data_4ISL # _model_server_result.job_id T4dMHeeQshYi87-Fkg3FLw _model_server_result.datetime_utc '2024-11-26 19:47:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4isl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":304}' # _entry.id 4ISL # _exptl.entry_id 4ISL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ISL _cell.length_a 61.934 _cell.length_b 61.934 _cell.length_c 178.997 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ISL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 B CYS 250 1_555 A SG CYS 56 B CYS 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 15 B CYS 259 1_555 A SG CYS 39 B CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 31 B CYS 275 1_555 A SG CYS 52 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 B SG CYS 27 A CYS 42 1_555 B SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf5 B SG CYS 162 A CYS 168 1_555 B SG CYS 176 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf6 B SG CYS 187 A CYS 191 1_555 B SG CYS 216 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4ISL _atom_sites.fract_transf_matrix[1][1] 0.016146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005587 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PG4 B 1 401 1 PG4 PG4 . D 4 GOL A 1 301 1 GOL GOL . E 4 GOL A 1 302 1 GOL GOL . F 5 PGE A 1 303 1 PGE PGE . G 4 GOL A 1 304 1 GOL GOL . H 6 GSH A 1 305 1 GSH GSH . I 7 HOH B 1 501 2 HOH HOH . I 7 HOH B 2 502 3 HOH HOH . I 7 HOH B 3 503 9 HOH HOH . I 7 HOH B 4 504 11 HOH HOH . I 7 HOH B 5 505 18 HOH HOH . I 7 HOH B 6 506 22 HOH HOH . I 7 HOH B 7 507 23 HOH HOH . I 7 HOH B 8 508 26 HOH HOH . I 7 HOH B 9 509 35 HOH HOH . I 7 HOH B 10 510 42 HOH HOH . I 7 HOH B 11 511 44 HOH HOH . I 7 HOH B 12 512 48 HOH HOH . I 7 HOH B 13 513 50 HOH HOH . I 7 HOH B 14 514 62 HOH HOH . I 7 HOH B 15 515 71 HOH HOH . I 7 HOH B 16 516 79 HOH HOH . I 7 HOH B 17 517 88 HOH HOH . I 7 HOH B 18 518 93 HOH HOH . I 7 HOH B 19 519 94 HOH HOH . I 7 HOH B 20 520 97 HOH HOH . I 7 HOH B 21 521 99 HOH HOH . I 7 HOH B 22 522 103 HOH HOH . I 7 HOH B 23 523 104 HOH HOH . I 7 HOH B 24 524 106 HOH HOH . I 7 HOH B 25 525 109 HOH HOH . I 7 HOH B 26 526 110 HOH HOH . I 7 HOH B 27 527 113 HOH HOH . I 7 HOH B 28 528 125 HOH HOH . I 7 HOH B 29 529 128 HOH HOH . I 7 HOH B 30 530 131 HOH HOH . I 7 HOH B 31 531 132 HOH HOH . I 7 HOH B 32 532 135 HOH HOH . I 7 HOH B 33 533 136 HOH HOH . I 7 HOH B 34 534 137 HOH HOH . I 7 HOH B 35 535 151 HOH HOH . I 7 HOH B 36 536 156 HOH HOH . I 7 HOH B 37 537 157 HOH HOH . I 7 HOH B 38 538 158 HOH HOH . I 7 HOH B 39 539 168 HOH HOH . J 7 HOH A 1 401 1 HOH HOH . J 7 HOH A 2 402 4 HOH HOH . J 7 HOH A 3 403 5 HOH HOH . J 7 HOH A 4 404 6 HOH HOH . J 7 HOH A 5 405 7 HOH HOH . J 7 HOH A 6 406 8 HOH HOH . J 7 HOH A 7 407 10 HOH HOH . J 7 HOH A 8 408 12 HOH HOH . J 7 HOH A 9 409 13 HOH HOH . J 7 HOH A 10 410 14 HOH HOH . J 7 HOH A 11 411 15 HOH HOH . J 7 HOH A 12 412 16 HOH HOH . J 7 HOH A 13 413 17 HOH HOH . J 7 HOH A 14 414 19 HOH HOH . J 7 HOH A 15 415 20 HOH HOH . J 7 HOH A 16 416 21 HOH HOH . J 7 HOH A 17 417 24 HOH HOH . J 7 HOH A 18 418 25 HOH HOH . J 7 HOH A 19 419 27 HOH HOH . J 7 HOH A 20 420 28 HOH HOH . J 7 HOH A 21 421 29 HOH HOH . J 7 HOH A 22 422 30 HOH HOH . J 7 HOH A 23 423 31 HOH HOH . J 7 HOH A 24 424 32 HOH HOH . J 7 HOH A 25 425 33 HOH HOH . J 7 HOH A 26 426 34 HOH HOH . J 7 HOH A 27 427 36 HOH HOH . J 7 HOH A 28 428 37 HOH HOH . J 7 HOH A 29 429 38 HOH HOH . J 7 HOH A 30 430 39 HOH HOH . J 7 HOH A 31 431 40 HOH HOH . J 7 HOH A 32 432 41 HOH HOH . J 7 HOH A 33 433 43 HOH HOH . J 7 HOH A 34 434 45 HOH HOH . J 7 HOH A 35 435 46 HOH HOH . J 7 HOH A 36 436 47 HOH HOH . J 7 HOH A 37 437 49 HOH HOH . J 7 HOH A 38 438 51 HOH HOH . J 7 HOH A 39 439 52 HOH HOH . J 7 HOH A 40 440 53 HOH HOH . J 7 HOH A 41 441 54 HOH HOH . J 7 HOH A 42 442 55 HOH HOH . J 7 HOH A 43 443 56 HOH HOH . J 7 HOH A 44 444 57 HOH HOH . J 7 HOH A 45 445 58 HOH HOH . J 7 HOH A 46 446 59 HOH HOH . J 7 HOH A 47 447 60 HOH HOH . J 7 HOH A 48 448 61 HOH HOH . J 7 HOH A 49 449 63 HOH HOH . J 7 HOH A 50 450 64 HOH HOH . J 7 HOH A 51 451 65 HOH HOH . J 7 HOH A 52 452 66 HOH HOH . J 7 HOH A 53 453 67 HOH HOH . J 7 HOH A 54 454 68 HOH HOH . J 7 HOH A 55 455 69 HOH HOH . J 7 HOH A 56 456 70 HOH HOH . J 7 HOH A 57 457 72 HOH HOH . J 7 HOH A 58 458 73 HOH HOH . J 7 HOH A 59 459 74 HOH HOH . J 7 HOH A 60 460 75 HOH HOH . J 7 HOH A 61 461 76 HOH HOH . J 7 HOH A 62 462 77 HOH HOH . J 7 HOH A 63 463 78 HOH HOH . J 7 HOH A 64 464 80 HOH HOH . J 7 HOH A 65 465 81 HOH HOH . J 7 HOH A 66 466 82 HOH HOH . J 7 HOH A 67 467 83 HOH HOH . J 7 HOH A 68 468 84 HOH HOH . J 7 HOH A 69 469 85 HOH HOH . J 7 HOH A 70 470 86 HOH HOH . J 7 HOH A 71 471 87 HOH HOH . J 7 HOH A 72 472 89 HOH HOH . J 7 HOH A 73 473 90 HOH HOH . J 7 HOH A 74 474 91 HOH HOH . J 7 HOH A 75 475 92 HOH HOH . J 7 HOH A 76 476 95 HOH HOH . J 7 HOH A 77 477 96 HOH HOH . J 7 HOH A 78 478 98 HOH HOH . J 7 HOH A 79 479 100 HOH HOH . J 7 HOH A 80 480 101 HOH HOH . J 7 HOH A 81 481 102 HOH HOH . J 7 HOH A 82 482 105 HOH HOH . J 7 HOH A 83 483 107 HOH HOH . J 7 HOH A 84 484 108 HOH HOH . J 7 HOH A 85 485 111 HOH HOH . J 7 HOH A 86 486 112 HOH HOH . J 7 HOH A 87 487 114 HOH HOH . J 7 HOH A 88 488 115 HOH HOH . J 7 HOH A 89 489 116 HOH HOH . J 7 HOH A 90 490 117 HOH HOH . J 7 HOH A 91 491 118 HOH HOH . J 7 HOH A 92 492 119 HOH HOH . J 7 HOH A 93 493 120 HOH HOH . J 7 HOH A 94 494 121 HOH HOH . J 7 HOH A 95 495 122 HOH HOH . J 7 HOH A 96 496 123 HOH HOH . J 7 HOH A 97 497 124 HOH HOH . J 7 HOH A 98 498 126 HOH HOH . J 7 HOH A 99 499 129 HOH HOH . J 7 HOH A 100 500 130 HOH HOH . J 7 HOH A 101 501 133 HOH HOH . J 7 HOH A 102 502 134 HOH HOH . J 7 HOH A 103 503 138 HOH HOH . J 7 HOH A 104 504 139 HOH HOH . J 7 HOH A 105 505 140 HOH HOH . J 7 HOH A 106 506 141 HOH HOH . J 7 HOH A 107 507 142 HOH HOH . J 7 HOH A 108 508 143 HOH HOH . J 7 HOH A 109 509 144 HOH HOH . J 7 HOH A 110 510 145 HOH HOH . J 7 HOH A 111 511 146 HOH HOH . J 7 HOH A 112 512 147 HOH HOH . J 7 HOH A 113 513 148 HOH HOH . J 7 HOH A 114 514 149 HOH HOH . J 7 HOH A 115 515 152 HOH HOH . J 7 HOH A 116 516 153 HOH HOH . J 7 HOH A 117 517 154 HOH HOH . J 7 HOH A 118 518 155 HOH HOH . J 7 HOH A 119 519 159 HOH HOH . J 7 HOH A 120 520 160 HOH HOH . J 7 HOH A 121 521 161 HOH HOH . J 7 HOH A 122 522 162 HOH HOH . J 7 HOH A 123 523 163 HOH HOH . J 7 HOH A 124 524 164 HOH HOH . J 7 HOH A 125 525 165 HOH HOH . J 7 HOH A 126 526 166 HOH HOH . J 7 HOH A 127 527 167 HOH HOH . J 7 HOH A 128 528 169 HOH HOH . J 7 HOH A 129 529 170 HOH HOH . J 7 HOH A 130 530 171 HOH HOH . J 7 HOH A 131 531 172 HOH HOH . J 7 HOH A 132 532 173 HOH HOH . J 7 HOH A 133 533 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 19.559 17.564 15.331 1 53.88 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . G 4 20.593 18.041 16.167 1 53.75 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . G 4 19.8 16.09 15.001 1 53.76 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . G 4 19.2 15.771 13.764 1 53.63 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . G 4 19.288 15.148 16.092 1 53.43 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . G 4 18.387 15.791 16.971 1 53.47 ? O3 GOL 304 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #