data_4IRE
#
_model_server_result.job_id            KUzQSrVo7ahp9NhpLECTxA 
_model_server_result.datetime_utc      '2024-11-05 06:39:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ire 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":404}' 
#
_entry.id    4IRE 
#
_exptl.entry_id    4IRE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.57 
_cell.angle_gamma         90 
_cell.entry_id            4IRE 
_cell.length_a            182.03 
_cell.length_b            133.62 
_cell.length_c            161.43 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4IRE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 N N N 
? 3 O N N 
? 3 V N N 
? 3 W N N 
? 3 CA N N 
? 3 DA N N 
? 3 OA N N 
? 3 PA N N 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 336 n n 
P O14 PC1 doub 337 n n 
P O13 PC1 sing 338 n n 
P O11 PC1 sing 339 n n 
O13 C11 PC1 sing 340 n n 
C11 C12 PC1 sing 341 n n 
C11 H111 PC1 sing 342 n n 
C11 H112 PC1 sing 343 n n 
C12 N PC1 sing 344 n n 
C12 H121 PC1 sing 345 n n 
C12 H122 PC1 sing 346 n n 
N C13 PC1 sing 347 n n 
N C14 PC1 sing 348 n n 
N C15 PC1 sing 349 n n 
C13 H131 PC1 sing 350 n n 
C13 H132 PC1 sing 351 n n 
C13 H133 PC1 sing 352 n n 
C14 H141 PC1 sing 353 n n 
C14 H142 PC1 sing 354 n n 
C14 H143 PC1 sing 355 n n 
C15 H151 PC1 sing 356 n n 
C15 H152 PC1 sing 357 n n 
C15 H153 PC1 sing 358 n n 
O11 C1 PC1 sing 359 n n 
C1 C2 PC1 sing 360 n n 
C1 H11 PC1 sing 361 n n 
C1 H12 PC1 sing 362 n n 
C2 O21 PC1 sing 363 n n 
C2 C3 PC1 sing 364 n n 
C2 H2 PC1 sing 365 n n 
O21 C21 PC1 sing 366 n n 
C21 O22 PC1 doub 367 n n 
C21 C22 PC1 sing 368 n n 
C22 C23 PC1 sing 369 n n 
C22 H221 PC1 sing 370 n n 
C22 H222 PC1 sing 371 n n 
C23 C24 PC1 sing 372 n n 
C23 H231 PC1 sing 373 n n 
C23 H232 PC1 sing 374 n n 
C24 C25 PC1 sing 375 n n 
C24 H241 PC1 sing 376 n n 
C24 H242 PC1 sing 377 n n 
C25 C26 PC1 sing 378 n n 
C25 H251 PC1 sing 379 n n 
C25 H252 PC1 sing 380 n n 
C26 C27 PC1 sing 381 n n 
C26 H261 PC1 sing 382 n n 
C26 H262 PC1 sing 383 n n 
C27 C28 PC1 sing 384 n n 
C27 H271 PC1 sing 385 n n 
C27 H272 PC1 sing 386 n n 
C28 C29 PC1 sing 387 n n 
C28 H281 PC1 sing 388 n n 
C28 H282 PC1 sing 389 n n 
C29 C2A PC1 sing 390 n n 
C29 H291 PC1 sing 391 n n 
C29 H292 PC1 sing 392 n n 
C2A C2B PC1 sing 393 n n 
C2A H2A1 PC1 sing 394 n n 
C2A H2A2 PC1 sing 395 n n 
C2B C2C PC1 sing 396 n n 
C2B H2B1 PC1 sing 397 n n 
C2B H2B2 PC1 sing 398 n n 
C2C C2D PC1 sing 399 n n 
C2C H2C1 PC1 sing 400 n n 
C2C H2C2 PC1 sing 401 n n 
C2D C2E PC1 sing 402 n n 
C2D H2D1 PC1 sing 403 n n 
C2D H2D2 PC1 sing 404 n n 
C2E C2F PC1 sing 405 n n 
C2E H2E1 PC1 sing 406 n n 
C2E H2E2 PC1 sing 407 n n 
C2F C2G PC1 sing 408 n n 
C2F H2F1 PC1 sing 409 n n 
C2F H2F2 PC1 sing 410 n n 
C2G C2H PC1 sing 411 n n 
C2G H2G1 PC1 sing 412 n n 
C2G H2G2 PC1 sing 413 n n 
