data_4ITP # _model_server_result.job_id gj333DizNJ5jCToAYMGJUA _model_server_result.datetime_utc '2024-10-18 16:21:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4itp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4ITP # _exptl.entry_id 4ITP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.16 _cell.angle_gamma 90 _cell.entry_id 4ITP _cell.length_a 42.34 _cell.length_b 41.274 _cell.length_c 72.007 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ITP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 91 A HIS 94 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc2 A NE2 HIS 93 A HIS 96 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc3 A ND1 HIS 116 A HIS 119 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 C ZN ZN . A ZN 302 1_555 E N1 1GD . A 1GD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 176 n n C1 C2 GOL sing 177 n n C1 H11 GOL sing 178 n n C1 H12 GOL sing 179 n n O1 HO1 GOL sing 180 n n C2 O2 GOL sing 181 n n C2 C3 GOL sing 182 n n C2 H2 GOL sing 183 n n O2 HO2 GOL sing 184 n n C3 O3 GOL sing 185 n n C3 H31 GOL sing 186 n n C3 H32 GOL sing 187 n n O3 HO3 GOL sing 188 n n # _atom_sites.entry_id 4ITP _atom_sites.fract_transf_matrix[1][1] 0.023618 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00596 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1816 GOL GOL . C 3 ZN A 1 302 262 ZN ZN . D 2 GOL A 1 303 1816 GOL GOL . E 4 1GD A 1 304 1 1GD LIG . F 5 DMS A 1 305 265 DMS DMS . G 2 GOL A 1 306 1816 GOL GOL . H 2 GOL A 1 307 1816 GOL GOL . I 2 GOL A 1 308 1816 GOL GOL . J 6 HOH A 1 401 1 HOH HOH . J 6 HOH A 2 402 2 HOH HOH . J 6 HOH A 3 403 3 HOH HOH . J 6 HOH A 4 404 4 HOH HOH . J 6 HOH A 5 405 5 HOH HOH . J 6 HOH A 6 406 6 HOH HOH . J 6 HOH A 7 407 7 HOH HOH . J 6 HOH A 8 408 8 HOH HOH . J 6 HOH A 9 409 9 HOH HOH . J 6 HOH A 10 410 10 HOH HOH . J 6 HOH A 11 411 11 HOH HOH . J 6 HOH A 12 412 12 HOH HOH . J 6 HOH A 13 413 13 HOH HOH . J 6 HOH A 14 414 14 HOH HOH . J 6 HOH A 15 415 15 HOH HOH . J 6 HOH A 16 416 16 HOH HOH . J 6 HOH A 17 417 17 HOH HOH . J 6 HOH A 18 418 18 HOH HOH . J 6 HOH A 19 419 19 HOH HOH . J 6 HOH A 20 420 20 HOH HOH . J 6 HOH A 21 421 21 HOH HOH . J 6 HOH A 22 422 22 HOH HOH . J 6 HOH A 23 423 23 HOH HOH . J 6 HOH A 24 424 24 HOH HOH . J 6 HOH A 25 425 25 HOH HOH . J 6 HOH A 26 426 26 HOH HOH . J 6 HOH A 27 427 27 HOH HOH . J 6 HOH A 28 428 28 HOH HOH . J 6 HOH A 29 429 29 HOH HOH . J 6 HOH A 30 430 30 HOH HOH . J 6 HOH A 31 431 31 HOH HOH . J 6 HOH A 32 432 32 HOH HOH . J 6 HOH A 33 433 33 HOH HOH . J 6 HOH A 34 434 34 HOH HOH . J 6 HOH A 35 435 35 HOH HOH . J 6 HOH A 36 436 36 HOH HOH . J 6 HOH A 37 437 37 HOH HOH . J 6 HOH A 38 438 38 HOH HOH . J 6 HOH A 39 439 39 HOH HOH . J 6 HOH A 40 440 40 HOH HOH . J 6 HOH A 41 441 41 HOH HOH . J 6 HOH A 42 442 42 HOH HOH . J 6 HOH A 43 443 43 HOH HOH . J 6 HOH A 44 444 44 HOH HOH . J 6 HOH A 45 445 45 HOH HOH . J 6 HOH A 46 446 46 HOH HOH . J 6 HOH A 47 447 47 HOH HOH . J 6 HOH A 48 448 48 HOH HOH . J 6 HOH A 49 449 49 HOH HOH . J 6 HOH A 50 450 50 HOH HOH . J 6 HOH A 51 451 51 HOH HOH . J 6 HOH A 52 452 52 HOH HOH . J 6 HOH A 53 453 53 HOH HOH . J 6 HOH A 54 454 54 HOH HOH . J 6 HOH A 55 455 55 HOH HOH . J 6 HOH A 56 456 56 HOH HOH . J 6 HOH A 57 457 57 HOH HOH . J 6 HOH A 58 458 58 HOH HOH . J 6 HOH A 59 459 59 HOH HOH . J 6 HOH A 60 460 60 HOH HOH . J 6 HOH A 61 461 61 HOH HOH . J 6 HOH A 62 462 63 HOH HOH . J 6 HOH A 63 463 64 HOH HOH . J 6 HOH A 64 464 65 HOH HOH . J 6 HOH A 65 465 66 HOH HOH . J 6 HOH A 66 466 67 HOH HOH . J 6 HOH A 67 467 68 HOH HOH . J 6 HOH A 68 468 69 HOH HOH . J 6 HOH A 69 469 70 HOH HOH . J 6 HOH A 70 470 71 HOH HOH . J 6 HOH A 71 471 72 HOH HOH . J 6 HOH A 72 472 73 HOH HOH . J 6 HOH A 73 473 74 HOH HOH . J 6 HOH A 74 474 75 HOH HOH . J 6 HOH A 75 475 76 HOH HOH . J 6 HOH A 76 476 77 HOH HOH . J 6 HOH A 77 477 78 HOH HOH . J 6 HOH A 78 478 79 HOH HOH . J 6 HOH A 79 479 80 HOH HOH . J 6 HOH A 80 480 81 HOH HOH . J 6 HOH A 81 481 82 HOH HOH . J 6 HOH A 82 482 83 HOH HOH . J 6 HOH A 83 483 84 HOH HOH . J 6 HOH A 84 484 85 HOH HOH . J 6 HOH A 85 485 86 HOH HOH . J 6 HOH A 86 486 87 HOH HOH . J 6 HOH A 87 487 88 HOH HOH . J 6 HOH A 88 488 89 HOH HOH . J 6 HOH A 89 489 91 HOH HOH . J 6 HOH A 90 490 92 HOH HOH . J 6 HOH A 91 491 93 HOH HOH . J 6 HOH A 92 492 94 HOH HOH . J 6 HOH A 93 493 95 HOH HOH . J 6 HOH A 94 494 96 HOH HOH . J 6 HOH A 95 495 97 HOH HOH . J 6 HOH A 96 496 98 HOH HOH . J 6 HOH A 97 497 99 HOH HOH . J 6 HOH A 98 498 100 HOH HOH . J 6 HOH A 99 499 101 HOH HOH . J 6 HOH A 100 500 102 HOH HOH . J 6 HOH A 101 501 103 HOH HOH . J 6 HOH A 102 502 104 HOH HOH . J 6 HOH A 103 503 105 HOH HOH . J 6 HOH A 104 504 106 HOH HOH . J 6 HOH A 105 505 107 HOH HOH . J 6 HOH A 106 506 108 HOH HOH . J 6 HOH A 107 507 109 HOH HOH . J 6 HOH A 108 508 110 HOH HOH . J 6 HOH A 109 509 111 HOH HOH . J 6 HOH A 110 510 112 HOH HOH . J 6 HOH A 111 511 113 HOH HOH . J 6 HOH A 112 512 114 HOH HOH . J 6 HOH A 113 513 115 HOH HOH . J 6 HOH A 114 514 116 HOH HOH . J 6 HOH A 115 515 117 HOH HOH . J 6 HOH A 116 516 118 HOH HOH . J 6 HOH A 117 517 119 HOH HOH . J 6 HOH A 118 518 120 HOH HOH . J 6 HOH A 119 519 122 HOH HOH . J 6 HOH A 120 520 123 HOH HOH . J 6 HOH A 121 521 124 HOH HOH . J 6 HOH A 122 522 125 HOH HOH . J 6 HOH A 123 523 126 HOH HOH . J 6 HOH A 124 524 128 HOH HOH . J 6 HOH A 125 525 129 HOH HOH . J 6 HOH A 126 526 130 HOH HOH . J 6 HOH A 127 527 131 HOH HOH . J 6 HOH A 128 528 132 HOH HOH . J 6 HOH A 129 529 133 HOH HOH . J 6 HOH A 130 530 135 HOH HOH . J 6 HOH A 131 531 136 HOH HOH . J 6 HOH A 132 532 137 HOH HOH . J 6 HOH A 133 533 138 HOH HOH . J 6 HOH A 134 534 139 HOH HOH . J 6 HOH A 135 535 140 HOH HOH . J 6 HOH A 136 536 141 HOH HOH . J 6 HOH A 137 537 142 HOH HOH . J 6 HOH A 138 538 143 HOH HOH . J 6 HOH A 139 539 144 HOH HOH . J 6 HOH A 140 540 145 HOH HOH . J 6 HOH A 141 541 146 HOH HOH . J 6 HOH A 142 542 147 HOH HOH . J 6 HOH A 143 543 148 HOH HOH . J 6 HOH A 144 544 149 HOH HOH . J 6 HOH A 145 545 150 HOH HOH . J 6 HOH A 146 546 151 HOH HOH . J 6 HOH A 147 547 152 HOH HOH . J 6 HOH A 148 548 153 HOH HOH . J 6 HOH A 149 549 154 HOH HOH . J 6 HOH A 150 550 155 HOH HOH . J 6 HOH A 151 551 156 HOH HOH . J 6 HOH A 152 552 157 HOH HOH . J 6 HOH A 153 553 158 HOH HOH . J 6 HOH A 154 554 159 HOH HOH . J 6 HOH A 155 555 160 HOH HOH . J 6 HOH A 156 556 161 HOH HOH . J 6 HOH A 157 557 162 HOH HOH . J 6 HOH A 158 558 163 HOH HOH . J 6 HOH A 159 559 164 HOH HOH . J 6 HOH A 160 560 165 HOH HOH . J 6 HOH A 161 561 166 HOH HOH . J 6 HOH A 162 562 167 HOH HOH . J 6 HOH A 163 563 168 HOH HOH . J 6 HOH A 164 564 169 HOH HOH . J 6 HOH A 165 565 170 HOH HOH . J 6 HOH A 166 566 171 HOH HOH . J 6 HOH A 167 567 172 HOH HOH . J 6 HOH A 168 568 173 HOH HOH . J 6 HOH A 169 569 174 HOH HOH . J 6 HOH A 170 570 175 HOH HOH . J 6 HOH A 171 571 176 HOH HOH . J 6 HOH A 172 572 177 HOH HOH . J 6 HOH A 173 573 178 HOH HOH . J 6 HOH A 174 574 179 HOH HOH . J 6 HOH A 175 575 180 HOH HOH . J 6 HOH A 176 576 181 HOH HOH . J 6 HOH A 177 577 182 HOH HOH . J 6 HOH A 178 578 183 HOH HOH . J 6 HOH A 179 579 185 HOH HOH . J 6 HOH A 180 580 187 HOH HOH . J 6 HOH A 181 581 188 HOH HOH . J 6 HOH A 182 582 189 HOH HOH . J 6 HOH A 183 583 191 HOH HOH . J 6 HOH A 184 584 192 HOH HOH . J 6 HOH A 185 585 193 HOH HOH . J 6 HOH A 186 586 194 HOH HOH . J 6 HOH A 187 587 195 HOH HOH . J 6 HOH A 188 588 196 HOH HOH . J 6 HOH A 189 589 197 HOH HOH . J 6 HOH A 190 590 199 HOH HOH . J 6 HOH A 191 591 201 HOH HOH . J 6 HOH A 192 592 202 HOH HOH . J 6 HOH A 193 593 205 HOH HOH . J 6 HOH A 194 594 206 HOH HOH . J 6 HOH A 195 595 207 HOH HOH . J 6 HOH A 196 596 208 HOH HOH . J 6 HOH A 197 597 209 HOH HOH . J 6 HOH A 198 598 210 HOH HOH . J 6 HOH A 199 599 212 HOH HOH . J 6 HOH A 200 600 213 HOH HOH . J 6 HOH A 201 601 214 HOH HOH . J 6 HOH A 202 602 216 HOH HOH . J 6 HOH A 203 603 217 HOH HOH . J 6 HOH A 204 604 219 HOH HOH . J 6 HOH A 205 605 220 HOH HOH . J 6 HOH A 206 606 224 HOH HOH . J 6 HOH A 207 607 225 HOH HOH . J 6 HOH A 208 608 227 HOH HOH . J 6 HOH A 209 609 228 HOH HOH . J 6 HOH A 210 610 230 HOH HOH . J 6 HOH A 211 611 232 HOH HOH . J 6 HOH A 212 612 233 HOH HOH . J 6 HOH A 213 613 234 HOH HOH . J 6 HOH A 214 614 235 HOH HOH . J 6 HOH A 215 615 236 HOH HOH . J 6 HOH A 216 616 237 HOH HOH . J 6 HOH A 217 617 240 HOH HOH . J 6 HOH A 218 618 241 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 16.732 2.064 11.356 1 23.17 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . B 2 15.982 3.086 10.773 1 20.95 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . B 2 16.239 0.647 11.133 1 18.95 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . B 2 16.032 0.376 9.785 1 17.55 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . B 2 17.048 -0.421 11.848 1 19.44 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . B 2 18.303 -0.691 11.308 1 19.63 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #