data_4ITH
#
_model_server_result.job_id            znpRMck36idFre6ohDxDbQ 
_model_server_result.datetime_utc      '2025-01-10 12:06:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ith 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":307}' 
#
_entry.id    4ITH 
#
_exptl.entry_id    4ITH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              277.706 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5R)-5-[(7-chloro-1H-indol-3-yl)methyl]-3-methylimidazolidine-2,4-dione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ITH 
_cell.length_a            47.128 
_cell.length_b            93.605 
_cell.length_c            129.07 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ITH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,Q 1 1 
B,J,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 P N N 
#
_chem_comp.formula           'C13 H12 Cl N3 O2' 
_chem_comp.formula_weight    277.706 
_chem_comp.id                RCM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5R)-5-[(7-chloro-1H-indol-3-yl)methyl]-3-methylimidazolidine-2,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 N3 RCM sing 277 n n 
CL1 C4 RCM sing 278 n n 
N3 C12 RCM sing 279 n n 
N3 C14 RCM sing 280 n n 
N1 C8 RCM sing 281 n y 
N1 C3 RCM sing 282 n y 
O1 C12 RCM doub 283 n n 
C8 C7 RCM doub 284 n y 
O2 C14 RCM doub 285 n n 
C12 C11 RCM sing 286 n n 
C4 C3 RCM doub 287 n y 
C4 C5 RCM sing 288 n y 
C3 C2 RCM sing 289 n y 
C14 N2 RCM sing 290 n n 
C7 C2 RCM sing 291 n y 
C7 C10 RCM sing 292 n n 
C5 C6 RCM doub 293 n y 
C2 C1 RCM doub 294 n y 
C11 N2 RCM sing 295 n n 
C11 C10 RCM sing 296 n n 
C6 C1 RCM sing 297 n y 
C17 H1 RCM sing 298 n n 
C17 H2 RCM sing 299 n n 
C17 H3 RCM sing 300 n n 
N2 H4 RCM sing 301 n n 
C11 H5 RCM sing 302 n n 
C10 H6 RCM sing 303 n n 
C10 H7 RCM sing 304 n n 
C8 H8 RCM sing 305 n n 
N1 H9 RCM sing 306 n n 
C5 H10 RCM sing 307 n n 
C6 H11 RCM sing 308 n n 
C1 H12 RCM sing 309 n n 
#
_atom_sites.entry_id                     4ITH 
_atom_sites.fract_transf_matrix[1][1]    0.021219 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010683 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007748 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IOD A 1 301 1 IOD IOD . 
D 2 IOD A 1 302 2 IOD IOD . 
E 2 IOD A 1 303 3 IOD IOD . 
F 2 IOD A 1 304 4 IOD IOD . 
G 2 IOD A 1 305 10 IOD IOD . 
H 3 NA A 1 306 1 NA NA . 
I 4 RCM A 1 307 1 RCM RCM . 
J 2 IOD B 1 301 5 IOD IOD . 
K 2 IOD B 1 302 6 IOD IOD . 
L 2 IOD B 1 303 7 IOD IOD . 
M 2 IOD B 1 304 8 IOD IOD . 
N 2 IOD B 1 305 9 IOD IOD . 
O 3 NA B 1 306 2 NA NA . 
P 4 RCM B 1 307 2 RCM RCM . 
Q 5 HOH A 1 401 1 HOH HOH . 
Q 5 HOH A 2 402 2 HOH HOH . 
Q 5 HOH A 3 403 3 HOH HOH . 
Q 5 HOH A 4 404 4 HOH HOH . 
Q 5 HOH A 5 405 5 HOH HOH . 
Q 5 HOH A 6 406 10 HOH HOH . 
Q 5 HOH A 7 407 13 HOH HOH . 
Q 5 HOH A 8 408 16 HOH HOH . 
Q 5 HOH A 9 409 17 HOH HOH . 
Q 5 HOH A 10 410 19 HOH HOH . 
Q 5 HOH A 11 411 20 HOH HOH . 
Q 5 HOH A 12 412 23 HOH HOH . 
Q 5 HOH A 13 413 24 HOH HOH . 
Q 5 HOH A 14 414 26 HOH HOH . 
Q 5 HOH A 15 415 27 HOH HOH . 
Q 5 HOH A 16 416 28 HOH HOH . 
Q 5 HOH A 17 417 29 HOH HOH . 
Q 5 HOH A 18 418 31 HOH HOH . 
Q 5 HOH A 19 419 34 HOH HOH . 
Q 5 HOH A 20 420 35 HOH HOH . 
Q 5 HOH A 21 421 37 HOH HOH . 
Q 5 HOH A 22 422 39 HOH HOH . 
Q 5 HOH A 23 423 41 HOH HOH . 
Q 5 HOH A 24 424 42 HOH HOH . 
Q 5 HOH A 25 425 44 HOH HOH . 
Q 5 HOH A 26 426 46 HOH HOH . 
Q 5 HOH A 27 427 49 HOH HOH . 
Q 5 HOH A 28 428 50 HOH HOH . 
Q 5 HOH A 29 429 52 HOH HOH . 
Q 5 HOH A 30 430 53 HOH HOH . 
Q 5 HOH A 31 431 54 HOH HOH . 
Q 5 HOH A 32 432 55 HOH HOH . 
Q 5 HOH A 33 433 58 HOH HOH . 
Q 5 HOH A 34 434 59 HOH HOH . 
Q 5 HOH A 35 435 60 HOH HOH . 
Q 5 HOH A 36 436 62 HOH HOH . 
Q 5 HOH A 37 437 63 HOH HOH . 
Q 5 HOH A 38 438 65 HOH HOH . 
Q 5 HOH A 39 439 66 HOH HOH . 
Q 5 HOH A 40 440 68 HOH HOH . 
Q 5 HOH A 41 441 70 HOH HOH . 
Q 5 HOH A 42 442 71 HOH HOH . 
Q 5 HOH A 43 443 72 HOH HOH . 
Q 5 HOH A 44 444 73 HOH HOH . 
Q 5 HOH A 45 445 75 HOH HOH . 
Q 5 HOH A 46 446 76 HOH HOH . 
Q 5 HOH A 47 447 77 HOH HOH . 
Q 5 HOH A 48 448 79 HOH HOH . 
Q 5 HOH A 49 449 80 HOH HOH . 
Q 5 HOH A 50 450 82 HOH HOH . 
Q 5 HOH A 51 451 83 HOH HOH . 
Q 5 HOH A 52 452 84 HOH HOH . 
Q 5 HOH A 53 453 85 HOH HOH . 
Q 5 HOH A 54 454 86 HOH HOH . 
Q 5 HOH A 55 455 87 HOH HOH . 
Q 5 HOH A 56 456 89 HOH HOH . 
Q 5 HOH A 57 457 90 HOH HOH . 
Q 5 HOH A 58 458 95 HOH HOH . 
Q 5 HOH A 59 459 110 HOH HOH . 
Q 5 HOH A 60 460 111 HOH HOH . 
Q 5 HOH A 61 461 112 HOH HOH . 
Q 5 HOH A 62 462 113 HOH HOH . 
Q 5 HOH A 63 463 114 HOH HOH . 
Q 5 HOH A 64 464 115 HOH HOH . 
Q 5 HOH A 65 465 130 HOH HOH . 
Q 5 HOH A 66 466 131 HOH HOH . 
R 5 HOH B 1 401 6 HOH HOH . 
R 5 HOH B 2 402 7 HOH HOH . 
R 5 HOH B 3 403 8 HOH HOH . 
R 5 HOH B 4 404 9 HOH HOH . 
R 5 HOH B 5 405 11 HOH HOH . 
R 5 HOH B 6 406 12 HOH HOH . 
R 5 HOH B 7 407 14 HOH HOH . 
R 5 HOH B 8 408 15 HOH HOH . 
R 5 HOH B 9 409 18 HOH HOH . 
R 5 HOH B 10 410 21 HOH HOH . 
R 5 HOH B 11 411 22 HOH HOH . 
R 5 HOH B 12 412 25 HOH HOH . 
R 5 HOH B 13 413 30 HOH HOH . 
R 5 HOH B 14 414 32 HOH HOH . 
R 5 HOH B 15 415 33 HOH HOH . 
R 5 HOH B 16 416 36 HOH HOH . 
R 5 HOH B 17 417 38 HOH HOH . 
R 5 HOH B 18 418 40 HOH HOH . 
R 5 HOH B 19 419 43 HOH HOH . 
R 5 HOH B 20 420 45 HOH HOH . 
R 5 HOH B 21 421 47 HOH HOH . 
R 5 HOH B 22 422 48 HOH HOH . 
R 5 HOH B 23 423 51 HOH HOH . 
R 5 HOH B 24 424 56 HOH HOH . 
R 5 HOH B 25 425 57 HOH HOH . 
R 5 HOH B 26 426 61 HOH HOH . 
R 5 HOH B 27 427 64 HOH HOH . 
R 5 HOH B 28 428 67 HOH HOH . 
R 5 HOH B 29 429 69 HOH HOH . 
R 5 HOH B 30 430 74 HOH HOH . 
R 5 HOH B 31 431 78 HOH HOH . 
R 5 HOH B 32 432 81 HOH HOH . 
R 5 HOH B 33 433 88 HOH HOH . 
R 5 HOH B 34 434 91 HOH HOH . 
R 5 HOH B 35 435 92 HOH HOH . 
R 5 HOH B 36 436 93 HOH HOH . 
R 5 HOH B 37 437 94 HOH HOH . 
R 5 HOH B 38 438 96 HOH HOH . 
R 5 HOH B 39 439 97 HOH HOH . 
R 5 HOH B 40 440 98 HOH HOH . 
R 5 HOH B 41 441 99 HOH HOH . 
R 5 HOH B 42 442 100 HOH HOH . 
R 5 HOH B 43 443 101 HOH HOH . 
R 5 HOH B 44 444 102 HOH HOH . 
R 5 HOH B 45 445 103 HOH HOH . 
R 5 HOH B 46 446 104 HOH HOH . 
R 5 HOH B 47 447 105 HOH HOH . 
R 5 HOH B 48 448 106 HOH HOH . 
R 5 HOH B 49 449 107 HOH HOH . 
R 5 HOH B 50 450 108 HOH HOH . 
R 5 HOH B 51 451 109 HOH HOH . 
R 5 HOH B 52 452 116 HOH HOH . 
R 5 HOH B 53 453 117 HOH HOH . 
R 5 HOH B 54 454 118 HOH HOH . 
R 5 HOH B 55 455 119 HOH HOH . 
R 5 HOH B 56 456 120 HOH HOH . 
R 5 HOH B 57 457 121 HOH HOH . 
R 5 HOH B 58 458 122 HOH HOH . 
R 5 HOH B 59 459 123 HOH HOH . 
R 5 HOH B 60 460 124 HOH HOH . 
R 5 HOH B 61 461 125 HOH HOH . 
R 5 HOH B 62 462 126 HOH HOH . 
R 5 HOH B 63 463 127 HOH HOH . 
R 5 HOH B 64 464 128 HOH HOH . 
R 5 HOH B 65 465 129 HOH HOH . 
R 5 HOH B 66 466 132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 RCM . . . I 4 -24.802 3.724 11.011 1 35.65 ? O2 RCM 307 A 1 
HETATM 2 C C14 RCM . . . I 4 -25.947 4.255 11.302 1 35.65 ? C14 RCM 307 A 1 
HETATM 3 N N3 RCM . . . I 4 -26.712 5.127 10.38 1 35.65 ? N3 RCM 307 A 1 
HETATM 4 C C17 RCM . . . I 4 -26.752 4.613 8.967 1 35.65 ? C17 RCM 307 A 1 
HETATM 5 C C12 RCM . . . I 4 -27.997 5.214 11.105 1 35.65 ? C12 RCM 307 A 1 
HETATM 6 O O1 RCM . . . I 4 -29.113 5.68 10.644 1 35.65 ? O1 RCM 307 A 1 
HETATM 7 N N2 RCM . . . I 4 -26.589 4.036 12.617 1 35.65 ? N2 RCM 307 A 1 
HETATM 8 C C11 RCM . . . I 4 -27.895 4.771 12.503 1 35.65 ? C11 RCM 307 A 1 
HETATM 9 C C10 RCM . . . I 4 -29.059 3.903 12.86 1 35.65 ? C10 RCM 307 A 1 
HETATM 10 C C7 RCM . . . I 4 -29.193 2.668 12.023 1 35.65 ? C7 RCM 307 A 1 
HETATM 11 C C2 RCM . . . I 4 -28.506 1.498 12.22 1 35.65 ? C2 RCM 307 A 1 
HETATM 12 C C8 RCM . . . I 4 -30.074 2.49 10.96 1 35.65 ? C8 RCM 307 A 1 
HETATM 13 N N1 RCM . . . I 4 -29.95 1.238 10.455 1 35.65 ? N1 RCM 307 A 1 
HETATM 14 C C3 RCM . . . I 4 -28.957 0.629 11.263 1 35.65 ? C3 RCM 307 A 1 
HETATM 15 C C4 RCM . . . I 4 -28.408 -0.635 11.229 1 35.65 ? C4 RCM 307 A 1 
HETATM 16 CL CL1 RCM . . . I 4 -28.839 -1.63 10.223 1 35.65 ? CL1 RCM 307 A 1 
HETATM 17 C C5 RCM . . . I 4 -27.429 -0.973 12.154 1 35.65 ? C5 RCM 307 A 1 
HETATM 18 C C6 RCM . . . I 4 -27.008 -0.063 13.104 1 35.65 ? C6 RCM 307 A 1 
HETATM 19 C C1 RCM . . . I 4 -27.542 1.195 13.149 1 35.65 ? C1 RCM 307 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#