C2H C2I PC1 sing 414 n n 
C2H H2H1 PC1 sing 415 n n 
C2H H2H2 PC1 sing 416 n n 
C2I H2I1 PC1 sing 417 n n 
C2I H2I2 PC1 sing 418 n n 
C2I H2I3 PC1 sing 419 n n 
C3 O31 PC1 sing 420 n n 
C3 H31 PC1 sing 421 n n 
C3 H32 PC1 sing 422 n n 
O31 C31 PC1 sing 423 n n 
C31 O32 PC1 doub 424 n n 
C31 C32 PC1 sing 425 n n 
C32 C33 PC1 sing 426 n n 
C32 H321 PC1 sing 427 n n 
C32 H322 PC1 sing 428 n n 
C33 C34 PC1 sing 429 n n 
C33 H331 PC1 sing 430 n n 
C33 H332 PC1 sing 431 n n 
C34 C35 PC1 sing 432 n n 
C34 H341 PC1 sing 433 n n 
C34 H342 PC1 sing 434 n n 
C35 C36 PC1 sing 435 n n 
C35 H351 PC1 sing 436 n n 
C35 H352 PC1 sing 437 n n 
C36 C37 PC1 sing 438 n n 
C36 H361 PC1 sing 439 n n 
C36 H362 PC1 sing 440 n n 
C37 C38 PC1 sing 441 n n 
C37 H371 PC1 sing 442 n n 
C37 H372 PC1 sing 443 n n 
C38 C39 PC1 sing 444 n n 
C38 H381 PC1 sing 445 n n 
C38 H382 PC1 sing 446 n n 
C39 C3A PC1 sing 447 n n 
C39 H391 PC1 sing 448 n n 
C39 H392 PC1 sing 449 n n 
C3A C3B PC1 sing 450 n n 
C3A H3A1 PC1 sing 451 n n 
C3A H3A2 PC1 sing 452 n n 
C3B C3C PC1 sing 453 n n 
C3B H3B1 PC1 sing 454 n n 
C3B H3B2 PC1 sing 455 n n 
C3C C3D PC1 sing 456 n n 
C3C H3C1 PC1 sing 457 n n 
C3C H3C2 PC1 sing 458 n n 
C3D C3E PC1 sing 459 n n 
C3D H3D1 PC1 sing 460 n n 
C3D H3D2 PC1 sing 461 n n 
C3E C3F PC1 sing 462 n n 
C3E H3E1 PC1 sing 463 n n 
C3E H3E2 PC1 sing 464 n n 
C3F C3G PC1 sing 465 n n 
C3F H3F1 PC1 sing 466 n n 
C3F H3F2 PC1 sing 467 n n 
C3G C3H PC1 sing 468 n n 
C3G H3G1 PC1 sing 469 n n 
C3G H3G2 PC1 sing 470 n n 
C3H C3I PC1 sing 471 n n 
C3H H3H1 PC1 sing 472 n n 
C3H H3H2 PC1 sing 473 n n 
C3I H3I1 PC1 sing 474 n n 
C3I H3I2 PC1 sing 475 n n 
C3I H3I3 PC1 sing 476 n n 
#
_atom_sites.entry_id                     4IRE 
_atom_sites.fract_transf_matrix[1][1]    0.005494 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001225 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007484 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006347 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 LMD A 1 401 401 LMD LMD . 
G 3 PC1 A 1 402 402 PC1 PC1 . 
H 3 PC1 A 1 403 403 PC1 PC1 . 
I 4 OXL A 1 404 501 OXL OXL . 
J 4 OXL A 1 405 502 OXL OXL . 
K 4 OXL A 1 406 503 OXL OXL . 
L 5 ACT A 1 407 601 ACT ACT . 
M 5 ACT A 1 408 602 ACT ACT . 
N 3 PC1 B 1 401 402 PC1 PC1 . 
O 3 PC1 B 1 402 403 PC1 PC1 . 
P 4 OXL B 1 403 501 OXL OXL . 
Q 4 OXL B 1 404 502 OXL OXL . 
R 5 ACT B 1 405 601 ACT ACT . 
S 5 ACT B 1 406 602 ACT ACT . 
T 2 LMD C 1 401 401 LMD LMD . 
U 2 LMD C 1 402 401 LMD LMD . 
V 3 PC1 C 1 403 402 PC1 PC1 . 
W 3 PC1 C 1 404 403 PC1 PC1 . 
X 4 OXL C 1 405 502 OXL OXL . 
Y 4 OXL C 1 406 503 OXL OXL . 
Z 5 ACT C 1 407 601 ACT ACT . 
AA 5 ACT C 1 408 602 ACT ACT . 
BA 4 OXL D 1 501 501 OXL OXL . 
CA 3 PC1 D 1 502 402 PC1 PC1 . 
DA 3 PC1 D 1 503 403 PC1 PC1 . 
EA 4 OXL D 1 504 502 OXL OXL . 
FA 4 OXL D 1 505 503 OXL OXL . 
GA 4 OXL D 1 506 504 OXL OXL . 
HA 4 OXL D 1 507 505 OXL OXL . 
IA 5 ACT D 1 508 601 ACT ACT . 
JA 5 ACT D 1 509 602 ACT ACT . 
KA 2 LMD E 1 401 404 LMD LMD . 
LA 2 LMD E 1 402 401 LMD LMD . 
MA 4 OXL E 1 403 501 OXL OXL . 
NA 2 LMD E 1 404 401 LMD LMD . 
OA 3 PC1 E 1 405 402 PC1 PC1 . 
PA 3 PC1 E 1 406 403 PC1 PC1 . 
QA 4 OXL E 1 407 501 OXL OXL . 
RA 4 OXL E 1 408 502 OXL OXL . 
SA 4 OXL E 1 409 503 OXL OXL . 
TA 4 OXL E 1 410 504 OXL OXL . 
UA 5 ACT E 1 411 601 ACT ACT . 
VA 5 ACT E 1 412 602 ACT ACT . 
WA 6 HOH A 1 501 2 HOH HOH . 
WA 6 HOH A 2 502 10 HOH HOH . 
WA 6 HOH A 3 503 21 HOH HOH . 
WA 6 HOH A 4 504 43 HOH HOH . 
WA 6 HOH A 5 505 44 HOH HOH . 
XA 6 HOH B 1 501 6 HOH HOH . 
XA 6 HOH B 2 502 9 HOH HOH . 
XA 6 HOH B 3 503 11 HOH HOH . 
XA 6 HOH B 4 504 12 HOH HOH . 
XA 6 HOH B 5 505 13 HOH HOH . 
XA 6 HOH B 6 506 23 HOH HOH . 
XA 6 HOH B 7 507 24 HOH HOH . 
XA 6 HOH B 8 508 36 HOH HOH . 
XA 6 HOH B 9 509 37 HOH HOH . 
XA 6 HOH B 10 510 47 HOH HOH . 
XA 6 HOH B 11 511 49 HOH HOH . 
XA 6 HOH B 12 512 51 HOH HOH . 
YA 6 HOH C 1 501 1 HOH HOH . 
YA 6 HOH C 2 502 3 HOH HOH . 
YA 6 HOH C 3 503 4 HOH HOH . 
YA 6 HOH C 4 504 8 HOH HOH . 
YA 6 HOH C 5 505 14 HOH HOH . 
YA 6 HOH C 6 506 15 HOH HOH . 
YA 6 HOH C 7 507 25 HOH HOH . 
YA 6 HOH C 8 508 27 HOH HOH . 
YA 6 HOH C 9 509 30 HOH HOH . 
YA 6 HOH C 10 510 39 HOH HOH . 
YA 6 HOH C 11 511 40 HOH HOH . 
YA 6 HOH C 12 512 48 HOH HOH . 
ZA 6 HOH D 1 601 16 HOH HOH . 
ZA 6 HOH D 2 602 17 HOH HOH . 
ZA 6 HOH D 3 603 20 HOH HOH . 
ZA 6 HOH D 4 604 28 HOH HOH . 
ZA 6 HOH D 5 605 29 HOH HOH . 
ZA 6 HOH D 6 606 32 HOH HOH . 
ZA 6 HOH D 7 607 35 HOH HOH . 
ZA 6 HOH D 8 608 38 HOH HOH . 
ZA 6 HOH D 9 609 41 HOH HOH . 
ZA 6 HOH D 10 610 42 HOH HOH . 
ZA 6 HOH D 11 611 45 HOH HOH . 
ZA 6 HOH D 12 612 46 HOH HOH . 
AB 6 HOH E 1 501 5 HOH HOH . 
AB 6 HOH E 2 502 7 HOH HOH . 
AB 6 HOH E 3 503 18 HOH HOH . 
AB 6 HOH E 4 504 19 HOH HOH . 
AB 6 HOH E 5 505 22 HOH HOH . 
AB 6 HOH E 6 506 26 HOH HOH . 
AB 6 HOH E 7 507 31 HOH HOH . 
AB 6 HOH E 8 508 33 HOH HOH . 
AB 6 HOH E 9 509 34 HOH HOH . 
AB 6 HOH E 10 510 50 HOH HOH . 
AB 6 HOH E 11 511 52 HOH HOH . 
AB 6 HOH E 12 512 53 HOH HOH . 
AB 6 HOH E 13 513 54 HOH HOH . 
AB 6 HOH E 14 514 55 HOH HOH . 
AB 6 HOH E 15 515 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 PC1 . . . W 3 39.119 -55.664 44.127 1 120.25 ? O12 PC1 404 C 1 
HETATM 2 P P PC1 . . . W 3 38.15 -56.096 45.222 1 182.92 ? P PC1 404 C 1 
HETATM 3 O O14 PC1 . . . W 3 38.848 -56.695 46.427 1 144.85 ? O14 PC1 404 C 1 
HETATM 4 O O13 PC1 . . . W 3 37.144 -57.18 44.69 1 145.96 ? O13 PC1 404 C 1 
HETATM 5 C C11 PC1 . . . W 3 37.8 -58.263 44.138 1 132.5 ? C11 PC1 404 C 1 
HETATM 6 C C12 PC1 . . . W 3 37.882 -58.133 42.65 1 142.43 ? C12 PC1 404 C 1 
HETATM 7 N N PC1 . . . W 3 37.406 -59.317 41.993 1 141.89 ? N PC1 404 C 1 
HETATM 8 C C13 PC1 . . . W 3 37.84 -59.323 40.625 1 115.92 ? C13 PC1 404 C 1 
HETATM 9 C C14 PC1 . . . W 3 35.974 -59.34 42.039 1 115.92 ? C14 PC1 404 C 1 
HETATM 10 C C15 PC1 . . . W 3 37.931 -60.475 42.652 1 137.81 ? C15 PC1 404 C 1 
HETATM 11 O O11 PC1 . . . W 3 37.342 -54.853 45.754 1 183.83 ? O11 PC1 404 C 1 
HETATM 12 C C1 PC1 . . . W 3 37.684 -54.515 47.056 1 145.24 ? C1 PC1 404 C 1 
HETATM 13 C C2 PC1 . . . W 3 37.271 -53.113 47.446 1 143.68 ? C2 PC1 404 C 1 
HETATM 14 O O21 PC1 . . . W 3 36.541 -52.456 46.452 1 157.48 ? O21 PC1 404 C 1 
HETATM 15 C C21 PC1 . . . W 3 37.085 -51.251 46.014 1 129.08 ? C21 PC1 404 C 1 
HETATM 16 O O22 PC1 . . . W 3 37.59 -51.192 44.897 1 114.35 ? O22 PC1 404 C 1 
HETATM 17 C C22 PC1 . . . W 3 36.814 -49.958 46.725 1 108.43 ? C22 PC1 404 C 1 
HETATM 18 C C23 PC1 . . . W 3 35.363 -49.765 47.024 1 101.27 ? C23 PC1 404 C 1 
HETATM 19 C C24 PC1 . . . W 3 35.193 -49.667 48.508 1 135.31 ? C24 PC1 404 C 1 
HETATM 20 C C25 PC1 . . . W 3 36.162 -50.551 49.238 1 102.54 ? C25 PC1 404 C 1 
HETATM 21 C C26 PC1 . . . W 3 36.625 -49.888 50.494 1 71.86 ? C26 PC1 404 C 1 
HETATM 22 C C3 PC1 . . . W 3 38.473 -52.319 47.869 1 129 ? C3 PC1 404 C 1 
HETATM 23 O O31 PC1 . . . W 3 39.188 -52.978 48.846 1 122.75 ? O31 PC1 404 C 1 
HETATM 24 C C31 PC1 . . . W 3 40.183 -52.165 49.359 1 117.71 ? C31 PC1 404 C 1 
HETATM 25 O O32 PC1 . . . W 3 41.35 -52.385 49.057 1 103.85 ? O32 PC1 404 C 1 
HETATM 26 C C32 PC1 . . . W 3 39.872 -51.098 50.368 1 107.93 ? C32 PC1 404 C 1 
HETATM 27 C C33 PC1 . . . W 3 40.94 -51.063 51.414 1 99.75 ? C33 PC1 404 C 1 
HETATM 28 C C34 PC1 . . . W 3 41.38 -49.659 51.667 1 94.98 ? C34 PC1 404 C 1 
HETATM 29 C C35 PC1 . . . W 3 42.84 -49.619 51.985 1 86.27 ? C35 PC1 404 C 1 
HETATM 30 C C36 PC1 . . . W 3 43.032 -49.541 53.467 1 106.92 ? C36 PC1 404 C 1 
HETATM 31 C C37 PC1 . . . W 3 44.373 -50.085 53.852 1 106.5 ? C37 PC1 404 C 1 
HETATM 32 C C38 PC1 . . . W 3 44.596 -49.989 55.327 1 75.36 ? C38 PC1 404 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#