 5.931 1 64.6 ? C4 1ZZ 601 A 1 HETATM 12 N N4 1ZZ . . . B 2 -51.143 8.221 13.906 1 55.35 ? N4 1ZZ 601 A 1 HETATM 13 O O4 1ZZ . . . B 2 -60.716 10.759 18.194 1 80.72 ? O4 1ZZ 601 A 1 HETATM 14 C C5 1ZZ . . . B 2 -58.08 9.588 7.308 1 71.35 ? C5 1ZZ 601 A 1 HETATM 15 N N5 1ZZ . . . B 2 -51.98 9.773 12.357 1 57.52 ? N5 1ZZ 601 A 1 HETATM 16 O O5 1ZZ . . . B 2 -58.78 9.758 16.901 1 71.14 ? O5 1ZZ 601 A 1 HETATM 17 C C6 1ZZ . . . B 2 -59.27 9.478 8.253 1 69.91 ? C6 1ZZ 601 A 1 HETATM 18 O O6 1ZZ . . . B 2 -56.531 8.222 17.277 1 76.94 ? O6 1ZZ 601 A 1 HETATM 19 C C7 1ZZ . . . B 2 -58.799 9.053 9.638 1 70.41 ? C7 1ZZ 601 A 1 HETATM 20 O O7 1ZZ . . . B 2 -53.897 8.028 19.328 1 61.84 ? O7 1ZZ 601 A 1 HETATM 21 C C8 1ZZ . . . B 2 -58.309 10.256 10.433 1 69.15 ? C8 1ZZ 601 A 1 HETATM 22 O O8 1ZZ . . . B 2 -55.787 9.204 20.474 1 72.31 ? O8 1ZZ 601 A 1 HETATM 23 C C9 1ZZ . . . B 2 -59.284 10.594 11.552 1 68.11 ? C9 1ZZ 601 A 1 HETATM 24 C C10 1ZZ . . . B 2 -58.592 10.501 12.906 1 67.09 ? C10 1ZZ 601 A 1 HETATM 25 C C11 1ZZ . . . B 2 -59.527 10.958 14.016 1 70.93 ? C11 1ZZ 601 A 1 HETATM 26 C C12 1ZZ . . . B 2 -60.229 9.761 14.616 1 85.42 ? C12 1ZZ 601 A 1 HETATM 27 C C13 1ZZ . . . B 2 -57.835 10.186 17.877 1 67.6 ? C13 1ZZ 601 A 1 HETATM 28 C C14 1ZZ . . . B 2 -56.979 9.029 18.371 1 77.89 ? C14 1ZZ 601 A 1 HETATM 29 C C15 1ZZ . . . B 2 -55.748 9.558 19.088 1 66.3 ? C15 1ZZ 601 A 1 HETATM 30 C C16 1ZZ . . . B 2 -54.553 8.913 18.416 1 54.77 ? C16 1ZZ 601 A 1 HETATM 31 C C17 1ZZ . . . B 2 -55.102 8.133 17.233 1 70.57 ? C17 1ZZ 601 A 1 HETATM 32 C C18 1ZZ . . . B 2 -55.198 9.611 15.193 1 68.84 ? C18 1ZZ 601 A 1 HETATM 33 C C19 1ZZ . . . B 2 -53.275 9.174 14.263 1 63.99 ? C19 1ZZ 601 A 1 HETATM 34 C C20 1ZZ . . . B 2 -53.391 8.429 15.423 1 62.23 ? C20 1ZZ 601 A 1 HETATM 35 C C21 1ZZ . . . B 2 -51.278 7.51 15.034 1 54.31 ? C21 1ZZ 601 A 1 HETATM 36 C C22 1ZZ . . . B 2 -52.122 9.057 13.498 1 59.46 ? C22 1ZZ 601 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 36 #