data_4IUV # _model_server_result.job_id CS-rm7ptU5wIZ34RMPqXFw _model_server_result.datetime_utc '2024-11-29 02:45:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4iuv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 4IUV # _exptl.entry_id 4IUV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 480.546 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYMAL-4 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IUV _cell.length_a 118.355 _cell.length_b 54.533 _cell.length_c 53.109 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IUV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H 1 1 B,C,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C THR 3 C THR 3 1_555 C N MLZ 4 C MLZ 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 C C MLZ 4 C MLZ 4 1_555 C N GLN 5 C GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 C C ARG 8 C ARG 8 1_555 C N MLZ 9 C MLZ 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 C C MLZ 9 C MLZ 9 1_555 C N SER 10 C SER 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A SG CYS 68 B CYS 191 1_555 D ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc2 A NE2 HIS 102 B HIS 225 1_555 D ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc3 A SG CYS 107 B CYS 230 1_555 D ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc4 A SG CYS 109 B CYS 232 1_555 D ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc5 B SG CYS 68 A CYS 191 1_555 F ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc6 B NE2 HIS 102 A HIS 225 1_555 F ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc7 B SG CYS 107 A CYS 230 1_555 F ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc8 B SG CYS 109 A CYS 232 1_555 F ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? # _chem_comp.formula 'C22 H40 O11' _chem_comp.formula_weight 480.546 _chem_comp.id CVM _chem_comp.mon_nstd_flag . _chem_comp.name CYMAL-4 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CVM sing 70 n n C1 O12 CVM sing 71 n n C2 C3 CVM sing 72 n n C3 C4 CVM sing 73 n n C4 C6 CVM sing 74 n n C6 C7 CVM sing 75 n n C6 C11 CVM sing 76 n n C7 C8 CVM sing 77 n n C8 C9 CVM sing 78 n n C9 C10 CVM sing 79 n n C10 C11 CVM sing 80 n n O12 C13 CVM sing 81 n n C13 O14 CVM sing 82 n n C13 C18 CVM sing 83 n n O14 C15 CVM sing 84 n n C15 C16 CVM sing 85 n n C15 C19 CVM sing 86 n n C16 C17 CVM sing 87 n n C16 O23 CVM sing 88 n n C17 C18 CVM sing 89 n n C17 O21 CVM sing 90 n n C18 O22 CVM sing 91 n n C19 O20 CVM sing 92 n n O23 C24 CVM sing 93 n n C24 O25 CVM sing 94 n n C24 C29 CVM sing 95 n n O25 C26 CVM sing 96 n n C26 C27 CVM sing 97 n n C26 C30 CVM sing 98 n n C27 C28 CVM sing 99 n n C27 O32 CVM sing 100 n n C28 C29 CVM sing 101 n n C28 O33 CVM sing 102 n n C29 O34 CVM sing 103 n n C30 O31 CVM sing 104 n n C1 H11C CVM sing 105 n n C1 H12C CVM sing 106 n n C2 H21C CVM sing 107 n n C2 H22C CVM sing 108 n n C3 H31C CVM sing 109 n n C3 H32C CVM sing 110 n n C4 H41C CVM sing 111 n n C4 H42C CVM sing 112 n n C6 H6 CVM sing 113 n n C7 H71C CVM sing 114 n n C7 H72C CVM sing 115 n n C11 H111 CVM sing 116 n n C11 H112 CVM sing 117 n n C8 H81C CVM sing 118 n n C8 H82C CVM sing 119 n n C9 H91C CVM sing 120 n n C9 H92C CVM sing 121 n n C10 H101 CVM sing 122 n n C10 H102 CVM sing 123 n n C13 H13 CVM sing 124 n n C18 H18 CVM sing 125 n n C15 H15 CVM sing 126 n n C16 H16 CVM sing 127 n n C19 H191 CVM sing 128 n n C19 H192 CVM sing 129 n n C17 H17 CVM sing 130 n n O21 H21 CVM sing 131 n n O22 H22 CVM sing 132 n n O20 H20 CVM sing 133 n n C24 H24 CVM sing 134 n n C29 H29 CVM sing 135 n n C26 H26 CVM sing 136 n n C27 H27 CVM sing 137 n n C30 H301 CVM sing 138 n n C30 H302 CVM sing 139 n n C28 H28 CVM sing 140 n n O32 H32 CVM sing 141 n n O33 H33 CVM sing 142 n n O34 H34 CVM sing 143 n n O31 H31 CVM sing 144 n n # _atom_sites.entry_id 4IUV _atom_sites.fract_transf_matrix[1][1] 0.008449 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018338 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN B 1 301 300 ZN ZN . E 4 CVM B 1 302 280 CVM DRG . F 3 ZN A 1 301 300 ZN ZN . G 4 CVM A 1 302 280 CVM DRG . H 5 HOH B 1 401 1 HOH HOH . H 5 HOH B 2 402 2 HOH HOH . H 5 HOH B 3 403 3 HOH HOH . H 5 HOH B 4 404 6 HOH HOH . H 5 HOH B 5 405 7 HOH HOH . H 5 HOH B 6 406 9 HOH HOH . H 5 HOH B 7 407 10 HOH HOH . H 5 HOH B 8 408 11 HOH HOH . H 5 HOH B 9 409 12 HOH HOH . H 5 HOH B 10 410 14 HOH HOH . H 5 HOH B 11 411 15 HOH HOH . H 5 HOH B 12 412 16 HOH HOH . H 5 HOH B 13 413 21 HOH HOH . H 5 HOH B 14 414 24 HOH HOH . H 5 HOH B 15 415 27 HOH HOH . H 5 HOH B 16 416 28 HOH HOH . H 5 HOH B 17 417 30 HOH HOH . H 5 HOH B 18 418 31 HOH HOH . H 5 HOH B 19 419 34 HOH HOH . H 5 HOH B 20 420 37 HOH HOH . H 5 HOH B 21 421 38 HOH HOH . H 5 HOH B 22 422 42 HOH HOH . H 5 HOH B 23 423 43 HOH HOH . I 5 HOH A 1 401 4 HOH HOH . I 5 HOH A 2 402 5 HOH HOH . I 5 HOH A 3 403 8 HOH HOH . I 5 HOH A 4 404 13 HOH HOH . I 5 HOH A 5 405 17 HOH HOH . I 5 HOH A 6 406 18 HOH HOH . I 5 HOH A 7 407 19 HOH HOH . I 5 HOH A 8 408 20 HOH HOH . I 5 HOH A 9 409 22 HOH HOH . I 5 HOH A 10 410 23 HOH HOH . I 5 HOH A 11 411 25 HOH HOH . I 5 HOH A 12 412 26 HOH HOH . I 5 HOH A 13 413 29 HOH HOH . I 5 HOH A 14 414 32 HOH HOH . I 5 HOH A 15 415 33 HOH HOH . I 5 HOH A 16 416 35 HOH HOH . I 5 HOH A 17 417 36 HOH HOH . I 5 HOH A 18 418 39 HOH HOH . I 5 HOH A 19 419 40 HOH HOH . I 5 HOH A 20 420 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CVM . . . E 4 -24.931 -10.188 10.21 1 73.57 ? C1 CVM 302 B 1 HETATM 2 C C2 CVM . . . E 4 -25.514 -10.591 11.552 1 56.52 ? C2 CVM 302 B 1 HETATM 3 C C3 CVM . . . E 4 -26.222 -11.918 11.455 1 50.49 ? C3 CVM 302 B 1 HETATM 4 C C4 CVM . . . E 4 -27.564 -11.761 10.786 1 51.36 ? C4 CVM 302 B 1 HETATM 5 C C6 CVM . . . E 4 -28.647 -12.217 11.722 1 58.3 ? C6 CVM 302 B 1 HETATM 6 C C7 CVM . . . E 4 -29.827 -12.719 10.929 1 74.33 ? C7 CVM 302 B 1 HETATM 7 C C8 CVM . . . E 4 -31.104 -12.652 11.754 1 68.1 ? C8 CVM 302 B 1 HETATM 8 C C9 CVM . . . E 4 -30.833 -12.719 13.239 1 62.09 ? C9 CVM 302 B 1 HETATM 9 C C10 CVM . . . E 4 -29.989 -11.537 13.67 1 57.88 ? C10 CVM 302 B 1 HETATM 10 C C11 CVM . . . E 4 -29.105 -11.043 12.541 1 56.66 ? C11 CVM 302 B 1 HETATM 11 O O12 CVM . . . E 4 -23.539 -10.377 10.305 1 88.95 ? O12 CVM 302 B 1 HETATM 12 C C13 CVM . . . E 4 -22.849 -9.271 9.786 1 97.7 ? C13 CVM 302 B 1 HETATM 13 O O14 CVM . . . E 4 -22.829 -9.551 8.417 1 98.73 ? O14 CVM 302 B 1 HETATM 14 C C15 CVM . . . E 4 -21.994 -8.593 7.782 1 99.61 ? C15 CVM 302 B 1 HETATM 15 C C16 CVM . . . E 4 -20.554 -8.965 8.043 1 96.07 ? C16 CVM 302 B 1 HETATM 16 C C17 CVM . . . E 4 -20.524 -8.399 9.439 1 99.61 ? C17 CVM 302 B 1 HETATM 17 C C18 CVM . . . E 4 -21.422 -9.223 10.339 1 102.05 ? C18 CVM 302 B 1 HETATM 18 C C19 CVM . . . E 4 -22.467 -8.584 6.34 1 99.28 ? C19 CVM 302 B 1 HETATM 19 O O20 CVM . . . E 4 -23.812 -8.108 6.362 1 98.71 ? O20 CVM 302 B 1 HETATM 20 O O21 CVM . . . E 4 -19.197 -8.385 9.956 1 98.89 ? O21 CVM 302 B 1 HETATM 21 O O22 CVM . . . E 4 -21.412 -8.624 11.626 1 104.02 ? O22 CVM 302 B 1 HETATM 22 O O23 CVM . . . E 4 -19.595 -8.246 7.294 1 87.1 ? O23 CVM 302 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 22 #