data_4IU1 # _model_server_result.job_id k8m8Y1jiiRbbovmPfVPrsg _model_server_result.datetime_utc '2024-12-02 10:51:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4iu1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4IU1 # _exptl.entry_id 4IU1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IU1 _cell.length_a 89.615 _cell.length_b 89.615 _cell.length_c 114.556 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 115 A HIS 114 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc2 A OD2 ASP 138 A ASP 137 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 A OD1 ASP 138 A ASP 137 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc4 A ND1 HIS 140 A HIS 139 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc5 A OD2 ASP 142 A ASP 141 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc6 A OD2 ASP 244 A ASP 243 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc7 A OD2 ASP 244 A ASP 243 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc8 A OD1 ASP 246 A ASP 245 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc9 A OD2 ASP 246 A ASP 245 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc10 B MN MN . A MN 401 1_555 D OH1 NNH . A NNH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4IU1 _atom_sites.fract_transf_matrix[1][1] 0.011159 _atom_sites.fract_transf_matrix[1][2] 0.006443 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 401 400 MN MN . C 2 MN A 1 402 401 MN MN . D 3 NNH A 1 403 500 NNH NNH . E 4 GOL A 1 404 501 GOL GOL . F 5 HOH A 1 501 1 HOH HOH . F 5 HOH A 2 502 2 HOH HOH . F 5 HOH A 3 503 3 HOH HOH . F 5 HOH A 4 504 4 HOH HOH . F 5 HOH A 5 505 5 HOH HOH . F 5 HOH A 6 506 6 HOH HOH . F 5 HOH A 7 507 7 HOH HOH . F 5 HOH A 8 508 8 HOH HOH . F 5 HOH A 9 509 9 HOH HOH . F 5 HOH A 10 510 10 HOH HOH . F 5 HOH A 11 511 11 HOH HOH . F 5 HOH A 12 512 12 HOH HOH . F 5 HOH A 13 513 13 HOH HOH . F 5 HOH A 14 514 14 HOH HOH . F 5 HOH A 15 515 15 HOH HOH . F 5 HOH A 16 516 16 HOH HOH . F 5 HOH A 17 517 17 HOH HOH . F 5 HOH A 18 518 18 HOH HOH . F 5 HOH A 19 519 19 HOH HOH . F 5 HOH A 20 520 20 HOH HOH . F 5 HOH A 21 521 21 HOH HOH . F 5 HOH A 22 522 22 HOH HOH . F 5 HOH A 23 523 23 HOH HOH . F 5 HOH A 24 524 24 HOH HOH . F 5 HOH A 25 525 25 HOH HOH . F 5 HOH A 26 526 26 HOH HOH . F 5 HOH A 27 527 27 HOH HOH . F 5 HOH A 28 528 28 HOH HOH . F 5 HOH A 29 529 29 HOH HOH . F 5 HOH A 30 530 30 HOH HOH . F 5 HOH A 31 531 31 HOH HOH . F 5 HOH A 32 532 32 HOH HOH . F 5 HOH A 33 533 33 HOH HOH . F 5 HOH A 34 534 34 HOH HOH . F 5 HOH A 35 535 35 HOH HOH . F 5 HOH A 36 536 36 HOH HOH . F 5 HOH A 37 537 37 HOH HOH . F 5 HOH A 38 538 38 HOH HOH . F 5 HOH A 39 539 39 HOH HOH . F 5 HOH A 40 540 40 HOH HOH . F 5 HOH A 41 541 41 HOH HOH . F 5 HOH A 42 542 42 HOH HOH . F 5 HOH A 43 543 43 HOH HOH . F 5 HOH A 44 544 44 HOH HOH . F 5 HOH A 45 545 45 HOH HOH . F 5 HOH A 46 546 46 HOH HOH . F 5 HOH A 47 547 47 HOH HOH . F 5 HOH A 48 548 48 HOH HOH . F 5 HOH A 49 549 49 HOH HOH . F 5 HOH A 50 550 50 HOH HOH . F 5 HOH A 51 551 51 HOH HOH . F 5 HOH A 52 552 52 HOH HOH . F 5 HOH A 53 553 53 HOH HOH . F 5 HOH A 54 554 54 HOH HOH . F 5 HOH A 55 555 55 HOH HOH . F 5 HOH A 56 556 56 HOH HOH . F 5 HOH A 57 557 57 HOH HOH . F 5 HOH A 58 558 58 HOH HOH . F 5 HOH A 59 559 59 HOH HOH . F 5 HOH A 60 560 60 HOH HOH . F 5 HOH A 61 561 61 HOH HOH . F 5 HOH A 62 562 62 HOH HOH . F 5 HOH A 63 563 63 HOH HOH . F 5 HOH A 64 564 64 HOH HOH . F 5 HOH A 65 565 65 HOH HOH . F 5 HOH A 66 566 66 HOH HOH . F 5 HOH A 67 567 67 HOH HOH . F 5 HOH A 68 568 68 HOH HOH . F 5 HOH A 69 569 69 HOH HOH . F 5 HOH A 70 570 70 HOH HOH . F 5 HOH A 71 571 71 HOH HOH . F 5 HOH A 72 572 72 HOH HOH . F 5 HOH A 73 573 73 HOH HOH . F 5 HOH A 74 574 74 HOH HOH . F 5 HOH A 75 575 75 HOH HOH . F 5 HOH A 76 576 76 HOH HOH . F 5 HOH A 77 577 77 HOH HOH . F 5 HOH A 78 578 78 HOH HOH . F 5 HOH A 79 579 79 HOH HOH . F 5 HOH A 80 580 80 HOH HOH . F 5 HOH A 81 581 81 HOH HOH . F 5 HOH A 82 582 82 HOH HOH . F 5 HOH A 83 583 83 HOH HOH . F 5 HOH A 84 584 84 HOH HOH . F 5 HOH A 85 585 85 HOH HOH . F 5 HOH A 86 586 86 HOH HOH . F 5 HOH A 87 587 87 HOH HOH . F 5 HOH A 88 588 88 HOH HOH . F 5 HOH A 89 589 89 HOH HOH . F 5 HOH A 90 590 90 HOH HOH . F 5 HOH A 91 591 91 HOH HOH . F 5 HOH A 92 592 92 HOH HOH . F 5 HOH A 93 593 93 HOH HOH . F 5 HOH A 94 594 94 HOH HOH . F 5 HOH A 95 595 95 HOH HOH . F 5 HOH A 96 596 96 HOH HOH . F 5 HOH A 97 597 97 HOH HOH . F 5 HOH A 98 598 98 HOH HOH . F 5 HOH A 99 599 99 HOH HOH . F 5 HOH A 100 600 100 HOH HOH . F 5 HOH A 101 601 101 HOH HOH . F 5 HOH A 102 602 102 HOH HOH . F 5 HOH A 103 603 103 HOH HOH . F 5 HOH A 104 604 104 HOH HOH . F 5 HOH A 105 605 105 HOH HOH . F 5 HOH A 106 606 106 HOH HOH . F 5 HOH A 107 607 107 HOH HOH . F 5 HOH A 108 608 108 HOH HOH . F 5 HOH A 109 609 109 HOH HOH . F 5 HOH A 110 610 110 HOH HOH . F 5 HOH A 111 611 111 HOH HOH . F 5 HOH A 112 612 112 HOH HOH . F 5 HOH A 113 613 113 HOH HOH . F 5 HOH A 114 614 114 HOH HOH . F 5 HOH A 115 615 115 HOH HOH . F 5 HOH A 116 616 116 HOH HOH . F 5 HOH A 117 617 117 HOH HOH . F 5 HOH A 118 618 118 HOH HOH . F 5 HOH A 119 619 119 HOH HOH . F 5 HOH A 120 620 120 HOH HOH . F 5 HOH A 121 621 121 HOH HOH . F 5 HOH A 122 622 122 HOH HOH . F 5 HOH A 123 623 123 HOH HOH . F 5 HOH A 124 624 124 HOH HOH . F 5 HOH A 125 625 125 HOH HOH . F 5 HOH A 126 626 126 HOH HOH . F 5 HOH A 127 627 127 HOH HOH . F 5 HOH A 128 628 128 HOH HOH . F 5 HOH A 129 629 129 HOH HOH . F 5 HOH A 130 630 130 HOH HOH . F 5 HOH A 131 631 131 HOH HOH . F 5 HOH A 132 632 132 HOH HOH . F 5 HOH A 133 633 133 HOH HOH . F 5 HOH A 134 634 134 HOH HOH . F 5 HOH A 135 635 135 HOH HOH . F 5 HOH A 136 636 136 HOH HOH . F 5 HOH A 137 637 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 10.659 5.266 37.129 1 63.96 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . E 4 9.375 5.44 37.682 1 62.91 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . E 4 11.603 6.251 37.795 1 64.76 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . E 4 11.601 5.943 39.178 1 61.93 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . E 4 13.018 6.126 37.231 1 66.76 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . E 4 13.904 7.052 37.839 1 68.92 ? O3 GOL 404 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 1230 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 6 #