data_4ISW # _model_server_result.job_id '_IdmPdOVPOFZkz4ZDGjDtg' _model_server_result.datetime_utc '2024-10-10 11:17:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4isw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4ISW # _exptl.entry_id 4ISW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ISW _cell.length_a 133.436 _cell.length_b 133.436 _cell.length_c 153.969 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ISW _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 126 A THR 126 1_555 A N SEP 127 A SEP 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C SEP 127 A SEP 127 1_555 A N ARG 128 A ARG 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C THR 126 B THR 126 1_555 B N SEP 127 B SEP 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C SEP 127 B SEP 127 1_555 B N ARG 128 B ARG 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C9 H13 N2 O8 P' _chem_comp.formula_weight 308.182 _chem_comp.id UMP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYURIDINE 5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DUMP # _atom_sites.entry_id 4ISW _atom_sites.fract_transf_matrix[1][1] 0.007494 _atom_sites.fract_transf_matrix[1][2] 0.004327 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UMP A 1 401 1 UMP UMP . D 2 UMP B 1 401 1 UMP UMP . E 3 HOH A 1 501 2 HOH HOH . E 3 HOH A 2 502 7 HOH HOH . E 3 HOH A 3 503 8 HOH HOH . E 3 HOH A 4 504 9 HOH HOH . E 3 HOH A 5 505 10 HOH HOH . E 3 HOH A 6 506 14 HOH HOH . E 3 HOH A 7 507 16 HOH HOH . E 3 HOH A 8 508 20 HOH HOH . E 3 HOH A 9 509 21 HOH HOH . E 3 HOH A 10 510 23 HOH HOH . E 3 HOH A 11 511 24 HOH HOH . E 3 HOH A 12 512 25 HOH HOH . E 3 HOH A 13 513 26 HOH HOH . E 3 HOH A 14 514 27 HOH HOH . E 3 HOH A 15 515 28 HOH HOH . E 3 HOH A 16 516 29 HOH HOH . E 3 HOH A 17 517 30 HOH HOH . E 3 HOH A 18 518 32 HOH HOH . E 3 HOH A 19 519 33 HOH HOH . E 3 HOH A 20 520 36 HOH HOH . E 3 HOH A 21 521 37 HOH HOH . E 3 HOH A 22 522 38 HOH HOH . E 3 HOH A 23 523 41 HOH HOH . E 3 HOH A 24 524 42 HOH HOH . E 3 HOH A 25 525 43 HOH HOH . E 3 HOH A 26 526 44 HOH HOH . E 3 HOH A 27 527 48 HOH HOH . E 3 HOH A 28 528 49 HOH HOH . E 3 HOH A 29 529 52 HOH HOH . E 3 HOH A 30 530 53 HOH HOH . E 3 HOH A 31 531 54 HOH HOH . E 3 HOH A 32 532 55 HOH HOH . E 3 HOH A 33 533 56 HOH HOH . E 3 HOH A 34 534 59 HOH HOH . E 3 HOH A 35 535 63 HOH HOH . E 3 HOH A 36 536 65 HOH HOH . E 3 HOH A 37 537 66 HOH HOH . E 3 HOH A 38 538 67 HOH HOH . E 3 HOH A 39 539 69 HOH HOH . E 3 HOH A 40 540 70 HOH HOH . E 3 HOH A 41 541 71 HOH HOH . F 3 HOH B 1 501 1 HOH HOH . F 3 HOH B 2 502 3 HOH HOH . F 3 HOH B 3 503 4 HOH HOH . F 3 HOH B 4 504 5 HOH HOH . F 3 HOH B 5 505 6 HOH HOH . F 3 HOH B 6 506 11 HOH HOH . F 3 HOH B 7 507 12 HOH HOH . F 3 HOH B 8 508 13 HOH HOH . F 3 HOH B 9 509 15 HOH HOH . F 3 HOH B 10 510 17 HOH HOH . F 3 HOH B 11 511 18 HOH HOH . F 3 HOH B 12 512 19 HOH HOH . F 3 HOH B 13 513 22 HOH HOH . F 3 HOH B 14 514 31 HOH HOH . F 3 HOH B 15 515 34 HOH HOH . F 3 HOH B 16 516 35 HOH HOH . F 3 HOH B 17 517 39 HOH HOH . F 3 HOH B 18 518 40 HOH HOH . F 3 HOH B 19 519 45 HOH HOH . F 3 HOH B 20 520 46 HOH HOH . F 3 HOH B 21 521 47 HOH HOH . F 3 HOH B 22 522 50 HOH HOH . F 3 HOH B 23 523 51 HOH HOH . F 3 HOH B 24 524 57 HOH HOH . F 3 HOH B 25 525 58 HOH HOH . F 3 HOH B 26 526 60 HOH HOH . F 3 HOH B 27 527 61 HOH HOH . F 3 HOH B 28 528 62 HOH HOH . F 3 HOH B 29 529 64 HOH HOH . F 3 HOH B 30 530 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UMP . . . D 2 62.089 -25.621 -51.258 1 76.3 ? N1 UMP 401 B 1 HETATM 2 C C2 UMP . . . D 2 60.99 -25.266 -50.42 1 76.67 ? C2 UMP 401 B 1 HETATM 3 N N3 UMP . . . D 2 60.678 -26.033 -49.359 1 77.35 ? N3 UMP 401 B 1 HETATM 4 C C4 UMP . . . D 2 61.375 -27.143 -49.068 1 78.58 ? C4 UMP 401 B 1 HETATM 5 C C5 UMP . . . D 2 62.449 -27.521 -49.87 1 77.88 ? C5 UMP 401 B 1 HETATM 6 C C6 UMP . . . D 2 62.784 -26.737 -50.971 1 76.61 ? C6 UMP 401 B 1 HETATM 7 O O2 UMP . . . D 2 60.298 -24.244 -50.636 1 76.44 ? O2 UMP 401 B 1 HETATM 8 O O4 UMP . . . D 2 61.066 -27.836 -48.071 1 79.98 ? O4 UMP 401 B 1 HETATM 9 C C1' UMP . . . D 2 62.489 -24.845 -52.455 1 74.34 ? C1' UMP 401 B 1 HETATM 10 C C2' UMP . . . D 2 62.403 -23.325 -52.305 1 69.92 ? C2' UMP 401 B 1 HETATM 11 C C3' UMP . . . D 2 63.661 -22.804 -52.97 1 67.94 ? C3' UMP 401 B 1 HETATM 12 C C4' UMP . . . D 2 64.643 -23.959 -52.912 1 69.08 ? C4' UMP 401 B 1 HETATM 13 O O3' UMP . . . D 2 63.382 -22.503 -54.339 1 64.41 ? O3' UMP 401 B 1 HETATM 14 O O4' UMP . . . D 2 63.85 -25.145 -52.815 1 73.99 ? O4' UMP 401 B 1 HETATM 15 C C5' UMP . . . D 2 65.559 -23.866 -51.698 1 65.06 ? C5' UMP 401 B 1 HETATM 16 O O5' UMP . . . D 2 66.919 -23.933 -52.109 1 61.78 ? O5' UMP 401 B 1 HETATM 17 P P UMP . . . D 2 68.036 -23.182 -51.233 1 61.7 ? P UMP 401 B 1 HETATM 18 O OP1 UMP . . . D 2 67.813 -23.716 -49.842 1 61.7 ? OP1 UMP 401 B 1 HETATM 19 O OP2 UMP . . . D 2 67.683 -21.73 -51.412 1 63.56 ? OP2 UMP 401 B 1 HETATM 20 O OP3 UMP . . . D 2 69.365 -23.564 -51.837 1 61.97 ? OP3 UMP 401 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #