data_4ITY # _model_server_result.job_id 7h6C9gbZTZjimqzSRjI0kA _model_server_result.datetime_utc '2024-11-08 03:54:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ity # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4ITY # _exptl.entry_id 4ITY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ITY _cell.length_a 89.52 _cell.length_b 89.52 _cell.length_c 115.079 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ITY _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 115 A HIS 114 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc2 A OD2 ASP 138 A ASP 137 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc3 A OD1 ASP 138 A ASP 137 1_555 D MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc4 A ND1 HIS 140 A HIS 139 1_555 D MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 A OD2 ASP 142 A ASP 141 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc6 A OD2 ASP 244 A ASP 243 1_555 C MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc7 A OD2 ASP 244 A ASP 243 1_555 D MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc8 A OD1 ASP 246 A ASP 245 1_555 D MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc9 A OD2 ASP 246 A ASP 245 1_555 D MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc10 C MN MN . A MN 502 1_555 E O HOH . A HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc11 C MN MN . A MN 502 1_555 E O HOH . A HOH 658 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc12 D MN MN . A MN 503 1_555 E O HOH . A HOH 658 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ITY _atom_sites.fract_transf_matrix[1][1] 0.011171 _atom_sites.fract_transf_matrix[1][2] 0.006449 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00869 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 501 GOL GOL . C 3 MN A 1 502 400 MN MN . D 3 MN A 1 503 401 MN MN . E 4 HOH A 1 601 1 HOH HOH . E 4 HOH A 2 602 2 HOH HOH . E 4 HOH A 3 603 3 HOH HOH . E 4 HOH A 4 604 4 HOH HOH . E 4 HOH A 5 605 5 HOH HOH . E 4 HOH A 6 606 6 HOH HOH . E 4 HOH A 7 607 7 HOH HOH . E 4 HOH A 8 608 8 HOH HOH . E 4 HOH A 9 609 9 HOH HOH . E 4 HOH A 10 610 10 HOH HOH . E 4 HOH A 11 611 11 HOH HOH . E 4 HOH A 12 612 12 HOH HOH . E 4 HOH A 13 613 13 HOH HOH . E 4 HOH A 14 614 14 HOH HOH . E 4 HOH A 15 615 15 HOH HOH . E 4 HOH A 16 616 16 HOH HOH . E 4 HOH A 17 617 17 HOH HOH . E 4 HOH A 18 618 18 HOH HOH . E 4 HOH A 19 619 19 HOH HOH . E 4 HOH A 20 620 20 HOH HOH . E 4 HOH A 21 621 21 HOH HOH . E 4 HOH A 22 622 22 HOH HOH . E 4 HOH A 23 623 23 HOH HOH . E 4 HOH A 24 624 24 HOH HOH . E 4 HOH A 25 625 25 HOH HOH . E 4 HOH A 26 626 26 HOH HOH . E 4 HOH A 27 627 27 HOH HOH . E 4 HOH A 28 628 28 HOH HOH . E 4 HOH A 29 629 29 HOH HOH . E 4 HOH A 30 630 30 HOH HOH . E 4 HOH A 31 631 31 HOH HOH . E 4 HOH A 32 632 32 HOH HOH . E 4 HOH A 33 633 33 HOH HOH . E 4 HOH A 34 634 34 HOH HOH . E 4 HOH A 35 635 35 HOH HOH . E 4 HOH A 36 636 36 HOH HOH . E 4 HOH A 37 637 37 HOH HOH . E 4 HOH A 38 638 38 HOH HOH . E 4 HOH A 39 639 39 HOH HOH . E 4 HOH A 40 640 40 HOH HOH . E 4 HOH A 41 641 41 HOH HOH . E 4 HOH A 42 642 42 HOH HOH . E 4 HOH A 43 643 43 HOH HOH . E 4 HOH A 44 644 44 HOH HOH . E 4 HOH A 45 645 45 HOH HOH . E 4 HOH A 46 646 46 HOH HOH . E 4 HOH A 47 647 47 HOH HOH . E 4 HOH A 48 648 48 HOH HOH . E 4 HOH A 49 649 49 HOH HOH . E 4 HOH A 50 650 50 HOH HOH . E 4 HOH A 51 651 51 HOH HOH . E 4 HOH A 52 652 52 HOH HOH . E 4 HOH A 53 653 53 HOH HOH . E 4 HOH A 54 654 54 HOH HOH . E 4 HOH A 55 655 55 HOH HOH . E 4 HOH A 56 656 56 HOH HOH . E 4 HOH A 57 657 57 HOH HOH . E 4 HOH A 58 658 58 HOH HOH . E 4 HOH A 59 659 59 HOH HOH . E 4 HOH A 60 660 60 HOH HOH . E 4 HOH A 61 661 61 HOH HOH . E 4 HOH A 62 662 62 HOH HOH . E 4 HOH A 63 663 63 HOH HOH . E 4 HOH A 64 664 64 HOH HOH . E 4 HOH A 65 665 65 HOH HOH . E 4 HOH A 66 666 66 HOH HOH . E 4 HOH A 67 667 67 HOH HOH . E 4 HOH A 68 668 68 HOH HOH . E 4 HOH A 69 669 69 HOH HOH . E 4 HOH A 70 670 70 HOH HOH . E 4 HOH A 71 671 71 HOH HOH . E 4 HOH A 72 672 72 HOH HOH . E 4 HOH A 73 673 73 HOH HOH . E 4 HOH A 74 674 74 HOH HOH . E 4 HOH A 75 675 75 HOH HOH . E 4 HOH A 76 676 76 HOH HOH . E 4 HOH A 77 677 77 HOH HOH . E 4 HOH A 78 678 78 HOH HOH . E 4 HOH A 79 679 79 HOH HOH . E 4 HOH A 80 680 80 HOH HOH . E 4 HOH A 81 681 81 HOH HOH . E 4 HOH A 82 682 82 HOH HOH . E 4 HOH A 83 683 83 HOH HOH . E 4 HOH A 84 684 84 HOH HOH . E 4 HOH A 85 685 85 HOH HOH . E 4 HOH A 86 686 86 HOH HOH . E 4 HOH A 87 687 87 HOH HOH . E 4 HOH A 88 688 88 HOH HOH . E 4 HOH A 89 689 89 HOH HOH . E 4 HOH A 90 690 90 HOH HOH . E 4 HOH A 91 691 91 HOH HOH . E 4 HOH A 92 692 92 HOH HOH . E 4 HOH A 93 693 93 HOH HOH . E 4 HOH A 94 694 94 HOH HOH . E 4 HOH A 95 695 95 HOH HOH . E 4 HOH A 96 696 96 HOH HOH . E 4 HOH A 97 697 97 HOH HOH . E 4 HOH A 98 698 98 HOH HOH . E 4 HOH A 99 699 99 HOH HOH . E 4 HOH A 100 700 100 HOH HOH . E 4 HOH A 101 701 101 HOH HOH . E 4 HOH A 102 702 102 HOH HOH . E 4 HOH A 103 703 103 HOH HOH . E 4 HOH A 104 704 104 HOH HOH . E 4 HOH A 105 705 105 HOH HOH . E 4 HOH A 106 706 106 HOH HOH . E 4 HOH A 107 707 107 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.783 _atom_site.Cartn_y -15.38 _atom_site.Cartn_z -4.959 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #