data_4IUQ
#
_model_server_result.job_id            JGY5g26ADHd7AWr22Cx4NA 
_model_server_result.datetime_utc      '2024-11-13 12:18:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4iuq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4IUQ 
#
_exptl.entry_id    4IUQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              480.546 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CYMAL-4 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4IUQ 
_cell.length_a            54.708 
_cell.length_b            117.691 
_cell.length_c            53.409 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4IUQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 68 B CYS 191 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc2 A NE2 HIS 102 B HIS 225 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc3 A SG CYS 107 B CYS 230 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc4 A SG CYS 109 B CYS 232 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? 
metalc ? metalc5 B SG CYS 68 A CYS 191 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc6 B NE2 HIS 102 A HIS 225 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc7 B SG CYS 107 A CYS 230 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc8 B SG CYS 109 A CYS 232 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
#
_chem_comp.formula           'C22 H40 O11' 
_chem_comp.formula_weight    480.546 
_chem_comp.id                CVM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CYMAL-4 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 CVM sing 70 n n 
C1 O12 CVM sing 71 n n 
C2 C3 CVM sing 72 n n 
C3 C4 CVM sing 73 n n 
C4 C6 CVM sing 74 n n 
C6 C7 CVM sing 75 n n 
C6 C11 CVM sing 76 n n 
C7 C8 CVM sing 77 n n 
C8 C9 CVM sing 78 n n 
C9 C10 CVM sing 79 n n 
C10 C11 CVM sing 80 n n 
O12 C13 CVM sing 81 n n 
C13 O14 CVM sing 82 n n 
C13 C18 CVM sing 83 n n 
O14 C15 CVM sing 84 n n 
C15 C16 CVM sing 85 n n 
C15 C19 CVM sing 86 n n 
C16 C17 CVM sing 87 n n 
C16 O23 CVM sing 88 n n 
C17 C18 CVM sing 89 n n 
C17 O21 CVM sing 90 n n 
C18 O22 CVM sing 91 n n 
C19 O20 CVM sing 92 n n 
O23 C24 CVM sing 93 n n 
C24 O25 CVM sing 94 n n 
C24 C29 CVM sing 95 n n 
O25 C26 CVM sing 96 n n 
C26 C27 CVM sing 97 n n 
C26 C30 CVM sing 98 n n 
C27 C28 CVM sing 99 n n 
C27 O32 CVM sing 100 n n 
C28 C29 CVM sing 101 n n 
C28 O33 CVM sing 102 n n 
C29 O34 CVM sing 103 n n 
C30 O31 CVM sing 104 n n 
C1 H11C CVM sing 105 n n 
C1 H12C CVM sing 106 n n 
C2 H21C CVM sing 107 n n 
C2 H22C CVM sing 108 n n 
C3 H31C CVM sing 109 n n 
C3 H32C CVM sing 110 n n 
C4 H41C CVM sing 111 n n 
C4 H42C CVM sing 112 n n 
C6 H6 CVM sing 113 n n 
C7 H71C CVM sing 114 n n 
C7 H72C CVM sing 115 n n 
C11 H111 CVM sing 116 n n 
C11 H112 CVM sing 117 n n 
C8 H81C CVM sing 118 n n 
C8 H82C CVM sing 119 n n 
C9 H91C CVM sing 120 n n 
C9 H92C CVM sing 121 n n 
C10 H101 CVM sing 122 n n 
C10 H102 CVM sing 123 n n 
C13 H13 CVM sing 124 n n 
C18 H18 CVM sing 125 n n 
C15 H15 CVM sing 126 n n 
C16 H16 CVM sing 127 n n 
C19 H191 CVM sing 128 n n 
C19 H192 CVM sing 129 n n 
C17 H17 CVM sing 130 n n 
O21 H21 CVM sing 131 n n 
O22 H22 CVM sing 132 n n 
O20 H20 CVM sing 133 n n 
C24 H24 CVM sing 134 n n 
C29 H29 CVM sing 135 n n 
C26 H26 CVM sing 136 n n 
C27 H27 CVM sing 137 n n 
C30 H301 CVM sing 138 n n 
C30 H302 CVM sing 139 n n 
C28 H28 CVM sing 140 n n 
O32 H32 CVM sing 141 n n 
O33 H33 CVM sing 142 n n 
O34 H34 CVM sing 143 n n 
O31 H31 CVM sing 144 n n 
#
_atom_sites.entry_id                     4IUQ 
_atom_sites.fract_transf_matrix[1][1]    0.018279 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008497 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018723 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN B 1 301 300 ZN ZN . 
D 3 CVM B 1 302 280 CVM CVM . 
E 2 ZN A 1 301 300 ZN ZN . 
F 3 CVM A 1 302 280 CVM CVM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CVM . . . D 3 17.466 24.863 10.241 1 71.14 ? C1 CVM 302 B 1 
HETATM 2 C C2 CVM . . . D 3 16.067 25.193 10.63 1 58.54 ? C2 CVM 302 B 1 
HETATM 3 C C3 CVM . . . D 3 15.829 26.654 10.632 1 57.11 ? C3 CVM 302 B 1 
HETATM 4 C C4 CVM . . . D 3 15.675 27.007 12.059 1 53.96 ? C4 CVM 302 B 1 
HETATM 5 C C6 CVM . . . D 3 14.894 28.246 12.158 1 58.36 ? C6 CVM 302 B 1 
HETATM 6 C C7 CVM . . . D 3 15.446 29.012 13.294 1 53.63 ? C7 CVM 302 B 1 
HETATM 7 C C8 CVM . . . D 3 15.765 30.378 12.802 1 49.81 ? C8 CVM 302 B 1 
HETATM 8 C C9 CVM . . . D 3 14.571 30.972 12.164 1 42.02 ? C9 CVM 302 B 1 
HETATM 9 C C10 CVM . . . D 3 14.418 30.277 10.869 1 48.71 ? C10 CVM 302 B 1 
HETATM 10 C C11 CVM . . . D 3 15.181 28.999 10.91 1 54.98 ? C11 CVM 302 B 1 
HETATM 11 O O12 CVM . . . D 3 17.417 23.52 10.552 1 88.66 ? O12 CVM 302 B 1 
HETATM 12 C C13 CVM . . . D 3 18.35 22.796 9.819 1 106.42 ? C13 CVM 302 B 1 
HETATM 13 O O14 CVM . . . D 3 17.885 22.868 8.541 1 110.69 ? O14 CVM 302 B 1 
HETATM 14 C C15 CVM . . . D 3 18.694 22.012 7.83 1 112.08 ? C15 CVM 302 B 1 
HETATM 15 C C16 CVM . . . D 3 18.182 20.646 7.921 1 116.66 ? C16 CVM 302 B 1 
HETATM 16 C C17 CVM . . . D 3 18.746 20.338 9.267 1 117.19 ? C17 CVM 302 B 1 
HETATM 17 C C18 CVM . . . D 3 18.32 21.345 10.3 1 114.65 ? C18 CVM 302 B 1 
HETATM 18 C C19 CVM . . . D 3 18.489 22.776 6.624 1 107.34 ? C19 CVM 302 B 1 
HETATM 19 O O20 CVM . . . D 3 19.066 24.03 6.948 1 102.49 ? O20 CVM 302 B 1 
HETATM 20 O O21 CVM . . . D 3 18.197 19.143 9.718 1 120.41 ? O21 CVM 302 B 1 
HETATM 21 O O22 CVM . . . D 3 19.243 21.169 11.361 1 116.01 ? O22 CVM 302 B 1 
HETATM 22 O O23 CVM . . . D 3 18.867 19.855 7.033 1 121.69 ? O23 CVM 302 B 1 
HETATM 23 C C24 CVM . . . D 3 19.884 19.131 7.676 1 126.04 ? C24 CVM 302 B 1 
HETATM 24 O O25 CVM . . . D 3 19.319 17.95 8.116 1 130.62 ? O25 CVM 302 B 1 
HETATM 25 C C26 CVM . . . D 3 20.054 17.329 9.182 1 129.06 ? C26 CVM 302 B 1 
HETATM 26 C C27 CVM . . . D 3 21.488 17.444 8.804 1 126.67 ? C27 CVM 302 B 1 
HETATM 27 C C28 CVM . . . D 3 21.571 17.366 7.293 1 125.45 ? C28 CVM 302 B 1 
HETATM 28 C C29 CVM . . . D 3 20.99 18.639 6.726 1 121.94 ? C29 CVM 302 B 1 
HETATM 29 C C30 CVM . . . D 3 19.955 17.932 10.572 1 128.22 ? C30 CVM 302 B 1 
HETATM 30 O O31 CVM . . . D 3 20.322 19.298 10.576 1 126.74 ? O31 CVM 302 B 1 
HETATM 31 O O32 CVM . . . D 3 22.136 16.361 9.405 1 122.52 ? O32 CVM 302 B 1 
HETATM 32 O O33 CVM . . . D 3 22.919 17.28 6.882 1 123.87 ? O33 CVM 302 B 1 
HETATM 33 O O34 CVM . . . D 3 20.533 18.397 5.401 1 111.44 ? O34 CVM 302 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#