data_4IRM # _model_server_result.job_id C-HO3eC-ne1Yp5y51bxfTg _model_server_result.datetime_utc '2024-12-22 02:44:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4irm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 4IRM # _exptl.entry_id 4IRM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IRM _cell.length_a 128.4 _cell.length_b 128.4 _cell.length_c 90.51 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IRM _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,E 2 1 C,F 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 219 A CYS 219 1_555 A SG CYS 268 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc2 A NE2 HIS 154 A HIS 154 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.761 ? metalc ? metalc3 A OE1 GLU 220 A GLU 220 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.688 ? metalc ? metalc4 A OE2 GLU 220 A GLU 220 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc5 A OD2 ASP 295 A ASP 295 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc6 B NE2 HIS 89 B HIS 89 1_555 E MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc7 B NE2 HIS 154 B HIS 154 1_555 E MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc8 B OE2 GLU 220 B GLU 220 1_555 E MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? metalc ? metalc9 B OE1 GLU 220 B GLU 220 1_555 E MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? metalc ? metalc10 B OD1 ASP 295 B ASP 295 1_555 E MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc11 B OD2 ASP 295 B ASP 295 1_555 E MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc12 C NE2 HIS 89 C HIS 89 1_555 F MN MN . C MN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc13 C NE2 HIS 154 C HIS 154 1_555 F MN MN . C MN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc14 C OE1 GLU 220 C GLU 220 1_555 F MN MN . C MN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc15 C OE2 GLU 220 C GLU 220 1_555 F MN MN . C MN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc16 C OD2 ASP 295 C ASP 295 1_555 F MN MN . C MN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4IRM _atom_sites.fract_transf_matrix[1][1] 0.007788 _atom_sites.fract_transf_matrix[1][2] 0.004496 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011049 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MN A 1 401 401 MN MN . E 2 MN B 1 401 401 MN MN . F 2 MN C 1 900 900 MN MN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 23.708 _atom_site.Cartn_y 3.142 _atom_site.Cartn_z 11.82 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 124.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 92 _model_server_stats.parse_time_ms 131 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #