data_4ITM
#
_model_server_result.job_id            V_YZmNIYfy1ngAKhqtNP8Q 
_model_server_result.datetime_utc      '2024-12-01 10:40:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4itm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    4ITM 
#
_exptl.entry_id    4ITM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ITM 
_cell.length_a            62.672 
_cell.length_b            68.13 
_cell.length_c            105.851 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ITM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     4ITM 
_atom_sites.fract_transf_matrix[1][1]    0.015956 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014678 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009447 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 401 401 ATP ATP . 
C 3 EPE A 1 402 402 EPE EPE . 
D 4 MPD A 1 403 403 MPD MPD . 
E 5 GOL A 1 404 404 GOL GOL . 
F 6 HOH A 1 501 1 HOH HOH . 
F 6 HOH A 2 502 2 HOH HOH . 
F 6 HOH A 3 503 3 HOH HOH . 
F 6 HOH A 4 504 4 HOH HOH . 
F 6 HOH A 5 505 5 HOH HOH . 
F 6 HOH A 6 506 6 HOH HOH . 
F 6 HOH A 7 507 7 HOH HOH . 
F 6 HOH A 8 508 8 HOH HOH . 
F 6 HOH A 9 509 9 HOH HOH . 
F 6 HOH A 10 510 10 HOH HOH . 
F 6 HOH A 11 511 11 HOH HOH . 
F 6 HOH A 12 512 12 HOH HOH . 
F 6 HOH A 13 513 13 HOH HOH . 
F 6 HOH A 14 514 14 HOH HOH . 
F 6 HOH A 15 515 15 HOH HOH . 
F 6 HOH A 16 516 16 HOH HOH . 
F 6 HOH A 17 517 17 HOH HOH . 
F 6 HOH A 18 518 18 HOH HOH . 
F 6 HOH A 19 519 19 HOH HOH . 
F 6 HOH A 20 520 20 HOH HOH . 
F 6 HOH A 21 521 21 HOH HOH . 
F 6 HOH A 22 522 22 HOH HOH . 
F 6 HOH A 23 523 23 HOH HOH . 
F 6 HOH A 24 524 24 HOH HOH . 
F 6 HOH A 25 525 25 HOH HOH . 
F 6 HOH A 26 526 26 HOH HOH . 
F 6 HOH A 27 527 27 HOH HOH . 
F 6 HOH A 28 528 28 HOH HOH . 
F 6 HOH A 29 529 29 HOH HOH . 
F 6 HOH A 30 530 30 HOH HOH . 
F 6 HOH A 31 531 31 HOH HOH . 
F 6 HOH A 32 532 32 HOH HOH . 
F 6 HOH A 33 533 33 HOH HOH . 
F 6 HOH A 34 534 34 HOH HOH . 
F 6 HOH A 35 535 35 HOH HOH . 
F 6 HOH A 36 536 36 HOH HOH . 
F 6 HOH A 37 537 37 HOH HOH . 
F 6 HOH A 38 538 38 HOH HOH . 
F 6 HOH A 39 539 39 HOH HOH . 
F 6 HOH A 40 540 40 HOH HOH . 
F 6 HOH A 41 541 41 HOH HOH . 
F 6 HOH A 42 542 42 HOH HOH . 
F 6 HOH A 43 543 43 HOH HOH . 
F 6 HOH A 44 544 44 HOH HOH . 
F 6 HOH A 45 545 45 HOH HOH . 
F 6 HOH A 46 546 46 HOH HOH . 
F 6 HOH A 47 547 47 HOH HOH . 
F 6 HOH A 48 548 48 HOH HOH . 
F 6 HOH A 49 549 49 HOH HOH . 
F 6 HOH A 50 550 50 HOH HOH . 
F 6 HOH A 51 551 51 HOH HOH . 
F 6 HOH A 52 552 52 HOH HOH . 
F 6 HOH A 53 553 53 HOH HOH . 
F 6 HOH A 54 554 54 HOH HOH . 
F 6 HOH A 55 555 55 HOH HOH . 
F 6 HOH A 56 556 56 HOH HOH . 
F 6 HOH A 57 557 57 HOH HOH . 
F 6 HOH A 58 558 58 HOH HOH . 
F 6 HOH A 59 559 59 HOH HOH . 
F 6 HOH A 60 560 60 HOH HOH . 
F 6 HOH A 61 561 61 HOH HOH . 
F 6 HOH A 62 562 62 HOH HOH . 
F 6 HOH A 63 563 63 HOH HOH . 
F 6 HOH A 64 564 64 HOH HOH . 
F 6 HOH A 65 565 65 HOH HOH . 
F 6 HOH A 66 566 66 HOH HOH . 
F 6 HOH A 67 567 67 HOH HOH . 
F 6 HOH A 68 568 68 HOH HOH . 
F 6 HOH A 69 569 69 HOH HOH . 
F 6 HOH A 70 570 70 HOH HOH . 
F 6 HOH A 71 571 71 HOH HOH . 
F 6 HOH A 72 572 72 HOH HOH . 
F 6 HOH A 73 573 73 HOH HOH . 
F 6 HOH A 74 574 74 HOH HOH . 
F 6 HOH A 75 575 75 HOH HOH . 
F 6 HOH A 76 576 76 HOH HOH . 
F 6 HOH A 77 577 77 HOH HOH . 
F 6 HOH A 78 578 78 HOH HOH . 
F 6 HOH A 79 579 79 HOH HOH . 
F 6 HOH A 80 580 80 HOH HOH . 
F 6 HOH A 81 581 81 HOH HOH . 
F 6 HOH A 82 582 82 HOH HOH . 
F 6 HOH A 83 583 83 HOH HOH . 
F 6 HOH A 84 584 84 HOH HOH . 
F 6 HOH A 85 585 85 HOH HOH . 
F 6 HOH A 86 586 86 HOH HOH . 
F 6 HOH A 87 587 87 HOH HOH . 
F 6 HOH A 88 588 88 HOH HOH . 
F 6 HOH A 89 589 89 HOH HOH . 
F 6 HOH A 90 590 90 HOH HOH . 
F 6 HOH A 91 591 91 HOH HOH . 
F 6 HOH A 92 592 92 HOH HOH . 
F 6 HOH A 93 593 93 HOH HOH . 
F 6 HOH A 94 594 94 HOH HOH . 
F 6 HOH A 95 595 95 HOH HOH . 
F 6 HOH A 96 596 96 HOH HOH . 
F 6 HOH A 97 597 97 HOH HOH . 
F 6 HOH A 98 598 98 HOH HOH . 
F 6 HOH A 99 599 99 HOH HOH . 
F 6 HOH A 100 600 100 HOH HOH . 
F 6 HOH A 101 601 101 HOH HOH . 
F 6 HOH A 102 602 102 HOH HOH . 
F 6 HOH A 103 603 103 HOH HOH . 
F 6 HOH A 104 604 104 HOH HOH . 
F 6 HOH A 105 605 105 HOH HOH . 
F 6 HOH A 106 606 106 HOH HOH . 
F 6 HOH A 107 607 107 HOH HOH . 
F 6 HOH A 108 608 108 HOH HOH . 
F 6 HOH A 109 609 109 HOH HOH . 
F 6 HOH A 110 610 110 HOH HOH . 
F 6 HOH A 111 611 111 HOH HOH . 
F 6 HOH A 112 612 112 HOH HOH . 
F 6 HOH A 113 613 113 HOH HOH . 
F 6 HOH A 114 614 114 HOH HOH . 
F 6 HOH A 115 615 115 HOH HOH . 
F 6 HOH A 116 616 116 HOH HOH . 
F 6 HOH A 117 617 117 HOH HOH . 
F 6 HOH A 118 618 118 HOH HOH . 
F 6 HOH A 119 619 119 HOH HOH . 
F 6 HOH A 120 620 120 HOH HOH . 
F 6 HOH A 121 621 121 HOH HOH . 
F 6 HOH A 122 622 122 HOH HOH . 
F 6 HOH A 123 623 123 HOH HOH . 
F 6 HOH A 124 624 124 HOH HOH . 
F 6 HOH A 125 625 125 HOH HOH . 
F 6 HOH A 126 626 126 HOH HOH . 
F 6 HOH A 127 627 127 HOH HOH . 
F 6 HOH A 128 628 128 HOH HOH . 
F 6 HOH A 129 629 129 HOH HOH . 
F 6 HOH A 130 630 130 HOH HOH . 
F 6 HOH A 131 631 131 HOH HOH . 
F 6 HOH A 132 632 132 HOH HOH . 
F 6 HOH A 133 633 133 HOH HOH . 
F 6 HOH A 134 634 134 HOH HOH . 
F 6 HOH A 135 635 135 HOH HOH . 
F 6 HOH A 136 636 136 HOH HOH . 
F 6 HOH A 137 637 137 HOH HOH . 
F 6 HOH A 138 638 138 HOH HOH . 
F 6 HOH A 139 639 139 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . B 2 3.895 -0.036 -3.694 1 21.26 ? PG ATP 401 A 1 
HETATM 2 O O1G ATP . . . B 2 3.54 0.565 -5.024 1 25.38 ? O1G ATP 401 A 1 
HETATM 3 O O2G ATP . . . B 2 4.037 -1.535 -3.657 1 23.74 ? O2G ATP 401 A 1 
HETATM 4 O O3G ATP . . . B 2 5.011 0.684 -2.969 1 32.4 ? O3G ATP 401 A 1 
HETATM 5 P PB ATP . . . B 2 1.721 1.534 -2.66 1 19.41 ? PB ATP 401 A 1 
HETATM 6 O O1B ATP . . . B 2 0.476 1.422 -3.513 1 25.3 ? O1B ATP 401 A 1 
HETATM 7 O O2B ATP . . . B 2 2.599 2.74 -2.839 1 29.01 ? O2B ATP 401 A 1 
HETATM 8 O O3B ATP . . . B 2 2.62 0.2 -2.732 1 36.45 ? O3B ATP 401 A 1 
HETATM 9 P PA ATP . . . B 2 0.569 0.353 -0.257 1 22.55 ? PA ATP 401 A 1 
HETATM 10 O O1A ATP . . . B 2 -0.487 1.168 0.443 1 24.59 ? O1A ATP 401 A 1 
HETATM 11 O O2A ATP . . . B 2 0.142 -0.862 -1.032 1 19.26 ? O2A ATP 401 A 1 
HETATM 12 O O3A ATP . . . B 2 1.312 1.498 -1.114 1 29.96 ? O3A ATP 401 A 1 
HETATM 13 O O5' ATP . . . B 2 1.685 -0.088 0.833 1 21.26 ? O5' ATP 401 A 1 
HETATM 14 C C5' ATP . . . B 2 2.572 0.906 1.366 1 18.87 ? C5' ATP 401 A 1 
HETATM 15 C C4' ATP . . . B 2 3.995 0.379 1.561 1 17.32 ? C4' ATP 401 A 1 
HETATM 16 O O4' ATP . . . B 2 4.06 -0.626 2.583 1 14.31 ? O4' ATP 401 A 1 
HETATM 17 C C3' ATP . . . B 2 4.568 -0.249 0.298 1 17.91 ? C3' ATP 401 A 1 
HETATM 18 O O3' ATP . . . B 2 5.21 0.741 -0.513 1 15.01 ? O3' ATP 401 A 1 
HETATM 19 C C2' ATP . . . B 2 5.497 -1.338 0.831 1 19.88 ? C2' ATP 401 A 1 
HETATM 20 O O2' ATP . . . B 2 6.776 -0.81 1.195 1 18.1 ? O2' ATP 401 A 1 
HETATM 21 C C1' ATP . . . B 2 4.873 -1.728 2.158 1 15.22 ? C1' ATP 401 A 1 
HETATM 22 N N9 ATP . . . B 2 3.945 -2.876 2.052 1 16.65 ? N9 ATP 401 A 1 
HETATM 23 C C8 ATP . . . B 2 3.17 -3.193 0.993 1 15.28 ? C8 ATP 401 A 1 
HETATM 24 N N7 ATP . . . B 2 2.413 -4.28 1.247 1 14.11 ? N7 ATP 401 A 1 
HETATM 25 C C5 ATP . . . B 2 2.701 -4.669 2.512 1 17.97 ? C5 ATP 401 A 1 
HETATM 26 C C6 ATP . . . B 2 2.25 -5.752 3.414 1 16.85 ? C6 ATP 401 A 1 
HETATM 27 N N6 ATP . . . B 2 1.319 -6.654 3.003 1 17.58 ? N6 ATP 401 A 1 
HETATM 28 N N1 ATP . . . B 2 2.81 -5.805 4.651 1 20.72 ? N1 ATP 401 A 1 
HETATM 29 C C2 ATP . . . B 2 3.726 -4.902 5.067 1 21.45 ? C2 ATP 401 A 1 
HETATM 30 N N3 ATP . . . B 2 4.182 -3.894 4.304 1 14.82 ? N3 ATP 401 A 1 
HETATM 31 C C4 ATP . . . B 2 3.706 -3.735 3.041 1 17.46 ? C4 ATP 401 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#