data_4IRB
#
_model_server_result.job_id            8Vfbum-oNlNZxE293jsmhg 
_model_server_result.datetime_utc      '2024-11-26 01:44:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4irb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":302}' 
#
_entry.id    4IRB 
#
_exptl.entry_id    4IRB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4IRB 
_cell.length_a            101.9 
_cell.length_b            130.51 
_cell.length_c            86.31 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4IRB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,K,L 1 1 
C,D,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            LEU 
_struct_conn.ptnr1_label_seq_id             190 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             LEU 
_struct_conn.ptnr1_auth_seq_id              170 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            N 
_struct_conn.ptnr2_label_comp_id            PRO 
_struct_conn.ptnr2_label_seq_id             191 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             PRO 
_struct_conn.ptnr2_auth_seq_id              173 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.346 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4IRB 
_atom_sites.fract_transf_matrix[1][1]    0.009814 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007662 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011586 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 301 301 SO4 SO4 . 
F 3 GOL A 1 302 302 GOL GOL . 
G 2 SO4 B 1 301 301 SO4 SO4 . 
H 4 CL B 1 302 302 CL CL . 
I 2 SO4 C 1 301 301 SO4 SO4 . 
J 2 SO4 D 1 301 301 SO4 SO4 . 
K 5 HOH A 1 401 401 HOH HOH . 
K 5 HOH A 2 402 402 HOH HOH . 
K 5 HOH A 3 403 403 HOH HOH . 
K 5 HOH A 4 404 404 HOH HOH . 
K 5 HOH A 5 405 405 HOH HOH . 
K 5 HOH A 6 406 406 HOH HOH . 
K 5 HOH A 7 407 407 HOH HOH . 
K 5 HOH A 8 408 408 HOH HOH . 
K 5 HOH A 9 409 409 HOH HOH . 
K 5 HOH A 10 410 410 HOH HOH . 
K 5 HOH A 11 411 411 HOH HOH . 
K 5 HOH A 12 412 412 HOH HOH . 
K 5 HOH A 13 413 413 HOH HOH . 
K 5 HOH A 14 414 414 HOH HOH . 
K 5 HOH A 15 415 415 HOH HOH . 
K 5 HOH A 16 416 416 HOH HOH . 
K 5 HOH A 17 417 417 HOH HOH . 
K 5 HOH A 18 418 418 HOH HOH . 
K 5 HOH A 19 419 419 HOH HOH . 
K 5 HOH A 20 420 420 HOH HOH . 
K 5 HOH A 21 421 421 HOH HOH . 
K 5 HOH A 22 422 422 HOH HOH . 
K 5 HOH A 23 423 423 HOH HOH . 
K 5 HOH A 24 424 424 HOH HOH . 
K 5 HOH A 25 425 425 HOH HOH . 
K 5 HOH A 26 426 426 HOH HOH . 
K 5 HOH A 27 427 427 HOH HOH . 
K 5 HOH A 28 428 428 HOH HOH . 
K 5 HOH A 29 429 429 HOH HOH . 
K 5 HOH A 30 430 430 HOH HOH . 
K 5 HOH A 31 431 431 HOH HOH . 
K 5 HOH A 32 432 432 HOH HOH . 
K 5 HOH A 33 433 433 HOH HOH . 
L 5 HOH B 1 401 401 HOH HOH . 
L 5 HOH B 2 402 402 HOH HOH . 
L 5 HOH B 3 403 403 HOH HOH . 
L 5 HOH B 4 404 404 HOH HOH . 
L 5 HOH B 5 405 405 HOH HOH . 
L 5 HOH B 6 406 406 HOH HOH . 
L 5 HOH B 7 407 407 HOH HOH . 
L 5 HOH B 8 408 408 HOH HOH . 
L 5 HOH B 9 409 409 HOH HOH . 
L 5 HOH B 10 410 410 HOH HOH . 
L 5 HOH B 11 411 411 HOH HOH . 
L 5 HOH B 12 412 412 HOH HOH . 
L 5 HOH B 13 413 413 HOH HOH . 
L 5 HOH B 14 414 414 HOH HOH . 
L 5 HOH B 15 415 415 HOH HOH . 
L 5 HOH B 16 416 416 HOH HOH . 
L 5 HOH B 17 417 417 HOH HOH . 
L 5 HOH B 18 418 418 HOH HOH . 
L 5 HOH B 19 419 419 HOH HOH . 
L 5 HOH B 20 420 420 HOH HOH . 
L 5 HOH B 21 421 421 HOH HOH . 
L 5 HOH B 22 422 422 HOH HOH . 
L 5 HOH B 23 423 423 HOH HOH . 
L 5 HOH B 24 424 424 HOH HOH . 
L 5 HOH B 25 425 425 HOH HOH . 
L 5 HOH B 26 426 426 HOH HOH . 
L 5 HOH B 27 427 427 HOH HOH . 
L 5 HOH B 28 428 428 HOH HOH . 
L 5 HOH B 29 429 429 HOH HOH . 
L 5 HOH B 30 430 430 HOH HOH . 
M 5 HOH C 1 401 401 HOH HOH . 
M 5 HOH C 2 402 402 HOH HOH . 
M 5 HOH C 3 403 403 HOH HOH . 
M 5 HOH C 4 404 404 HOH HOH . 
M 5 HOH C 5 405 405 HOH HOH . 
M 5 HOH C 6 406 406 HOH HOH . 
M 5 HOH C 7 407 407 HOH HOH . 
M 5 HOH C 8 408 408 HOH HOH . 
M 5 HOH C 9 409 409 HOH HOH . 
M 5 HOH C 10 410 410 HOH HOH . 
M 5 HOH C 11 411 411 HOH HOH . 
M 5 HOH C 12 412 412 HOH HOH . 
M 5 HOH C 13 413 413 HOH HOH . 
M 5 HOH C 14 414 414 HOH HOH . 
M 5 HOH C 15 415 415 HOH HOH . 
M 5 HOH C 16 416 416 HOH HOH . 
M 5 HOH C 17 417 417 HOH HOH . 
M 5 HOH C 18 418 418 HOH HOH . 
M 5 HOH C 19 419 419 HOH HOH . 
M 5 HOH C 20 420 420 HOH HOH . 
M 5 HOH C 21 421 421 HOH HOH . 
M 5 HOH C 22 422 422 HOH HOH . 
M 5 HOH C 23 423 423 HOH HOH . 
M 5 HOH C 24 424 424 HOH HOH . 
M 5 HOH C 25 425 425 HOH HOH . 
M 5 HOH C 26 426 426 HOH HOH . 
M 5 HOH C 27 427 427 HOH HOH . 
N 5 HOH D 1 401 401 HOH HOH . 
N 5 HOH D 2 402 402 HOH HOH . 
N 5 HOH D 3 403 403 HOH HOH . 
N 5 HOH D 4 404 404 HOH HOH . 
N 5 HOH D 5 405 405 HOH HOH . 
N 5 HOH D 6 406 406 HOH HOH . 
N 5 HOH D 7 407 407 HOH HOH . 
N 5 HOH D 8 408 408 HOH HOH . 
N 5 HOH D 9 409 409 HOH HOH . 
N 5 HOH D 10 410 410 HOH HOH . 
N 5 HOH D 11 411 411 HOH HOH . 
N 5 HOH D 12 412 412 HOH HOH . 
N 5 HOH D 13 413 413 HOH HOH . 
N 5 HOH D 14 414 414 HOH HOH . 
N 5 HOH D 15 415 415 HOH HOH . 
N 5 HOH D 16 416 416 HOH HOH . 
N 5 HOH D 17 417 417 HOH HOH . 
N 5 HOH D 18 418 418 HOH HOH . 
N 5 HOH D 19 419 419 HOH HOH . 
N 5 HOH D 20 420 420 HOH HOH . 
N 5 HOH D 21 421 421 HOH HOH . 
N 5 HOH D 22 422 422 HOH HOH . 
N 5 HOH D 23 423 423 HOH HOH . 
N 5 HOH D 24 424 424 HOH HOH . 
N 5 HOH D 25 425 425 HOH HOH . 
N 5 HOH D 26 426 426 HOH HOH . 
N 5 HOH D 27 427 427 HOH HOH . 
N 5 HOH D 28 428 428 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 31.078 13.27 49.987 1 51.83 ? C1 GOL 302 A 1 
HETATM 2 O O1 GOL . . . F 3 31.211 12.03 49.336 1 40.77 ? O1 GOL 302 A 1 
HETATM 3 C C2 GOL . . . F 3 32.384 14.057 50.095 1 62.88 ? C2 GOL 302 A 1 
HETATM 4 O O2 GOL . . . F 3 32.145 15.448 50.274 1 67.76 ? O2 GOL 302 A 1 
HETATM 5 C C3 GOL . . . F 3 33.192 13.655 51.301 1 65.82 ? C3 GOL 302 A 1 
HETATM 6 O O3 GOL . . . F 3 34.271 14.558 51.405 1 68.31 ? O3 GOL 302 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#