data_4IRO # _model_server_result.job_id i5AdqGFXQt7btww1lndp6g _model_server_result.datetime_utc '2024-11-26 12:17:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4iro # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":400}' # _entry.id 4IRO # _exptl.entry_id 4IRO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.36 _cell.angle_gamma 90 _cell.entry_id 4IRO _cell.length_a 61.538 _cell.length_b 104.802 _cell.length_c 61.616 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IRO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale2 C C ACE 1 C ACE 0 1_555 C N SER 2 C SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? metalc ? metalc1 A NE2 HIS 89 A HIS 88 1_555 F FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc2 E C CMO . A CMO 201 1_555 F FE HEM . A HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc3 B NE2 HIS 63 B HIS 63 1_555 G FE HEM . B HEM 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 G FE HEM . B HEM 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc5 C NE2 HIS 89 C HIS 88 1_555 H FE HEM . C HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc6 D NE2 HIS 63 D HIS 63 1_555 I FE HEM . D HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc7 D NE2 HIS 92 D HIS 92 1_555 I FE HEM . D HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 136 n n CHA C4D HEM doub 137 n n CHA HHA HEM sing 138 n n CHB C4A HEM sing 139 n n CHB C1B HEM doub 140 n n CHB HHB HEM sing 141 n n CHC C4B HEM sing 142 n n CHC C1C HEM doub 143 n n CHC HHC HEM sing 144 n n CHD C4C HEM doub 145 n n CHD C1D HEM sing 146 n n CHD HHD HEM sing 147 n n C1A C2A HEM doub 148 n y C1A NA HEM sing 149 n y C2A C3A HEM sing 150 n y C2A CAA HEM sing 151 n n C3A C4A HEM doub 152 n y C3A CMA HEM sing 153 n n C4A NA HEM sing 154 n y CMA HMA HEM sing 155 n n CMA HMAA HEM sing 156 n n CMA HMAB HEM sing 157 n n CAA CBA HEM sing 158 n n CAA HAA HEM sing 159 n n CAA HAAA HEM sing 160 n n CBA CGA HEM sing 161 n n CBA HBA HEM sing 162 n n CBA HBAA HEM sing 163 n n CGA O1A HEM doub 164 n n CGA O2A HEM sing 165 n n C1B C2B HEM sing 166 n n C1B NB HEM sing 167 n n C2B C3B HEM doub 168 n n C2B CMB HEM sing 169 n n C3B C4B HEM sing 170 n n C3B CAB HEM sing 171 n n C4B NB HEM doub 172 n n CMB HMB HEM sing 173 n n CMB HMBA HEM sing 174 n n CMB HMBB HEM sing 175 n n CAB CBB HEM doub 176 n n CAB HAB HEM sing 177 n n CBB HBB HEM sing 178 n n CBB HBBA HEM sing 179 n n C1C C2C HEM sing 180 n y C1C NC HEM sing 181 n y C2C C3C HEM doub 182 n y C2C CMC HEM sing 183 n n C3C C4C HEM sing 184 n y C3C CAC HEM sing 185 n n C4C NC HEM sing 186 n y CMC HMC HEM sing 187 n n CMC HMCA HEM sing 188 n n CMC HMCB HEM sing 189 n n CAC CBC HEM doub 190 n n CAC HAC HEM sing 191 n n CBC HBC HEM sing 192 n n CBC HBCA HEM sing 193 n n C1D C2D HEM sing 194 n n C1D ND HEM doub 195 n n C2D C3D HEM doub 196 n n C2D CMD HEM sing 197 n n C3D C4D HEM sing 198 n n C3D CAD HEM sing 199 n n C4D ND HEM sing 200 n n CMD HMD HEM sing 201 n n CMD HMDA HEM sing 202 n n CMD HMDB HEM sing 203 n n CAD CBD HEM sing 204 n n CAD HAD HEM sing 205 n n CAD HADA HEM sing 206 n n CBD CGD HEM sing 207 n n CBD HBD HEM sing 208 n n CBD HBDA HEM sing 209 n n CGD O1D HEM doub 210 n n CGD O2D HEM sing 211 n n O2A H2A HEM sing 212 n n O2D H2D HEM sing 213 n n FE NA HEM sing 214 n n FE NB HEM sing 215 n n FE NC HEM sing 216 n n FE ND HEM sing 217 n n # _atom_sites.entry_id 4IRO _atom_sites.fract_transf_matrix[1][1] 0.01625 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000102 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CMO A 1 201 199 CMO CO . F 4 HEM A 1 202 200 HEM HEM . G 4 HEM B 1 400 400 HEM HEM . H 4 HEM C 1 600 600 HEM HEM . I 4 HEM D 1 800 800 HEM HEM . J 5 HOH A 1 301 1003 HOH WAT . J 5 HOH A 2 302 1010 HOH WAT . J 5 HOH A 3 303 1013 HOH WAT . J 5 HOH A 4 304 1015 HOH WAT . J 5 HOH A 5 305 1017 HOH WAT . J 5 HOH A 6 306 1019 HOH WAT . J 5 HOH A 7 307 1021 HOH WAT . J 5 HOH A 8 308 1022 HOH WAT . J 5 HOH A 9 309 1026 HOH WAT . J 5 HOH A 10 310 1034 HOH WAT . J 5 HOH A 11 311 1036 HOH WAT . J 5 HOH A 12 312 1037 HOH WAT . K 5 HOH B 1 501 1005 HOH WAT . K 5 HOH B 2 502 1009 HOH WAT . K 5 HOH B 3 503 1012 HOH WAT . K 5 HOH B 4 504 1016 HOH WAT . K 5 HOH B 5 505 1028 HOH WAT . K 5 HOH B 6 506 1035 HOH WAT . L 5 HOH C 1 1001 1001 HOH WAT . L 5 HOH C 2 1002 1002 HOH WAT . L 5 HOH C 3 1003 1006 HOH WAT . L 5 HOH C 4 1004 1007 HOH WAT . L 5 HOH C 5 1005 1008 HOH WAT . L 5 HOH C 6 1006 1011 HOH WAT . L 5 HOH C 7 1007 1014 HOH WAT . L 5 HOH C 8 1008 1018 HOH WAT . L 5 HOH C 9 1009 1020 HOH WAT . L 5 HOH C 10 1010 1023 HOH WAT . L 5 HOH C 11 1011 1024 HOH WAT . L 5 HOH C 12 1012 1027 HOH WAT . L 5 HOH C 13 1013 1029 HOH WAT . L 5 HOH C 14 1014 1030 HOH WAT . L 5 HOH C 15 1015 1032 HOH WAT . L 5 HOH C 16 1016 1033 HOH WAT . M 5 HOH D 1 901 1004 HOH WAT . M 5 HOH D 2 902 1025 HOH WAT . M 5 HOH D 3 903 1031 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 4 -6.194 19.799 41.651 1 53.12 ? CHA HEM 400 B 1 HETATM 2 C CHB HEM . . . G 4 -7.103 15.465 43.583 1 53.15 ? CHB HEM 400 B 1 HETATM 3 C CHC HEM . . . G 4 -5.357 13.357 39.605 1 51.89 ? CHC HEM 400 B 1 HETATM 4 C CHD HEM . . . G 4 -5.095 17.678 37.455 1 51.16 ? CHD HEM 400 B 1 HETATM 5 C C1A HEM . . . G 4 -6.651 18.825 42.516 1 53.8 ? C1A HEM 400 B 1 HETATM 6 C C2A HEM . . . G 4 -7.411 19.029 43.724 1 54.6 ? C2A HEM 400 B 1 HETATM 7 C C3A HEM . . . G 4 -7.66 17.817 44.25 1 54.2 ? C3A HEM 400 B 1 HETATM 8 C C4A HEM . . . G 4 -7.057 16.831 43.384 1 53.71 ? C4A HEM 400 B 1 HETATM 9 C CMA HEM . . . G 4 -8.453 17.463 45.524 1 53.97 ? CMA HEM 400 B 1 HETATM 10 C CAA HEM . . . G 4 -7.809 20.395 44.305 1 55.64 ? CAA HEM 400 B 1 HETATM 11 C CBA HEM . . . G 4 -8.414 21.463 43.409 1 56.76 ? CBA HEM 400 B 1 HETATM 12 C CGA HEM . . . G 4 -7.461 22.558 42.975 1 57.57 ? CGA HEM 400 B 1 HETATM 13 O O1A HEM . . . G 4 -6.244 22.383 43.252 1 59.13 ? O1A HEM 400 B 1 HETATM 14 O O2A HEM . . . G 4 -7.957 23.546 42.382 1 57.71 ? O2A HEM 400 B 1 HETATM 15 C C1B HEM . . . G 4 -6.662 14.507 42.695 1 52.55 ? C1B HEM 400 B 1 HETATM 16 C C2B HEM . . . G 4 -6.623 13.08 42.934 1 52.47 ? C2B HEM 400 B 1 HETATM 17 C C3B HEM . . . G 4 -6.104 12.502 41.849 1 52.2 ? C3B HEM 400 B 1 HETATM 18 C C4B HEM . . . G 4 -5.844 13.551 40.881 1 52.06 ? C4B HEM 400 B 1 HETATM 19 C CMB HEM . . . G 4 -7.112 12.425 44.246 1 52.65 ? CMB HEM 400 B 1 HETATM 20 C CAB HEM . . . G 4 -5.868 11.007 41.55 1 52.1 ? CAB HEM 400 B 1 HETATM 21 C CBB HEM . . . G 4 -5.424 10.188 42.506 1 52.26 ? CBB HEM 400 B 1 HETATM 22 C C1C HEM . . . G 4 -5.133 14.348 38.672 1 51.78 ? C1C HEM 400 B 1 HETATM 23 C C2C HEM . . . G 4 -4.556 14.144 37.358 1 51.93 ? C2C HEM 400 B 1 HETATM 24 C C3C HEM . . . G 4 -4.495 15.334 36.757 1 51.93 ? C3C HEM 400 B 1 HETATM 25 C C4C HEM . . . G 4 -5.027 16.319 37.677 1 51.53 ? C4C HEM 400 B 1 HETATM 26 C CMC HEM . . . G 4 -4.136 12.756 36.829 1 51.21 ? CMC HEM 400 B 1 HETATM 27 C CAC HEM . . . G 4 -3.924 15.692 35.371 1 52.18 ? CAC HEM 400 B 1 HETATM 28 C CBC HEM . . . G 4 -2.813 15.1 34.922 1 52.45 ? CBC HEM 400 B 1 HETATM 29 C C1D HEM . . . G 4 -5.36 18.637 38.41 1 51.26 ? C1D HEM 400 B 1 HETATM 30 C C2D HEM . . . G 4 -5.331 20.069 38.195 1 51.35 ? C2D HEM 400 B 1 HETATM 31 C C3D HEM . . . G 4 -5.616 20.662 39.358 1 51.68 ? C3D HEM 400 B 1 HETATM 32 C C4D HEM . . . G 4 -5.918 19.617 40.311 1 52.2 ? C4D HEM 400 B 1 HETATM 33 C CMD HEM . . . G 4 -4.978 20.708 36.836 1 52.2 ? CMD HEM 400 B 1 HETATM 34 C CAD HEM . . . G 4 -5.777 22.166 39.663 1 52.15 ? CAD HEM 400 B 1 HETATM 35 C CBD HEM . . . G 4 -4.883 22.81 40.709 1 52.7 ? CBD HEM 400 B 1 HETATM 36 C CGD HEM . . . G 4 -5.034 24.299 40.89 1 53.45 ? CGD HEM 400 B 1 HETATM 37 O O1D HEM . . . G 4 -4.571 24.804 41.949 1 54.89 ? O1D HEM 400 B 1 HETATM 38 O O2D HEM . . . G 4 -5.613 24.934 39.97 1 53.94 ? O2D HEM 400 B 1 HETATM 39 N NA HEM . . . G 4 -6.445 17.463 42.316 1 53.86 ? NA HEM 400 B 1 HETATM 40 N NB HEM . . . G 4 -6.182 14.776 41.425 1 51.9 ? NB HEM 400 B 1 HETATM 41 N NC HEM . . . G 4 -5.403 15.691 38.852 1 51.65 ? NC HEM 400 B 1 HETATM 42 N ND HEM . . . G 4 -5.699 18.379 39.726 1 51.57 ? ND HEM 400 B 1 HETATM 43 FE FE HEM . . . G 4 -6.086 16.58 40.535 1 48.33 ? FE HEM 400 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #