data_4IRS # _model_server_result.job_id UOjcTd6LOHJV9CyouNB4bA _model_server_result.datetime_utc '2024-11-16 10:04:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4irs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 4IRS # _exptl.entry_id 4IRS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IRS _cell.length_a 78.97 _cell.length_b 191.4 _cell.length_c 151.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IRS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 6 3 1 FUL NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG F 1 NAG 5 n E NAG 2 E 2 NAG G 1 NAG 6 n F NAG 1 F 1 NAG H 1 NAG 6 n F NAG 2 F 2 NAG I 1 NAG 6 n F FUL 3 F 3 FUL J 1 FUL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 C SG CYS 24 C CYS 22 1_555 C SG CYS 91 C CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf5 C SG CYS 138 C CYS 136 1_555 C SG CYS 188 C CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 C SG CYS 163 C CYS 161 1_555 D SG CYS 169 D CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf7 D SG CYS 24 D CYS 23 1_555 D SG CYS 92 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 D SG CYS 143 D CYS 142 1_555 D SG CYS 208 D CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 G C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 F O6 NAG . F NAG 1 1_555 F C1 FUL . F FUL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 433 n n C1 O1 NAG sing 434 n n C1 O5 NAG sing 435 n n C1 H1 NAG sing 436 n n C2 C3 NAG sing 437 n n C2 N2 NAG sing 438 n n C2 H2 NAG sing 439 n n C3 C4 NAG sing 440 n n C3 O3 NAG sing 441 n n C3 H3 NAG sing 442 n n C4 C5 NAG sing 443 n n C4 O4 NAG sing 444 n n C4 H4 NAG sing 445 n n C5 C6 NAG sing 446 n n C5 O5 NAG sing 447 n n C5 H5 NAG sing 448 n n C6 O6 NAG sing 449 n n C6 H61 NAG sing 450 n n C6 H62 NAG sing 451 n n C7 C8 NAG sing 452 n n C7 N2 NAG sing 453 n n C7 O7 NAG doub 454 n n C8 H81 NAG sing 455 n n C8 H82 NAG sing 456 n n C8 H83 NAG sing 457 n n N2 HN2 NAG sing 458 n n O1 HO1 NAG sing 459 n n O3 HO3 NAG sing 460 n n O4 HO4 NAG sing 461 n n O6 HO6 NAG sing 462 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4IRS _atom_sites.fract_transf_matrix[1][1] 0.012663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 NAG A 1 301 1 NAG NAG . H 8 1LA A 1 307 1 1LA 1LA . I 9 HOH A 1 401 6 HOH HOH . I 9 HOH A 2 402 8 HOH HOH . I 9 HOH A 3 403 9 HOH HOH . I 9 HOH A 4 404 14 HOH HOH . I 9 HOH A 5 405 22 HOH HOH . I 9 HOH A 6 406 23 HOH HOH . I 9 HOH A 7 407 24 HOH HOH . I 9 HOH A 8 408 25 HOH HOH . I 9 HOH A 9 409 5 HOH HOH . I 9 HOH A 10 410 17 HOH HOH . I 9 HOH A 11 411 23 HOH HOH . I 9 HOH A 12 412 33 HOH HOH . I 9 HOH A 13 413 35 HOH HOH . I 9 HOH A 14 414 44 HOH HOH . I 9 HOH A 15 415 48 HOH HOH . I 9 HOH A 16 416 50 HOH HOH . I 9 HOH A 17 417 64 HOH HOH . I 9 HOH A 18 418 72 HOH HOH . I 9 HOH A 19 419 96 HOH HOH . I 9 HOH A 20 420 102 HOH HOH . I 9 HOH A 21 421 103 HOH HOH . I 9 HOH A 22 422 106 HOH HOH . I 9 HOH A 23 423 116 HOH HOH . I 9 HOH A 24 424 130 HOH HOH . I 9 HOH A 25 425 160 HOH HOH . I 9 HOH A 26 426 207 HOH HOH . I 9 HOH A 27 427 243 HOH HOH . I 9 HOH A 28 428 268 HOH HOH . I 9 HOH A 29 429 288 HOH HOH . I 9 HOH A 30 430 299 HOH HOH . I 9 HOH A 31 431 304 HOH HOH . I 9 HOH A 32 432 330 HOH HOH . I 9 HOH A 33 433 44 HOH HOH . I 9 HOH A 34 434 46 HOH HOH . I 9 HOH A 35 435 48 HOH HOH . I 9 HOH A 36 436 175 HOH HOH . I 9 HOH A 37 437 188 HOH HOH . I 9 HOH A 38 438 37 HOH HOH . I 9 HOH A 39 439 79 HOH HOH . I 9 HOH A 40 440 241 HOH HOH . I 9 HOH A 41 441 139 HOH HOH . J 9 HOH B 1 101 5 HOH HOH . J 9 HOH B 2 102 10 HOH HOH . J 9 HOH B 3 103 24 HOH HOH . J 9 HOH B 4 104 32 HOH HOH . J 9 HOH B 5 105 57 HOH HOH . J 9 HOH B 6 106 88 HOH HOH . J 9 HOH B 7 107 111 HOH HOH . J 9 HOH B 8 108 241 HOH HOH . J 9 HOH B 9 109 254 HOH HOH . J 9 HOH B 10 110 1 HOH HOH . J 9 HOH B 11 111 9 HOH HOH . J 9 HOH B 12 112 227 HOH HOH . J 9 HOH B 13 113 11 HOH HOH . J 9 HOH B 14 114 75 HOH HOH . K 9 HOH C 1 401 3 HOH HOH . K 9 HOH C 2 402 1 HOH HOH . K 9 HOH C 3 403 2 HOH HOH . K 9 HOH C 4 404 4 HOH HOH . K 9 HOH C 5 405 7 HOH HOH . K 9 HOH C 6 406 11 HOH HOH . K 9 HOH C 7 407 12 HOH HOH . K 9 HOH C 8 408 13 HOH HOH . K 9 HOH C 9 409 18 HOH HOH . K 9 HOH C 10 410 2 HOH HOH . K 9 HOH C 11 411 36 HOH HOH . K 9 HOH C 12 412 47 HOH HOH . K 9 HOH C 13 413 56 HOH HOH . K 9 HOH C 14 414 61 HOH HOH . K 9 HOH C 15 415 65 HOH HOH . K 9 HOH C 16 416 69 HOH HOH . K 9 HOH C 17 417 82 HOH HOH . K 9 HOH C 18 418 136 HOH HOH . K 9 HOH C 19 419 253 HOH HOH . K 9 HOH C 20 420 325 HOH HOH . K 9 HOH C 21 421 19 HOH HOH . K 9 HOH C 22 422 30 HOH HOH . K 9 HOH C 23 423 62 HOH HOH . K 9 HOH C 24 424 91 HOH HOH . K 9 HOH C 25 425 100 HOH HOH . L 9 HOH D 1 301 15 HOH HOH . L 9 HOH D 2 302 16 HOH HOH . L 9 HOH D 3 303 17 HOH HOH . L 9 HOH D 4 304 19 HOH HOH . L 9 HOH D 5 305 20 HOH HOH . L 9 HOH D 6 306 21 HOH HOH . L 9 HOH D 7 307 3 HOH HOH . L 9 HOH D 8 308 6 HOH HOH . L 9 HOH D 9 309 19 HOH HOH . L 9 HOH D 10 310 27 HOH HOH . L 9 HOH D 11 311 38 HOH HOH . L 9 HOH D 12 312 43 HOH HOH . L 9 HOH D 13 313 58 HOH HOH . L 9 HOH D 14 314 63 HOH HOH . L 9 HOH D 15 315 127 HOH HOH . L 9 HOH D 16 316 145 HOH HOH . L 9 HOH D 17 317 161 HOH HOH . L 9 HOH D 18 318 162 HOH HOH . L 9 HOH D 19 319 218 HOH HOH . L 9 HOH D 20 320 222 HOH HOH . L 9 HOH D 21 321 233 HOH HOH . L 9 HOH D 22 322 326 HOH HOH . L 9 HOH D 23 323 38 HOH HOH . L 9 HOH D 24 324 47 HOH HOH . L 9 HOH D 25 325 50 HOH HOH . L 9 HOH D 26 326 133 HOH HOH . L 9 HOH D 27 327 167 HOH HOH . L 9 HOH D 28 328 208 HOH HOH . L 9 HOH D 29 329 12 HOH HOH . L 9 HOH D 30 330 52 HOH HOH . L 9 HOH D 31 331 114 HOH HOH . L 9 HOH D 32 332 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 7 45.554 41.708 -17.641 1 58.28 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . G 7 46.02 43.052 -18.238 1 67.37 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . G 7 47.071 42.916 -19.352 1 68.63 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . G 7 48.12 41.831 -19.084 1 67.27 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . G 7 47.412 40.535 -18.664 1 63.36 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . G 7 48.364 39.336 -18.496 1 58.71 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . G 7 44.315 44.828 -18.02 1 74.21 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . G 7 43.169 45.529 -18.699 1 68.14 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . G 7 44.894 43.842 -18.729 1 69.82 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . G 7 47.734 44.149 -19.504 1 70.6 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . G 7 48.931 41.649 -20.232 1 67.26 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . G 7 46.655 40.803 -17.484 1 60.92 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . G 7 49.133 39.425 -17.318 1 53.56 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . G 7 44.664 45.17 -16.876 1 71.38 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #