data_4IVM # _model_server_result.job_id gJDDvX2hheA1v9qHZIjQrQ _model_server_result.datetime_utc '2024-12-26 14:09:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ivm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4IVM # _exptl.entry_id 4IVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IVM _cell.length_a 136.098 _cell.length_b 136.098 _cell.length_c 158.361 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 78.576217 105.574 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 115 n n PA O2A FAD sing 116 n n PA O5B FAD sing 117 n n PA O3P FAD sing 118 n n O2A HOA2 FAD sing 119 n n O5B C5B FAD sing 120 n n C5B C4B FAD sing 121 n n C5B H51A FAD sing 122 n n C5B H52A FAD sing 123 n n C4B O4B FAD sing 124 n n C4B C3B FAD sing 125 n n C4B H4B FAD sing 126 n n O4B C1B FAD sing 127 n n C3B O3B FAD sing 128 n n C3B C2B FAD sing 129 n n C3B H3B FAD sing 130 n n O3B HO3A FAD sing 131 n n C2B O2B FAD sing 132 n n C2B C1B FAD sing 133 n n C2B H2B FAD sing 134 n n O2B HO2A FAD sing 135 n n C1B N9A FAD sing 136 n n C1B H1B FAD sing 137 n n N9A C8A FAD sing 138 n y N9A C4A FAD sing 139 n y C8A N7A FAD doub 140 n y C8A H8A FAD sing 141 n n N7A C5A FAD sing 142 n y C5A C6A FAD sing 143 n y C5A C4A FAD doub 144 n y C6A N6A FAD sing 145 n n C6A N1A FAD doub 146 n y N6A H61A FAD sing 147 n n N6A H62A FAD sing 148 n n N1A C2A FAD sing 149 n y C2A N3A FAD doub 150 n y C2A H2A FAD sing 151 n n N3A C4A FAD sing 152 n y N1 C2 FAD sing 153 n n N1 C10 FAD doub 154 n n C2 O2 FAD doub 155 n n C2 N3 FAD sing 156 n n N3 C4 FAD sing 157 n n N3 HN3 FAD sing 158 n n C4 O4 FAD doub 159 n n C4 C4X FAD sing 160 n n C4X N5 FAD doub 161 n n C4X C10 FAD sing 162 n n N5 C5X FAD sing 163 n n C5X C6 FAD doub 164 n y C5X C9A FAD sing 165 n y C6 C7 FAD sing 166 n y C6 H6 FAD sing 167 n n C7 C7M FAD sing 168 n n C7 C8 FAD doub 169 n y C7M HM71 FAD sing 170 n n C7M HM72 FAD sing 171 n n C7M HM73 FAD sing 172 n n C8 C8M FAD sing 173 n n C8 C9 FAD sing 174 n y C8M HM81 FAD sing 175 n n C8M HM82 FAD sing 176 n n C8M HM83 FAD sing 177 n n C9 C9A FAD doub 178 n y C9 H9 FAD sing 179 n n C9A N10 FAD sing 180 n n N10 C10 FAD sing 181 n n N10 C1' FAD sing 182 n n C1' C2' FAD sing 183 n n C1' "H1'1" FAD sing 184 n n C1' "H1'2" FAD sing 185 n n C2' O2' FAD sing 186 n n C2' C3' FAD sing 187 n n C2' H2' FAD sing 188 n n O2' HO2' FAD sing 189 n n C3' O3' FAD sing 190 n n C3' C4' FAD sing 191 n n C3' H3' FAD sing 192 n n O3' HO3' FAD sing 193 n n C4' O4' FAD sing 194 n n C4' C5' FAD sing 195 n n C4' H4' FAD sing 196 n n O4' HO4' FAD sing 197 n n C5' O5' FAD sing 198 n n C5' "H5'1" FAD sing 199 n n C5' "H5'2" FAD sing 200 n n O5' P FAD sing 201 n n P O1P FAD doub 202 n n P O2P FAD sing 203 n n P O3P FAD sing 204 n n O2P HOP2 FAD sing 205 n n # _atom_sites.entry_id 4IVM _atom_sites.fract_transf_matrix[1][1] 0.007348 _atom_sites.fract_transf_matrix[1][2] 0.004242 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACJ B 1 501 501 ACJ ACJ . C 3 FAD B 1 502 502 FAD FAD . D 4 GOL B 1 503 503 GOL GOL . E 4 GOL B 1 504 504 GOL GOL . F 5 HOH B 1 601 601 HOH HOH . F 5 HOH B 2 602 602 HOH HOH . F 5 HOH B 3 603 603 HOH HOH . F 5 HOH B 4 604 604 HOH HOH . F 5 HOH B 5 605 605 HOH HOH . F 5 HOH B 6 606 606 HOH HOH . F 5 HOH B 7 607 607 HOH HOH . F 5 HOH B 8 608 608 HOH HOH . F 5 HOH B 9 609 609 HOH HOH . F 5 HOH B 10 610 610 HOH HOH . F 5 HOH B 11 611 611 HOH HOH . F 5 HOH B 12 612 612 HOH HOH . F 5 HOH B 13 613 613 HOH HOH . F 5 HOH B 14 614 614 HOH HOH . F 5 HOH B 15 615 615 HOH HOH . F 5 HOH B 16 616 616 HOH HOH . F 5 HOH B 17 617 617 HOH HOH . F 5 HOH B 18 618 618 HOH HOH . F 5 HOH B 19 619 619 HOH HOH . F 5 HOH B 20 620 620 HOH HOH . F 5 HOH B 21 621 621 HOH HOH . F 5 HOH B 22 622 622 HOH HOH . F 5 HOH B 23 623 623 HOH HOH . F 5 HOH B 24 624 624 HOH HOH . F 5 HOH B 25 625 625 HOH HOH . F 5 HOH B 26 626 626 HOH HOH . F 5 HOH B 27 627 627 HOH HOH . F 5 HOH B 28 628 628 HOH HOH . F 5 HOH B 29 629 629 HOH HOH . F 5 HOH B 30 630 630 HOH HOH . F 5 HOH B 31 631 631 HOH HOH . F 5 HOH B 32 632 632 HOH HOH . F 5 HOH B 33 633 633 HOH HOH . F 5 HOH B 34 634 634 HOH HOH . F 5 HOH B 35 635 635 HOH HOH . F 5 HOH B 36 636 636 HOH HOH . F 5 HOH B 37 637 637 HOH HOH . F 5 HOH B 38 638 638 HOH HOH . F 5 HOH B 39 639 639 HOH HOH . F 5 HOH B 40 640 641 HOH HOH . F 5 HOH B 41 641 642 HOH HOH . F 5 HOH B 42 642 643 HOH HOH . F 5 HOH B 43 643 644 HOH HOH . F 5 HOH B 44 644 645 HOH HOH . F 5 HOH B 45 645 646 HOH HOH . F 5 HOH B 46 646 647 HOH HOH . F 5 HOH B 47 647 648 HOH HOH . F 5 HOH B 48 648 649 HOH HOH . F 5 HOH B 49 649 650 HOH HOH . F 5 HOH B 50 650 651 HOH HOH . F 5 HOH B 51 651 652 HOH HOH . F 5 HOH B 52 652 653 HOH HOH . F 5 HOH B 53 653 654 HOH HOH . F 5 HOH B 54 654 655 HOH HOH . F 5 HOH B 55 655 656 HOH HOH . F 5 HOH B 56 656 657 HOH HOH . F 5 HOH B 57 657 659 HOH HOH . F 5 HOH B 58 658 660 HOH HOH . F 5 HOH B 59 659 663 HOH HOH . F 5 HOH B 60 660 664 HOH HOH . F 5 HOH B 61 661 665 HOH HOH . F 5 HOH B 62 662 666 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 3 11.389 25.218 28.683 1 17.2 ? PA FAD 502 B 1 HETATM 2 O O1A FAD . . . C 3 12.637 24.459 29.029 1 17.81 ? O1A FAD 502 B 1 HETATM 3 O O2A FAD . . . C 3 11.573 26.667 29.08 1 21.64 ? O2A FAD 502 B 1 HETATM 4 O O5B FAD . . . C 3 11.167 25.086 27.095 1 18.21 ? O5B FAD 502 B 1 HETATM 5 C C5B FAD . . . C 3 10.24 25.887 26.401 1 19.1 ? C5B FAD 502 B 1 HETATM 6 C C4B FAD . . . C 3 10.857 26.186 25.041 1 22.02 ? C4B FAD 502 B 1 HETATM 7 O O4B FAD . . . C 3 9.921 26.806 24.177 1 20.47 ? O4B FAD 502 B 1 HETATM 8 C C3B FAD . . . C 3 12.057 27.118 25.159 1 24.88 ? C3B FAD 502 B 1 HETATM 9 O O3B FAD . . . C 3 13.222 26.469 24.696 1 28.49 ? O3B FAD 502 B 1 HETATM 10 C C2B FAD . . . C 3 11.711 28.298 24.274 1 22.85 ? C2B FAD 502 B 1 HETATM 11 O O2B FAD . . . C 3 12.828 28.689 23.518 1 21.44 ? O2B FAD 502 B 1 HETATM 12 C C1B FAD . . . C 3 10.615 27.743 23.383 1 20.87 ? C1B FAD 502 B 1 HETATM 13 N N9A FAD . . . C 3 9.739 28.775 22.789 1 22.75 ? N9A FAD 502 B 1 HETATM 14 C C8A FAD . . . C 3 9.23 29.911 23.389 1 24.66 ? C8A FAD 502 B 1 HETATM 15 N N7A FAD . . . C 3 8.482 30.583 22.476 1 25.07 ? N7A FAD 502 B 1 HETATM 16 C C5A FAD . . . C 3 8.509 29.901 21.305 1 25.04 ? C5A FAD 502 B 1 HETATM 17 C C6A FAD . . . C 3 7.927 30.132 20.058 1 24.16 ? C6A FAD 502 B 1 HETATM 18 N N6A FAD . . . C 3 7.084 31.142 19.888 1 28.32 ? N6A FAD 502 B 1 HETATM 19 N N1A FAD . . . C 3 8.139 29.229 19.029 1 26.37 ? N1A FAD 502 B 1 HETATM 20 C C2A FAD . . . C 3 8.922 28.106 19.222 1 26.09 ? C2A FAD 502 B 1 HETATM 21 N N3A FAD . . . C 3 9.495 27.885 20.462 1 24.99 ? N3A FAD 502 B 1 HETATM 22 C C4A FAD . . . C 3 9.295 28.761 21.487 1 22.73 ? C4A FAD 502 B 1 HETATM 23 N N1 FAD . . . C 3 13.88 20.475 37.548 1 20.14 ? N1 FAD 502 B 1 HETATM 24 C C2 FAD . . . C 3 14.172 19.292 38.19 1 23.41 ? C2 FAD 502 B 1 HETATM 25 O O2 FAD . . . C 3 13.424 18.324 38.092 1 25.58 ? O2 FAD 502 B 1 HETATM 26 N N3 FAD . . . C 3 15.31 19.172 38.956 1 26.03 ? N3 FAD 502 B 1 HETATM 27 C C4 FAD . . . C 3 16.181 20.226 39.104 1 27.82 ? C4 FAD 502 B 1 HETATM 28 O O4 FAD . . . C 3 17.362 19.964 39.334 1 34.91 ? O4 FAD 502 B 1 HETATM 29 C C4X FAD . . . C 3 15.892 21.425 38.468 1 23.7 ? C4X FAD 502 B 1 HETATM 30 N N5 FAD . . . C 3 16.762 22.487 38.623 1 24.31 ? N5 FAD 502 B 1 HETATM 31 C C5X FAD . . . C 3 16.527 23.682 37.991 1 19.93 ? C5X FAD 502 B 1 HETATM 32 C C6 FAD . . . C 3 17.429 24.745 38.145 1 17.59 ? C6 FAD 502 B 1 HETATM 33 C C7 FAD . . . C 3 17.202 25.961 37.499 1 19.86 ? C7 FAD 502 B 1 HETATM 34 C C7M FAD . . . C 3 18.374 26.884 37.335 1 19.93 ? C7M FAD 502 B 1 HETATM 35 C C8 FAD . . . C 3 16.07 26.104 36.691 1 22.05 ? C8 FAD 502 B 1 HETATM 36 C C8M FAD . . . C 3 16.085 27.062 35.53 1 19.33 ? C8M FAD 502 B 1 HETATM 37 C C9 FAD . . . C 3 15.178 25.042 36.561 1 20.29 ? C9 FAD 502 B 1 HETATM 38 C C9A FAD . . . C 3 15.392 23.822 37.196 1 20.02 ? C9A FAD 502 B 1 HETATM 39 N N10 FAD . . . C 3 14.498 22.768 37.047 1 16.79 ? N10 FAD 502 B 1 HETATM 40 C C10 FAD . . . C 3 14.749 21.556 37.681 1 21.5 ? C10 FAD 502 B 1 HETATM 41 C C1' FAD . . . C 3 13.136 23.024 36.454 1 15.52 ? C1' FAD 502 B 1 HETATM 42 C C2' FAD . . . C 3 13.048 22.377 35.077 1 16.22 ? C2' FAD 502 B 1 HETATM 43 O O2' FAD . . . C 3 14.346 22.341 34.507 1 15.61 ? O2' FAD 502 B 1 HETATM 44 C C3' FAD . . . C 3 12.102 23.129 34.139 1 16.51 ? C3' FAD 502 B 1 HETATM 45 O O3' FAD . . . C 3 10.819 23.3 34.713 1 15.69 ? O3' FAD 502 B 1 HETATM 46 C C4' FAD . . . C 3 11.916 22.401 32.807 1 17.59 ? C4' FAD 502 B 1 HETATM 47 O O4' FAD . . . C 3 13.158 22.101 32.206 1 16.9 ? O4' FAD 502 B 1 HETATM 48 C C5' FAD . . . C 3 11.115 23.284 31.868 1 17.65 ? C5' FAD 502 B 1 HETATM 49 O O5' FAD . . . C 3 10.895 22.555 30.697 1 18.19 ? O5' FAD 502 B 1 HETATM 50 P P FAD . . . C 3 9.76 23.011 29.682 1 19.87 ? P FAD 502 B 1 HETATM 51 O O1P FAD . . . C 3 9.798 22.161 28.437 1 20.32 ? O1P FAD 502 B 1 HETATM 52 O O2P FAD . . . C 3 8.406 22.861 30.318 1 20.57 ? O2P FAD 502 B 1 HETATM 53 O O3P FAD . . . C 3 10.058 24.573 29.355 1 18.79 ? O3P FAD 502 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #