data_4IUN
#
_model_server_result.job_id            jW12HHwDpkYFCsNKlJD4lw 
_model_server_result.datetime_utc      '2024-10-11 10:21:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4iun 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    4IUN 
#
_exptl.entry_id    4IUN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              402.188 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "THYMIDINE-3',5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.94 
_cell.angle_gamma         90 
_cell.entry_id            4IUN 
_cell.length_a            30.858 
_cell.length_b            59.465 
_cell.length_c            34.462 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4IUN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 21 A ASP 21 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? 
metalc ? metalc2 A OD1 ASP 40 A ASP 40 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 B CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? 
metalc ? metalc4 B CA CA . A CA 201 1_555 C O5P THP . A THP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
metalc ? metalc5 B CA CA . A CA 201 1_555 F O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? 
metalc ? metalc6 B CA CA . A CA 201 1_555 F O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? 
metalc ? metalc7 B CA CA . A CA 201 1_555 F O HOH . A HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? 
#
_chem_comp.formula           'C10 H16 N2 O11 P2' 
_chem_comp.formula_weight    402.188 
_chem_comp.id                THP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "THYMIDINE-3',5'-DIPHOSPHATE" 
_chem_comp.type              'dna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P2 O4P THP doub 302 n n 
P2 O5P THP sing 303 n n 
P2 O6P THP sing 304 n n 
P2 O5' THP sing 305 n n 
O5P HOP5 THP sing 306 n n 
O6P HOP6 THP sing 307 n n 
P1 O1P THP doub 308 n n 
P1 O2P THP sing 309 n n 
P1 O3P THP sing 310 n n 
P1 O3' THP sing 311 n n 
O2P HOP2 THP sing 312 n n 
O3P HOP3 THP sing 313 n n 
O5' C5' THP sing 314 n n 
C5' C4' THP sing 315 n n 
C5' "H5'1" THP sing 316 n n 
C5' "H5'2" THP sing 317 n n 
C4' O4' THP sing 318 n n 
C4' C3' THP sing 319 n n 
C4' H4' THP sing 320 n n 
O4' C1' THP sing 321 n n 
C3' O3' THP sing 322 n n 
C3' C2' THP sing 323 n n 
C3' H3' THP sing 324 n n 
C2' C1' THP sing 325 n n 
C2' "H2'1" THP sing 326 n n 
C2' "H2'2" THP sing 327 n n 
C1' N1 THP sing 328 n n 
C1' H1' THP sing 329 n n 
N1 C2 THP sing 330 n n 
N1 C6 THP sing 331 n n 
C2 O2 THP doub 332 n n 
C2 N3 THP sing 333 n n 
N3 C4 THP sing 334 n n 
N3 H3 THP sing 335 n n 
C4 O4 THP doub 336 n n 
C4 C5 THP sing 337 n n 
C5 C5M THP sing 338 n n 
C5 C6 THP doub 339 n n 
C5M H51 THP sing 340 n n 
C5M H52 THP sing 341 n n 
C5M H53 THP sing 342 n n 
C6 H6 THP sing 343 n n 
#
_atom_sites.entry_id                     4IUN 
_atom_sites.fract_transf_matrix[1][1]    0.032407 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004518 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016817 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029298 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 201 1 CA CA . 
C 3 THP A 1 202 1 THP THP . 
D 4 PO4 A 1 203 1 PO4 PO4 . 
E 5 MPD A 1 204 1 MPD MPD . 
F 6 HOH A 1 301 1 HOH HOH . 
F 6 HOH A 2 302 2 HOH HOH . 
F 6 HOH A 3 303 3 HOH HOH . 
F 6 HOH A 4 304 4 HOH HOH . 
F 6 HOH A 5 305 5 HOH HOH . 
F 6 HOH A 6 306 6 HOH HOH . 
F 6 HOH A 7 307 7 HOH HOH . 
F 6 HOH A 8 308 8 HOH HOH . 
F 6 HOH A 9 309 9 HOH HOH . 
F 6 HOH A 10 310 10 HOH HOH . 
F 6 HOH A 11 311 11 HOH HOH . 
F 6 HOH A 12 312 12 HOH HOH . 
F 6 HOH A 13 313 13 HOH HOH . 
F 6 HOH A 14 314 14 HOH HOH . 
F 6 HOH A 15 315 15 HOH HOH . 
F 6 HOH A 16 316 16 HOH HOH . 
F 6 HOH A 17 317 17 HOH HOH . 
F 6 HOH A 18 318 18 HOH HOH . 
F 6 HOH A 19 319 19 HOH HOH . 
F 6 HOH A 20 320 20 HOH HOH . 
F 6 HOH A 21 321 21 HOH HOH . 
F 6 HOH A 22 322 22 HOH HOH . 
F 6 HOH A 23 323 23 HOH HOH . 
F 6 HOH A 24 324 24 HOH HOH . 
F 6 HOH A 25 325 26 HOH HOH . 
F 6 HOH A 26 326 27 HOH HOH . 
F 6 HOH A 27 327 30 HOH HOH . 
F 6 HOH A 28 328 31 HOH HOH . 
F 6 HOH A 29 329 32 HOH HOH . 
F 6 HOH A 30 330 33 HOH HOH . 
F 6 HOH A 31 331 34 HOH HOH . 
F 6 HOH A 32 332 35 HOH HOH . 
F 6 HOH A 33 333 36 HOH HOH . 
F 6 HOH A 34 334 37 HOH HOH . 
F 6 HOH A 35 335 38 HOH HOH . 
F 6 HOH A 36 336 39 HOH HOH . 
F 6 HOH A 37 337 41 HOH HOH . 
F 6 HOH A 38 338 42 HOH HOH . 
F 6 HOH A 39 339 43 HOH HOH . 
F 6 HOH A 40 340 44 HOH HOH . 
F 6 HOH A 41 341 45 HOH HOH . 
F 6 HOH A 42 342 46 HOH HOH . 
F 6 HOH A 43 343 47 HOH HOH . 
F 6 HOH A 44 344 48 HOH HOH . 
F 6 HOH A 45 345 49 HOH HOH . 
F 6 HOH A 46 346 52 HOH HOH . 
F 6 HOH A 47 347 54 HOH HOH . 
F 6 HOH A 48 348 55 HOH HOH . 
F 6 HOH A 49 349 56 HOH HOH . 
F 6 HOH A 50 350 57 HOH HOH . 
F 6 HOH A 51 351 58 HOH HOH . 
F 6 HOH A 52 352 60 HOH HOH . 
F 6 HOH A 53 353 62 HOH HOH . 
F 6 HOH A 54 354 67 HOH HOH . 
F 6 HOH A 55 355 68 HOH HOH . 
F 6 HOH A 56 356 69 HOH HOH . 
F 6 HOH A 57 357 70 HOH HOH . 
F 6 HOH A 58 358 71 HOH HOH . 
F 6 HOH A 59 359 72 HOH HOH . 
F 6 HOH A 60 360 73 HOH HOH . 
F 6 HOH A 61 361 77 HOH HOH . 
F 6 HOH A 62 362 78 HOH HOH . 
F 6 HOH A 63 363 79 HOH HOH . 
F 6 HOH A 64 364 80 HOH HOH . 
F 6 HOH A 65 365 81 HOH HOH . 
F 6 HOH A 66 366 85 HOH HOH . 
F 6 HOH A 67 367 87 HOH HOH . 
F 6 HOH A 68 368 90 HOH HOH . 
F 6 HOH A 69 369 91 HOH HOH . 
F 6 HOH A 70 370 98 HOH HOH . 
F 6 HOH A 71 371 99 HOH HOH . 
F 6 HOH A 72 372 101 HOH HOH . 
F 6 HOH A 73 373 103 HOH HOH . 
F 6 HOH A 74 374 104 HOH HOH . 
F 6 HOH A 75 375 105 HOH HOH . 
F 6 HOH A 76 376 106 HOH HOH . 
F 6 HOH A 77 377 107 HOH HOH . 
F 6 HOH A 78 378 108 HOH HOH . 
F 6 HOH A 79 379 109 HOH HOH . 
F 6 HOH A 80 380 110 HOH HOH . 
F 6 HOH A 81 381 111 HOH HOH . 
F 6 HOH A 82 382 112 HOH HOH . 
F 6 HOH A 83 383 113 HOH HOH . 
F 6 HOH A 84 384 116 HOH HOH . 
F 6 HOH A 85 385 117 HOH HOH . 
F 6 HOH A 86 386 119 HOH HOH . 
F 6 HOH A 87 387 124 HOH HOH . 
F 6 HOH A 88 388 125 HOH HOH . 
F 6 HOH A 89 389 129 HOH HOH . 
F 6 HOH A 90 390 131 HOH HOH . 
F 6 HOH A 91 391 132 HOH HOH . 
F 6 HOH A 92 392 133 HOH HOH . 
F 6 HOH A 93 393 134 HOH HOH . 
F 6 HOH A 94 394 135 HOH HOH . 
F 6 HOH A 95 395 136 HOH HOH . 
F 6 HOH A 96 396 137 HOH HOH . 
F 6 HOH A 97 397 138 HOH HOH . 
F 6 HOH A 98 398 142 HOH HOH . 
F 6 HOH A 99 399 143 HOH HOH . 
F 6 HOH A 100 400 144 HOH HOH . 
F 6 HOH A 101 401 148 HOH HOH . 
F 6 HOH A 102 402 152 HOH HOH . 
F 6 HOH A 103 403 153 HOH HOH . 
F 6 HOH A 104 404 174 HOH HOH . 
F 6 HOH A 105 405 175 HOH HOH . 
F 6 HOH A 106 406 177 HOH HOH . 
F 6 HOH A 107 407 178 HOH HOH . 
F 6 HOH A 108 408 179 HOH HOH . 
F 6 HOH A 109 409 180 HOH HOH . 
F 6 HOH A 110 410 181 HOH HOH . 
F 6 HOH A 111 411 182 HOH HOH . 
F 6 HOH A 112 412 184 HOH HOH . 
F 6 HOH A 113 413 185 HOH HOH . 
F 6 HOH A 114 414 186 HOH HOH . 
F 6 HOH A 115 415 187 HOH HOH . 
F 6 HOH A 116 416 188 HOH HOH . 
F 6 HOH A 117 417 189 HOH HOH . 
F 6 HOH A 118 418 192 HOH HOH . 
F 6 HOH A 119 419 195 HOH HOH . 
F 6 HOH A 120 420 200 HOH HOH . 
F 6 HOH A 121 421 201 HOH HOH . 
F 6 HOH A 122 422 204 HOH HOH . 
F 6 HOH A 123 423 205 HOH HOH . 
F 6 HOH A 124 424 206 HOH HOH . 
F 6 HOH A 125 425 216 HOH HOH . 
F 6 HOH A 126 426 224 HOH HOH . 
F 6 HOH A 127 427 225 HOH HOH . 
F 6 HOH A 128 428 227 HOH HOH . 
F 6 HOH A 129 429 228 HOH HOH . 
F 6 HOH A 130 430 229 HOH HOH . 
F 6 HOH A 131 431 230 HOH HOH . 
F 6 HOH A 132 432 232 HOH HOH . 
F 6 HOH A 133 433 241 HOH HOH . 
F 6 HOH A 134 434 243 HOH HOH . 
F 6 HOH A 135 435 244 HOH HOH . 
F 6 HOH A 136 436 245 HOH HOH . 
F 6 HOH A 137 437 275 HOH HOH . 
F 6 HOH A 138 438 276 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P2 THP . . . C 3 17.91 8.794 6.45 1 10 ? P2 THP 202 A 1 
HETATM 2 O O4P THP . . . C 3 17.773 7.279 6.424 1 10.8 ? O4P THP 202 A 1 
HETATM 3 O O5P THP . . . C 3 16.662 9.568 6.871 1 10.02 ? O5P THP 202 A 1 
HETATM 4 O O6P THP . . . C 3 19.065 9.248 7.36 1 12.88 ? O6P THP 202 A 1 
HETATM 5 P P1 THP . . . C 3 20.742 13.371 2.004 1 20.68 ? P1 THP 202 A 1 
HETATM 6 O O1P THP . . . C 3 20.046 14.04 0.839 1 24.92 ? O1P THP 202 A 1 
HETATM 7 O O2P THP . . . C 3 22.273 13.093 1.788 1 18.94 ? O2P THP 202 A 1 
HETATM 8 O O3P THP . . . C 3 20.514 14.033 3.269 1 17.53 ? O3P THP 202 A 1 
HETATM 9 O O5' THP . . . C 3 18.184 9.18 4.963 1 10.96 ? O5' THP 202 A 1 
HETATM 10 C C5' THP . . . C 3 18.145 10.521 4.445 1 9.16 ? C5' THP 202 A 1 
HETATM 11 C C4' THP . . . C 3 18.623 10.445 3.056 1 12.13 ? C4' THP 202 A 1 
HETATM 12 O O4' THP . . . C 3 17.665 9.747 2.32 1 11.06 ? O4' THP 202 A 1 
HETATM 13 C C3' THP . . . C 3 18.758 11.78 2.43 1 13.7 ? C3' THP 202 A 1 
HETATM 14 O O3' THP . . . C 3 20.141 11.877 2.064 1 17.1 ? O3' THP 202 A 1 
HETATM 15 C C2' THP . . . C 3 17.973 11.671 1.16 1 12.35 ? C2' THP 202 A 1 
HETATM 16 C C1' THP . . . C 3 17.652 10.206 1.029 1 11.31 ? C1' THP 202 A 1 
HETATM 17 N N1 THP . . . C 3 16.328 10.008 0.475 1 10.36 ? N1 THP 202 A 1 
HETATM 18 C C2 THP . . . C 3 16.145 10.179 -0.873 1 9.09 ? C2 THP 202 A 1 
HETATM 19 O O2 THP . . . C 3 17.099 10.521 -1.62 1 11.79 ? O2 THP 202 A 1 
HETATM 20 N N3 THP . . . C 3 14.942 9.975 -1.433 1 7.89 ? N3 THP 202 A 1 
HETATM 21 C C4 THP . . . C 3 13.88 9.663 -0.692 1 7.84 ? C4 THP 202 A 1 
HETATM 22 O O4 THP . . . C 3 12.803 9.499 -1.238 1 7.87 ? O4 THP 202 A 1 
HETATM 23 C C5 THP . . . C 3 14.035 9.387 0.726 1 7.27 ? C5 THP 202 A 1 
HETATM 24 C C5M THP . . . C 3 12.885 8.984 1.573 1 8.06 ? C5M THP 202 A 1 
HETATM 25 C C6 THP . . . C 3 15.299 9.614 1.255 1 8.68 ? C6 THP 202 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#