data_4IRE # _model_server_result.job_id f7RWk-WAKQyu6Nrdqy8jNg _model_server_result.datetime_utc '2024-11-27 20:25:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ire # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":404}' # _entry.id 4IRE # _exptl.entry_id 4IRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.669 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tetradecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.57 _cell.angle_gamma 90 _cell.entry_id 4IRE _cell.length_a 182.03 _cell.length_b 133.62 _cell.length_c 161.43 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 T N N ? 2 U N N ? 2 KA N N ? 2 LA N N ? 2 NA N N # _chem_comp.formula 'C26 H50 O11' _chem_comp.formula_weight 538.669 _chem_comp.id LMD _chem_comp.mon_nstd_flag . _chem_comp.name 'tetradecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms n-Tetradecyl-b-D-maltopyranosid # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C4 LMD sing 200 n n O6 C6 LMD sing 201 n n C5 C6 LMD sing 202 n n C5 C4 LMD sing 203 n n C5 O5 LMD sing 204 n n C4 C3 LMD sing 205 n n C3 O3 LMD sing 206 n n C3 C2 LMD sing 207 n n O5 C1 LMD sing 208 n n O2 C2 LMD sing 209 n n C2 C1 LMD sing 210 n n C1 O1 LMD sing 211 n n O1 CAP LMD sing 212 n n OAU CAO LMD sing 213 n n CAP CAO LMD sing 214 n n CAP CAQ LMD sing 215 n n CAR CAQ LMD sing 216 n n CAR OAW LMD sing 217 n n CAO CAN LMD sing 218 n n CAQ OAV LMD sing 219 n n CAN OAT LMD sing 220 n n CAN CAM LMD sing 221 n n OAV CAM LMD sing 222 n n CAM OAS LMD sing 223 n n OAS CAX LMD sing 224 n n CAX CAY LMD sing 225 n n CAY CAZ LMD sing 226 n n CAZ CBA LMD sing 227 n n CBA CBB LMD sing 228 n n CBB CBC LMD sing 229 n n CBC CBD LMD sing 230 n n CBD CBE LMD sing 231 n n CBE CBF LMD sing 232 n n CBF CBG LMD sing 233 n n CBG CBH LMD sing 234 n n CBH CBI LMD sing 235 n n CBI CBJ LMD sing 236 n n CBJ CBK LMD sing 237 n n CBK H1 LMD sing 238 n n CBK H2 LMD sing 239 n n CBK H3 LMD sing 240 n n CBJ H4 LMD sing 241 n n CBJ H5 LMD sing 242 n n CBI H6 LMD sing 243 n n CBI H7 LMD sing 244 n n CBH H8 LMD sing 245 n n CBH H9 LMD sing 246 n n CBG H10 LMD sing 247 n n CBG H11 LMD sing 248 n n CBF H12 LMD sing 249 n n CBF H13 LMD sing 250 n n CBE H14 LMD sing 251 n n CBE H15 LMD sing 252 n n CBD H16 LMD sing 253 n n CBD H17 LMD sing 254 n n CBC H18 LMD sing 255 n n CBC H19 LMD sing 256 n n CBB H20 LMD sing 257 n n CBB H21 LMD sing 258 n n CBA H22 LMD sing 259 n n CBA H23 LMD sing 260 n n CAZ H24 LMD sing 261 n n CAZ H25 LMD sing 262 n n CAY H26 LMD sing 263 n n CAY H27 LMD sing 264 n n CAX H28 LMD sing 265 n n CAX H29 LMD sing 266 n n CAM H30 LMD sing 267 n n CAN H31 LMD sing 268 n n OAT H32 LMD sing 269 n n CAO H33 LMD sing 270 n n OAU H34 LMD sing 271 n n CAQ H35 LMD sing 272 n n CAR H36 LMD sing 273 n n CAR H37 LMD sing 274 n n OAW H38 LMD sing 275 n n CAP H39 LMD sing 276 n n C1 H40 LMD sing 277 n n C5 H41 LMD sing 278 n n C6 H42 LMD sing 279 n n C6 H43 LMD sing 280 n n O6 H44 LMD sing 281 n n C4 H45 LMD sing 282 n n O4 H46 LMD sing 283 n n C3 H47 LMD sing 284 n n O3 H48 LMD sing 285 n n C2 H49 LMD sing 286 n n O2 H50 LMD sing 287 n n # _atom_sites.entry_id 4IRE _atom_sites.fract_transf_matrix[1][1] 0.005494 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001225 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 LMD A 1 401 401 LMD LMD . G 3 PC1 A 1 402 402 PC1 PC1 . H 3 PC1 A 1 403 403 PC1 PC1 . I 4 OXL A 1 404 501 OXL OXL . J 4 OXL A 1 405 502 OXL OXL . K 4 OXL A 1 406 503 OXL OXL . L 5 ACT A 1 407 601 ACT ACT . M 5 ACT A 1 408 602 ACT ACT . N 3 PC1 B 1 401 402 PC1 PC1 . O 3 PC1 B 1 402 403 PC1 PC1 . P 4 OXL B 1 403 501 OXL OXL . Q 4 OXL B 1 404 502 OXL OXL . R 5 ACT B 1 405 601 ACT ACT . S 5 ACT B 1 406 602 ACT ACT . T 2 LMD C 1 401 401 LMD LMD . U 2 LMD C 1 402 401 LMD LMD . V 3 PC1 C 1 403 402 PC1 PC1 . W 3 PC1 C 1 404 403 PC1 PC1 . X 4 OXL C 1 405 502 OXL OXL . Y 4 OXL C 1 406 503 OXL OXL . Z 5 ACT C 1 407 601 ACT ACT . AA 5 ACT C 1 408 602 ACT ACT . BA 4 OXL D 1 501 501 OXL OXL . CA 3 PC1 D 1 502 402 PC1 PC1 . DA 3 PC1 D 1 503 403 PC1 PC1 . EA 4 OXL D 1 504 502 OXL OXL . FA 4 OXL D 1 505 503 OXL OXL . GA 4 OXL D 1 506 504 OXL OXL . HA 4 OXL D 1 507 505 OXL OXL . IA 5 ACT D 1 508 601 ACT ACT . JA 5 ACT D 1 509 602 ACT ACT . KA 2 LMD E 1 401 404 LMD LMD . LA 2 LMD E 1 402 401 LMD LMD . MA 4 OXL E 1 403 501 OXL OXL . NA 2 LMD E 1 404 401 LMD LMD . OA 3 PC1 E 1 405 402 PC1 PC1 . PA 3 PC1 E 1 406 403 PC1 PC1 . QA 4 OXL E 1 407 501 OXL OXL . RA 4 OXL E 1 408 502 OXL OXL . SA 4 OXL E 1 409 503 OXL OXL . TA 4 OXL E 1 410 504 OXL OXL . UA 5 ACT E 1 411 601 ACT ACT . VA 5 ACT E 1 412 602 ACT ACT . WA 6 HOH A 1 501 2 HOH HOH . WA 6 HOH A 2 502 10 HOH HOH . WA 6 HOH A 3 503 21 HOH HOH . WA 6 HOH A 4 504 43 HOH HOH . WA 6 HOH A 5 505 44 HOH HOH . XA 6 HOH B 1 501 6 HOH HOH . XA 6 HOH B 2 502 9 HOH HOH . XA 6 HOH B 3 503 11 HOH HOH . XA 6 HOH B 4 504 12 HOH HOH . XA 6 HOH B 5 505 13 HOH HOH . XA 6 HOH B 6 506 23 HOH HOH . XA 6 HOH B 7 507 24 HOH HOH . XA 6 HOH B 8 508 36 HOH HOH . XA 6 HOH B 9 509 37 HOH HOH . XA 6 HOH B 10 510 47 HOH HOH . XA 6 HOH B 11 511 49 HOH HOH . XA 6 HOH B 12 512 51 HOH HOH . YA 6 HOH C 1 501 1 HOH HOH . YA 6 HOH C 2 502 3 HOH HOH . YA 6 HOH C 3 503 4 HOH HOH . YA 6 HOH C 4 504 8 HOH HOH . YA 6 HOH C 5 505 14 HOH HOH . YA 6 HOH C 6 506 15 HOH HOH . YA 6 HOH C 7 507 25 HOH HOH . YA 6 HOH C 8 508 27 HOH HOH . YA 6 HOH C 9 509 30 HOH HOH . YA 6 HOH C 10 510 39 HOH HOH . YA 6 HOH C 11 511 40 HOH HOH . YA 6 HOH C 12 512 48 HOH HOH . ZA 6 HOH D 1 601 16 HOH HOH . ZA 6 HOH D 2 602 17 HOH HOH . ZA 6 HOH D 3 603 20 HOH HOH . ZA 6 HOH D 4 604 28 HOH HOH . ZA 6 HOH D 5 605 29 HOH HOH . ZA 6 HOH D 6 606 32 HOH HOH . ZA 6 HOH D 7 607 35 HOH HOH . ZA 6 HOH D 8 608 38 HOH HOH . ZA 6 HOH D 9 609 41 HOH HOH . ZA 6 HOH D 10 610 42 HOH HOH . ZA 6 HOH D 11 611 45 HOH HOH . ZA 6 HOH D 12 612 46 HOH HOH . AB 6 HOH E 1 501 5 HOH HOH . AB 6 HOH E 2 502 7 HOH HOH . AB 6 HOH E 3 503 18 HOH HOH . AB 6 HOH E 4 504 19 HOH HOH . AB 6 HOH E 5 505 22 HOH HOH . AB 6 HOH E 6 506 26 HOH HOH . AB 6 HOH E 7 507 31 HOH HOH . AB 6 HOH E 8 508 33 HOH HOH . AB 6 HOH E 9 509 34 HOH HOH . AB 6 HOH E 10 510 50 HOH HOH . AB 6 HOH E 11 511 52 HOH HOH . AB 6 HOH E 12 512 53 HOH HOH . AB 6 HOH E 13 513 54 HOH HOH . AB 6 HOH E 14 514 55 HOH HOH . AB 6 HOH E 15 515 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBK LMD . . . NA 2 61.323 -29.207 45.805 1 83.31 ? CBK LMD 404 E 1 HETATM 2 C CBJ LMD . . . NA 2 62.548 -28.375 45.382 1 73.8 ? CBJ LMD 404 E 1 HETATM 3 C CBI LMD . . . NA 2 62.052 -27.156 44.587 1 79.24 ? CBI LMD 404 E 1 HETATM 4 C CBH LMD . . . NA 2 60.959 -27.611 43.592 1 70.24 ? CBH LMD 404 E 1 HETATM 5 C CBG LMD . . . NA 2 59.774 -26.622 43.573 1 76.3 ? CBG LMD 404 E 1 HETATM 6 C CBF LMD . . . NA 2 58.933 -26.753 42.285 1 81.98 ? CBF LMD 404 E 1 HETATM 7 C CBE LMD . . . NA 2 59.635 -26.142 41.047 1 80.46 ? CBE LMD 404 E 1 HETATM 8 C CBD LMD . . . NA 2 58.63 -25.332 40.189 1 80.33 ? CBD LMD 404 E 1 HETATM 9 C CBC LMD . . . NA 2 57.204 -25.925 40.287 1 85.41 ? CBC LMD 404 E 1 HETATM 10 C CBB LMD . . . NA 2 56.156 -24.95 39.698 1 97.22 ? CBB LMD 404 E 1 HETATM 11 C CBA LMD . . . NA 2 56.627 -24.317 38.363 1 82.68 ? CBA LMD 404 E 1 HETATM 12 C CAZ LMD . . . NA 2 55.632 -24.573 37.199 1 89.76 ? CAZ LMD 404 E 1 HETATM 13 C CAY LMD . . . NA 2 54.254 -23.877 37.385 1 95.66 ? CAY LMD 404 E 1 HETATM 14 C CAX LMD . . . NA 2 53.486 -23.674 36.049 1 119.24 ? CAX LMD 404 E 1 HETATM 15 O OAS LMD . . . NA 2 53.934 -22.461 35.392 1 127.89 ? OAS LMD 404 E 1 HETATM 16 C CAM LMD . . . NA 2 53.576 -22.229 34 1 129.3 ? CAM LMD 404 E 1 HETATM 17 C CAN LMD . . . NA 2 54.539 -22.768 32.912 1 133.59 ? CAN LMD 404 E 1 HETATM 18 O OAT LMD . . . NA 2 55.909 -22.546 33.261 1 122.63 ? OAT LMD 404 E 1 HETATM 19 C CAO LMD . . . NA 2 54.274 -22.123 31.52 1 134.94 ? CAO LMD 404 E 1 HETATM 20 O OAU LMD . . . NA 2 54.73 -23.026 30.517 1 124.31 ? OAU LMD 404 E 1 HETATM 21 O OAV LMD . . . NA 2 52.223 -22.446 33.527 1 124.41 ? OAV LMD 404 E 1 HETATM 22 C CAQ LMD . . . NA 2 51.877 -21.56 32.419 1 144.42 ? CAQ LMD 404 E 1 HETATM 23 C CAR LMD . . . NA 2 50.351 -21.711 32.12 1 143.59 ? CAR LMD 404 E 1 HETATM 24 O OAW LMD . . . NA 2 50.103 -22.253 30.82 1 125.52 ? OAW LMD 404 E 1 HETATM 25 C CAP LMD . . . NA 2 52.793 -21.809 31.167 1 145.8 ? CAP LMD 404 E 1 HETATM 26 O O1 LMD . . . NA 2 52.692 -20.702 30.215 1 146.1 ? O1 LMD 404 E 1 HETATM 27 C C1 LMD . . . NA 2 53.016 -20.862 28.796 1 151.27 ? C1 LMD 404 E 1 HETATM 28 O O5 LMD . . . NA 2 52.994 -22.256 28.371 1 157.19 ? O5 LMD 404 E 1 HETATM 29 C C5 LMD . . . NA 2 51.695 -22.899 28.114 1 147.65 ? C5 LMD 404 E 1 HETATM 30 C C6 LMD . . . NA 2 51.941 -24.303 27.506 1 141.2 ? C6 LMD 404 E 1 HETATM 31 O O6 LMD . . . NA 2 50.893 -25.18 27.906 1 127.09 ? O6 LMD 404 E 1 HETATM 32 C C4 LMD . . . NA 2 50.728 -21.996 27.279 1 147.33 ? C4 LMD 404 E 1 HETATM 33 O O4 LMD . . . NA 2 49.391 -22.483 27.206 1 151.81 ? O4 LMD 404 E 1 HETATM 34 C C3 LMD . . . NA 2 50.701 -20.596 27.949 1 139.8 ? C3 LMD 404 E 1 HETATM 35 O O3 LMD . . . NA 2 49.72 -19.732 27.399 1 125.5 ? O3 LMD 404 E 1 HETATM 36 C C2 LMD . . . NA 2 52.125 -20.016 27.824 1 141.14 ? C2 LMD 404 E 1 HETATM 37 O O2 LMD . . . NA 2 52.08 -18.598 28.01 1 113.56 ? O2 LMD 404 E 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 37 #