data_4IUQ # _model_server_result.job_id bn81CVtuvhh6BxWQYuxi7Q _model_server_result.datetime_utc '2024-11-28 21:12:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4iuq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4IUQ # _exptl.entry_id 4IUQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 480.546 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYMAL-4 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IUQ _cell.length_a 54.708 _cell.length_b 117.691 _cell.length_c 53.409 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IUQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 68 B CYS 191 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc2 A NE2 HIS 102 B HIS 225 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc3 A SG CYS 107 B CYS 230 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc4 A SG CYS 109 B CYS 232 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc5 B SG CYS 68 A CYS 191 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc6 B NE2 HIS 102 A HIS 225 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc7 B SG CYS 107 A CYS 230 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc8 B SG CYS 109 A CYS 232 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? # _chem_comp.formula 'C22 H40 O11' _chem_comp.formula_weight 480.546 _chem_comp.id CVM _chem_comp.mon_nstd_flag . _chem_comp.name CYMAL-4 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CVM sing 70 n n C1 O12 CVM sing 71 n n C2 C3 CVM sing 72 n n C3 C4 CVM sing 73 n n C4 C6 CVM sing 74 n n C6 C7 CVM sing 75 n n C6 C11 CVM sing 76 n n C7 C8 CVM sing 77 n n C8 C9 CVM sing 78 n n C9 C10 CVM sing 79 n n C10 C11 CVM sing 80 n n O12 C13 CVM sing 81 n n C13 O14 CVM sing 82 n n C13 C18 CVM sing 83 n n O14 C15 CVM sing 84 n n C15 C16 CVM sing 85 n n C15 C19 CVM sing 86 n n C16 C17 CVM sing 87 n n C16 O23 CVM sing 88 n n C17 C18 CVM sing 89 n n C17 O21 CVM sing 90 n n C18 O22 CVM sing 91 n n C19 O20 CVM sing 92 n n O23 C24 CVM sing 93 n n C24 O25 CVM sing 94 n n C24 C29 CVM sing 95 n n O25 C26 CVM sing 96 n n C26 C27 CVM sing 97 n n C26 C30 CVM sing 98 n n C27 C28 CVM sing 99 n n C27 O32 CVM sing 100 n n C28 C29 CVM sing 101 n n C28 O33 CVM sing 102 n n C29 O34 CVM sing 103 n n C30 O31 CVM sing 104 n n C1 H11C CVM sing 105 n n C1 H12C CVM sing 106 n n C2 H21C CVM sing 107 n n C2 H22C CVM sing 108 n n C3 H31C CVM sing 109 n n C3 H32C CVM sing 110 n n C4 H41C CVM sing 111 n n C4 H42C CVM sing 112 n n C6 H6 CVM sing 113 n n C7 H71C CVM sing 114 n n C7 H72C CVM sing 115 n n C11 H111 CVM sing 116 n n C11 H112 CVM sing 117 n n C8 H81C CVM sing 118 n n C8 H82C CVM sing 119 n n C9 H91C CVM sing 120 n n C9 H92C CVM sing 121 n n C10 H101 CVM sing 122 n n C10 H102 CVM sing 123 n n C13 H13 CVM sing 124 n n C18 H18 CVM sing 125 n n C15 H15 CVM sing 126 n n C16 H16 CVM sing 127 n n C19 H191 CVM sing 128 n n C19 H192 CVM sing 129 n n C17 H17 CVM sing 130 n n O21 H21 CVM sing 131 n n O22 H22 CVM sing 132 n n O20 H20 CVM sing 133 n n C24 H24 CVM sing 134 n n C29 H29 CVM sing 135 n n C26 H26 CVM sing 136 n n C27 H27 CVM sing 137 n n C30 H301 CVM sing 138 n n C30 H302 CVM sing 139 n n C28 H28 CVM sing 140 n n O32 H32 CVM sing 141 n n O33 H33 CVM sing 142 n n O34 H34 CVM sing 143 n n O31 H31 CVM sing 144 n n # _atom_sites.entry_id 4IUQ _atom_sites.fract_transf_matrix[1][1] 0.018279 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN B 1 301 300 ZN ZN . D 3 CVM B 1 302 280 CVM CVM . E 2 ZN A 1 301 300 ZN ZN . F 3 CVM A 1 302 280 CVM CVM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CVM . . . D 3 17.466 24.863 10.241 1 71.14 ? C1 CVM 302 B 1 HETATM 2 C C2 CVM . . . D 3 16.067 25.193 10.63 1 58.54 ? C2 CVM 302 B 1 HETATM 3 C C3 CVM . . . D 3 15.829 26.654 10.632 1 57.11 ? C3 CVM 302 B 1 HETATM 4 C C4 CVM . . . D 3 15.675 27.007 12.059 1 53.96 ? C4 CVM 302 B 1 HETATM 5 C C6 CVM . . . D 3 14.894 28.246 12.158 1 58.36 ? C6 CVM 302 B 1 HETATM 6 C C7 CVM . . . D 3 15.446 29.012 13.294 1 53.63 ? C7 CVM 302 B 1 HETATM 7 C C8 CVM . . . D 3 15.765 30.378 12.802 1 49.81 ? C8 CVM 302 B 1 HETATM 8 C C9 CVM . . . D 3 14.571 30.972 12.164 1 42.02 ? C9 CVM 302 B 1 HETATM 9 C C10 CVM . . . D 3 14.418 30.277 10.869 1 48.71 ? C10 CVM 302 B 1 HETATM 10 C C11 CVM . . . D 3 15.181 28.999 10.91 1 54.98 ? C11 CVM 302 B 1 HETATM 11 O O12 CVM . . . D 3 17.417 23.52 10.552 1 88.66 ? O12 CVM 302 B 1 HETATM 12 C C13 CVM . . . D 3 18.35 22.796 9.819 1 106.42 ? C13 CVM 302 B 1 HETATM 13 O O14 CVM . . . D 3 17.885 22.868 8.541 1 110.69 ? O14 CVM 302 B 1 HETATM 14 C C15 CVM . . . D 3 18.694 22.012 7.83 1 112.08 ? C15 CVM 302 B 1 HETATM 15 C C16 CVM . . . D 3 18.182 20.646 7.921 1 116.66 ? C16 CVM 302 B 1 HETATM 16 C C17 CVM . . . D 3 18.746 20.338 9.267 1 117.19 ? C17 CVM 302 B 1 HETATM 17 C C18 CVM . . . D 3 18.32 21.345 10.3 1 114.65 ? C18 CVM 302 B 1 HETATM 18 C C19 CVM . . . D 3 18.489 22.776 6.624 1 107.34 ? C19 CVM 302 B 1 HETATM 19 O O20 CVM . . . D 3 19.066 24.03 6.948 1 102.49 ? O20 CVM 302 B 1 HETATM 20 O O21 CVM . . . D 3 18.197 19.143 9.718 1 120.41 ? O21 CVM 302 B 1 HETATM 21 O O22 CVM . . . D 3 19.243 21.169 11.361 1 116.01 ? O22 CVM 302 B 1 HETATM 22 O O23 CVM . . . D 3 18.867 19.855 7.033 1 121.69 ? O23 CVM 302 B 1 HETATM 23 C C24 CVM . . . D 3 19.884 19.131 7.676 1 126.04 ? C24 CVM 302 B 1 HETATM 24 O O25 CVM . . . D 3 19.319 17.95 8.116 1 130.62 ? O25 CVM 302 B 1 HETATM 25 C C26 CVM . . . D 3 20.054 17.329 9.182 1 129.06 ? C26 CVM 302 B 1 HETATM 26 C C27 CVM . . . D 3 21.488 17.444 8.804 1 126.67 ? C27 CVM 302 B 1 HETATM 27 C C28 CVM . . . D 3 21.571 17.366 7.293 1 125.45 ? C28 CVM 302 B 1 HETATM 28 C C29 CVM . . . D 3 20.99 18.639 6.726 1 121.94 ? C29 CVM 302 B 1 HETATM 29 C C30 CVM . . . D 3 19.955 17.932 10.572 1 128.22 ? C30 CVM 302 B 1 HETATM 30 O O31 CVM . . . D 3 20.322 19.298 10.576 1 126.74 ? O31 CVM 302 B 1 HETATM 31 O O32 CVM . . . D 3 22.136 16.361 9.405 1 122.52 ? O32 CVM 302 B 1 HETATM 32 O O33 CVM . . . D 3 22.919 17.28 6.882 1 123.87 ? O33 CVM 302 B 1 HETATM 33 O O34 CVM . . . D 3 20.533 18.397 5.401 1 111.44 ? O34 CVM 302 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #