data_4ISW
#
_model_server_result.job_id            UqDIidS3_ra8Iy2Ty5jTKg 
_model_server_result.datetime_utc      '2024-12-05 04:11:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4isw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    4ISW 
#
_exptl.entry_id    4ISW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.182 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4ISW 
_cell.length_a            133.436 
_cell.length_b            133.436 
_cell.length_c            153.969 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ISW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 126 A THR 126 1_555 A N SEP 127 A SEP 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C SEP 127 A SEP 127 1_555 A N ARG 128 A ARG 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 B C THR 126 B THR 126 1_555 B N SEP 127 B SEP 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C SEP 127 B SEP 127 1_555 B N ARG 128 B ARG 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C9 H13 N2 O8 P' 
_chem_comp.formula_weight    308.182 
_chem_comp.id                UMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DUMP 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UMP sing 376 n n 
N1 C6 UMP sing 377 n n 
N1 C1' UMP sing 378 n n 
C2 N3 UMP sing 379 n n 
C2 O2 UMP doub 380 n n 
N3 C4 UMP sing 381 n n 
N3 HN3 UMP sing 382 n n 
C4 C5 UMP sing 383 n n 
C4 O4 UMP doub 384 n n 
C5 C6 UMP doub 385 n n 
C5 H5 UMP sing 386 n n 
C6 H6 UMP sing 387 n n 
C1' C2' UMP sing 388 n n 
C1' O4' UMP sing 389 n n 
C1' H1' UMP sing 390 n n 
C2' C3' UMP sing 391 n n 
C2' H2' UMP sing 392 n n 
C2' "H2''" UMP sing 393 n n 
C3' C4' UMP sing 394 n n 
C3' O3' UMP sing 395 n n 
C3' H3' UMP sing 396 n n 
C4' O4' UMP sing 397 n n 
C4' C5' UMP sing 398 n n 
C4' H4' UMP sing 399 n n 
O3' HO3' UMP sing 400 n n 
C5' O5' UMP sing 401 n n 
C5' H5' UMP sing 402 n n 
C5' "H5''" UMP sing 403 n n 
O5' P UMP sing 404 n n 
P OP1 UMP doub 405 n n 
P OP2 UMP sing 406 n n 
P OP3 UMP sing 407 n n 
OP2 HOP2 UMP sing 408 n n 
OP3 HOP3 UMP sing 409 n n 
#
_atom_sites.entry_id                     4ISW 
_atom_sites.fract_transf_matrix[1][1]    0.007494 
_atom_sites.fract_transf_matrix[1][2]    0.004327 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008654 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006495 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UMP A 1 401 1 UMP UMP . 
D 2 UMP B 1 401 1 UMP UMP . 
E 3 HOH A 1 501 2 HOH HOH . 
E 3 HOH A 2 502 7 HOH HOH . 
E 3 HOH A 3 503 8 HOH HOH . 
E 3 HOH A 4 504 9 HOH HOH . 
E 3 HOH A 5 505 10 HOH HOH . 
E 3 HOH A 6 506 14 HOH HOH . 
E 3 HOH A 7 507 16 HOH HOH . 
E 3 HOH A 8 508 20 HOH HOH . 
E 3 HOH A 9 509 21 HOH HOH . 
E 3 HOH A 10 510 23 HOH HOH . 
E 3 HOH A 11 511 24 HOH HOH . 
E 3 HOH A 12 512 25 HOH HOH . 
E 3 HOH A 13 513 26 HOH HOH . 
E 3 HOH A 14 514 27 HOH HOH . 
E 3 HOH A 15 515 28 HOH HOH . 
E 3 HOH A 16 516 29 HOH HOH . 
E 3 HOH A 17 517 30 HOH HOH . 
E 3 HOH A 18 518 32 HOH HOH . 
E 3 HOH A 19 519 33 HOH HOH . 
E 3 HOH A 20 520 36 HOH HOH . 
E 3 HOH A 21 521 37 HOH HOH . 
E 3 HOH A 22 522 38 HOH HOH . 
E 3 HOH A 23 523 41 HOH HOH . 
E 3 HOH A 24 524 42 HOH HOH . 
E 3 HOH A 25 525 43 HOH HOH . 
E 3 HOH A 26 526 44 HOH HOH . 
E 3 HOH A 27 527 48 HOH HOH . 
E 3 HOH A 28 528 49 HOH HOH . 
E 3 HOH A 29 529 52 HOH HOH . 
E 3 HOH A 30 530 53 HOH HOH . 
E 3 HOH A 31 531 54 HOH HOH . 
E 3 HOH A 32 532 55 HOH HOH . 
E 3 HOH A 33 533 56 HOH HOH . 
E 3 HOH A 34 534 59 HOH HOH . 
E 3 HOH A 35 535 63 HOH HOH . 
E 3 HOH A 36 536 65 HOH HOH . 
E 3 HOH A 37 537 66 HOH HOH . 
E 3 HOH A 38 538 67 HOH HOH . 
E 3 HOH A 39 539 69 HOH HOH . 
E 3 HOH A 40 540 70 HOH HOH . 
E 3 HOH A 41 541 71 HOH HOH . 
F 3 HOH B 1 501 1 HOH HOH . 
F 3 HOH B 2 502 3 HOH HOH . 
F 3 HOH B 3 503 4 HOH HOH . 
F 3 HOH B 4 504 5 HOH HOH . 
F 3 HOH B 5 505 6 HOH HOH . 
F 3 HOH B 6 506 11 HOH HOH . 
F 3 HOH B 7 507 12 HOH HOH . 
F 3 HOH B 8 508 13 HOH HOH . 
F 3 HOH B 9 509 15 HOH HOH . 
F 3 HOH B 10 510 17 HOH HOH . 
F 3 HOH B 11 511 18 HOH HOH . 
F 3 HOH B 12 512 19 HOH HOH . 
F 3 HOH B 13 513 22 HOH HOH . 
F 3 HOH B 14 514 31 HOH HOH . 
F 3 HOH B 15 515 34 HOH HOH . 
F 3 HOH B 16 516 35 HOH HOH . 
F 3 HOH B 17 517 39 HOH HOH . 
F 3 HOH B 18 518 40 HOH HOH . 
F 3 HOH B 19 519 45 HOH HOH . 
F 3 HOH B 20 520 46 HOH HOH . 
F 3 HOH B 21 521 47 HOH HOH . 
F 3 HOH B 22 522 50 HOH HOH . 
F 3 HOH B 23 523 51 HOH HOH . 
F 3 HOH B 24 524 57 HOH HOH . 
F 3 HOH B 25 525 58 HOH HOH . 
F 3 HOH B 26 526 60 HOH HOH . 
F 3 HOH B 27 527 61 HOH HOH . 
F 3 HOH B 28 528 62 HOH HOH . 
F 3 HOH B 29 529 64 HOH HOH . 
F 3 HOH B 30 530 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UMP . . . C 2 62.507 -12.256 -22.219 1 82.38 ? N1 UMP 401 A 1 
HETATM 2 C C2 UMP . . . C 2 62.423 -11.648 -23.511 1 82.38 ? C2 UMP 401 A 1 
HETATM 3 N N3 UMP . . . C 2 63.533 -11.515 -24.264 1 81.61 ? N3 UMP 401 A 1 
HETATM 4 C C4 UMP . . . C 2 64.735 -11.929 -23.831 1 80.35 ? C4 UMP 401 A 1 
HETATM 5 C C5 UMP . . . C 2 64.852 -12.519 -22.575 1 81.53 ? C5 UMP 401 A 1 
HETATM 6 C C6 UMP . . . C 2 63.715 -12.667 -21.783 1 82.08 ? C6 UMP 401 A 1 
HETATM 7 O O2 UMP . . . C 2 61.335 -11.235 -23.981 1 80.53 ? O2 UMP 401 A 1 
HETATM 8 O O4 UMP . . . C 2 65.747 -11.791 -24.555 1 79 ? O4 UMP 401 A 1 
HETATM 9 C C1' UMP . . . C 2 61.344 -12.437 -21.316 1 78.78 ? C1' UMP 401 A 1 
HETATM 10 C C2' UMP . . . C 2 60.007 -12.652 -22.021 1 74.98 ? C2' UMP 401 A 1 
HETATM 11 C C3' UMP . . . C 2 59.321 -13.758 -21.245 1 73.56 ? C3' UMP 401 A 1 
HETATM 12 C C4' UMP . . . C 2 60.419 -14.451 -20.459 1 74.57 ? C4' UMP 401 A 1 
HETATM 13 O O3' UMP . . . C 2 58.374 -13.181 -20.341 1 71.24 ? O3' UMP 401 A 1 
HETATM 14 O O4' UMP . . . C 2 61.547 -13.574 -20.461 1 77.5 ? O4' UMP 401 A 1 
HETATM 15 C C5' UMP . . . C 2 60.811 -15.769 -21.113 1 72.08 ? C5' UMP 401 A 1 
HETATM 16 O O5' UMP . . . C 2 60.125 -16.857 -20.496 1 68.22 ? O5' UMP 401 A 1 
HETATM 17 P P UMP . . . C 2 60.741 -18.336 -20.615 1 67.48 ? P UMP 401 A 1 
HETATM 18 O OP1 UMP . . . C 2 59.674 -19.229 -20.03 1 69.37 ? OP1 UMP 401 A 1 
HETATM 19 O OP2 UMP . . . C 2 60.959 -18.516 -22.093 1 66.58 ? OP2 UMP 401 A 1 
HETATM 20 O OP3 UMP . . . C 2 62.021 -18.271 -19.814 1 68.92 ? OP3 UMP 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           20 
#