data_4ITC # _model_server_result.job_id ClXOvpU5E-dfPeHUFpSF3A _model_server_result.datetime_utc '2024-11-14 05:33:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4itc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1205}' # _entry.id 4ITC # _exptl.entry_id 4ITC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.96 _cell.angle_gamma 90 _cell.entry_id 4ITC _cell.length_a 34.034 _cell.length_b 33.321 _cell.length_c 67.245 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ITC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 7 A SER 988 1_555 C CA CA . A CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc2 A OE2 GLU 9 A GLU 990 1_555 C CA CA . A CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc3 A OD1 ASP 20 A ASP 1001 1_555 B CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 A OD1 ASP 22 A ASP 1003 1_555 B CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc5 A OD2 ASP 22 A ASP 1003 1_555 B CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc6 A OD1 ASP 24 A ASP 1005 1_555 B CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc7 A O HIS 26 A HIS 1007 1_555 B CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc8 A OG SER 41 A SER 1022 1_555 C CA CA . A CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc9 A O GLY 43 A GLY 1024 1_555 C CA CA . A CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc10 A OD1 ASN 62 A ASN 1043 1_555 B CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc11 A OD1 ASP 165 A ASP 1146 1_555 C CA CA . A CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc12 A OD2 ASP 165 A ASP 1146 1_555 C CA CA . A CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc13 A OE1 GLU 166 A GLU 1147 1_555 C CA CA . A CA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc14 B CA CA . A CA 1201 1_555 I O HOH . A HOH 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 137 n n C1 C2 GOL sing 138 n n C1 H11 GOL sing 139 n n C1 H12 GOL sing 140 n n O1 HO1 GOL sing 141 n n C2 O2 GOL sing 142 n n C2 C3 GOL sing 143 n n C2 H2 GOL sing 144 n n O2 HO2 GOL sing 145 n n C3 O3 GOL sing 146 n n C3 H31 GOL sing 147 n n C3 H32 GOL sing 148 n n O3 HO3 GOL sing 149 n n # _atom_sites.entry_id 4ITC _atom_sites.fract_transf_matrix[1][1] 0.029382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002034 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014907 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1201 1155 CA CA . C 2 CA A 1 1202 1156 CA CA . D 3 GAI A 1 1203 1304 GAI GAI . E 3 GAI A 1 1204 1305 GAI GAI . F 4 GOL A 1 1205 1306 GOL GOL . G 3 GAI A 1 1206 1307 GAI GAI . H 4 GOL A 1 1207 1308 GOL GOL . I 5 HOH A 1 1301 1157 HOH HOH . I 5 HOH A 2 1302 1158 HOH HOH . I 5 HOH A 3 1303 1159 HOH HOH . I 5 HOH A 4 1304 1161 HOH HOH . I 5 HOH A 5 1305 1162 HOH HOH . I 5 HOH A 6 1306 1164 HOH HOH . I 5 HOH A 7 1307 1165 HOH HOH . I 5 HOH A 8 1308 1167 HOH HOH . I 5 HOH A 9 1309 1168 HOH HOH . I 5 HOH A 10 1310 1169 HOH HOH . I 5 HOH A 11 1311 1170 HOH HOH . I 5 HOH A 12 1312 1171 HOH HOH . I 5 HOH A 13 1313 1172 HOH HOH . I 5 HOH A 14 1314 1173 HOH HOH . I 5 HOH A 15 1315 1174 HOH HOH . I 5 HOH A 16 1316 1175 HOH HOH . I 5 HOH A 17 1317 1176 HOH HOH . I 5 HOH A 18 1318 1177 HOH HOH . I 5 HOH A 19 1319 1178 HOH HOH . I 5 HOH A 20 1320 1179 HOH HOH . I 5 HOH A 21 1321 1181 HOH HOH . I 5 HOH A 22 1322 1182 HOH HOH . I 5 HOH A 23 1323 1183 HOH HOH . I 5 HOH A 24 1324 1184 HOH HOH . I 5 HOH A 25 1325 1185 HOH HOH . I 5 HOH A 26 1326 1186 HOH HOH . I 5 HOH A 27 1327 1188 HOH HOH . I 5 HOH A 28 1328 1189 HOH HOH . I 5 HOH A 29 1329 1190 HOH HOH . I 5 HOH A 30 1330 1191 HOH HOH . I 5 HOH A 31 1331 1192 HOH HOH . I 5 HOH A 32 1332 1193 HOH HOH . I 5 HOH A 33 1333 1194 HOH HOH . I 5 HOH A 34 1334 1195 HOH HOH . I 5 HOH A 35 1335 1198 HOH HOH . I 5 HOH A 36 1336 1200 HOH HOH . I 5 HOH A 37 1337 1201 HOH HOH . I 5 HOH A 38 1338 1202 HOH HOH . I 5 HOH A 39 1339 1203 HOH HOH . I 5 HOH A 40 1340 1204 HOH HOH . I 5 HOH A 41 1341 1205 HOH HOH . I 5 HOH A 42 1342 1206 HOH HOH . I 5 HOH A 43 1343 1207 HOH HOH . I 5 HOH A 44 1344 1208 HOH HOH . I 5 HOH A 45 1345 1212 HOH HOH . I 5 HOH A 46 1346 1213 HOH HOH . I 5 HOH A 47 1347 1214 HOH HOH . I 5 HOH A 48 1348 1215 HOH HOH . I 5 HOH A 49 1349 1216 HOH HOH . I 5 HOH A 50 1350 1217 HOH HOH . I 5 HOH A 51 1351 1219 HOH HOH . I 5 HOH A 52 1352 1220 HOH HOH . I 5 HOH A 53 1353 1221 HOH HOH . I 5 HOH A 54 1354 1222 HOH HOH . I 5 HOH A 55 1355 1223 HOH HOH . I 5 HOH A 56 1356 1224 HOH HOH . I 5 HOH A 57 1357 1225 HOH HOH . I 5 HOH A 58 1358 1226 HOH HOH . I 5 HOH A 59 1359 1227 HOH HOH . I 5 HOH A 60 1360 1228 HOH HOH . I 5 HOH A 61 1361 1229 HOH HOH . I 5 HOH A 62 1362 1230 HOH HOH . I 5 HOH A 63 1363 1231 HOH HOH . I 5 HOH A 64 1364 1232 HOH HOH . I 5 HOH A 65 1365 1233 HOH HOH . I 5 HOH A 66 1366 1234 HOH HOH . I 5 HOH A 67 1367 1236 HOH HOH . I 5 HOH A 68 1368 1238 HOH HOH . I 5 HOH A 69 1369 1241 HOH HOH . I 5 HOH A 70 1370 1242 HOH HOH . I 5 HOH A 71 1371 1243 HOH HOH . I 5 HOH A 72 1372 1244 HOH HOH . I 5 HOH A 73 1373 1245 HOH HOH . I 5 HOH A 74 1374 1246 HOH HOH . I 5 HOH A 75 1375 1247 HOH HOH . I 5 HOH A 76 1376 1249 HOH HOH . I 5 HOH A 77 1377 1250 HOH HOH . I 5 HOH A 78 1378 1251 HOH HOH . I 5 HOH A 79 1379 1252 HOH HOH . I 5 HOH A 80 1380 1253 HOH HOH . I 5 HOH A 81 1381 1254 HOH HOH . I 5 HOH A 82 1382 1255 HOH HOH . I 5 HOH A 83 1383 1257 HOH HOH . I 5 HOH A 84 1384 1258 HOH HOH . I 5 HOH A 85 1385 1259 HOH HOH . I 5 HOH A 86 1386 1260 HOH HOH . I 5 HOH A 87 1387 1261 HOH HOH . I 5 HOH A 88 1388 1262 HOH HOH . I 5 HOH A 89 1389 1263 HOH HOH . I 5 HOH A 90 1390 1264 HOH HOH . I 5 HOH A 91 1391 1265 HOH HOH . I 5 HOH A 92 1392 1266 HOH HOH . I 5 HOH A 93 1393 1267 HOH HOH . I 5 HOH A 94 1394 1269 HOH HOH . I 5 HOH A 95 1395 1270 HOH HOH . I 5 HOH A 96 1396 1271 HOH HOH . I 5 HOH A 97 1397 1272 HOH HOH . I 5 HOH A 98 1398 1273 HOH HOH . I 5 HOH A 99 1399 1274 HOH HOH . I 5 HOH A 100 1400 1275 HOH HOH . I 5 HOH A 101 1401 1276 HOH HOH . I 5 HOH A 102 1402 1277 HOH HOH . I 5 HOH A 103 1403 1278 HOH HOH . I 5 HOH A 104 1404 1279 HOH HOH . I 5 HOH A 105 1405 1281 HOH HOH . I 5 HOH A 106 1406 1282 HOH HOH . I 5 HOH A 107 1407 1283 HOH HOH . I 5 HOH A 108 1408 1284 HOH HOH . I 5 HOH A 109 1409 1285 HOH HOH . I 5 HOH A 110 1410 1286 HOH HOH . I 5 HOH A 111 1411 1287 HOH HOH . I 5 HOH A 112 1412 1288 HOH HOH . I 5 HOH A 113 1413 1289 HOH HOH . I 5 HOH A 114 1414 1290 HOH HOH . I 5 HOH A 115 1415 1292 HOH HOH . I 5 HOH A 116 1416 1293 HOH HOH . I 5 HOH A 117 1417 1294 HOH HOH . I 5 HOH A 118 1418 1295 HOH HOH . I 5 HOH A 119 1419 1297 HOH HOH . I 5 HOH A 120 1420 1298 HOH HOH . I 5 HOH A 121 1421 1299 HOH HOH . I 5 HOH A 122 1422 1300 HOH HOH . I 5 HOH A 123 1423 1301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 16.406 7.854 -15.186 1 19.25 ? C1 GOL 1205 A 1 HETATM 2 O O1 GOL . . . F 4 15.419 8.686 -14.523 1 17.72 ? O1 GOL 1205 A 1 HETATM 3 C C2 GOL . . . F 4 16.604 8.245 -16.656 1 18.11 ? C2 GOL 1205 A 1 HETATM 4 O O2 GOL . . . F 4 17.01 9.624 -16.775 1 17.98 ? O2 GOL 1205 A 1 HETATM 5 C C3 GOL . . . F 4 17.588 7.29 -17.32 1 18.77 ? C3 GOL 1205 A 1 HETATM 6 O O3 GOL . . . F 4 17.592 7.447 -18.732 1 20.91 ? O3 GOL 1205 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #