data_4IVM
#
_model_server_result.job_id            8thFkm2DyUyAyWRGIwthqw 
_model_server_result.datetime_utc      '2024-11-12 22:19:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ivm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    4IVM 
#
_exptl.entry_id    4IVM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4IVM 
_cell.length_a            136.098 
_cell.length_b            136.098 
_cell.length_c            158.361 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4IVM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 78.576217 105.574 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 252 n n 
C1 C2 GOL sing 253 n n 
C1 H11 GOL sing 254 n n 
C1 H12 GOL sing 255 n n 
O1 HO1 GOL sing 256 n n 
C2 O2 GOL sing 257 n n 
C2 C3 GOL sing 258 n n 
C2 H2 GOL sing 259 n n 
O2 HO2 GOL sing 260 n n 
C3 O3 GOL sing 261 n n 
C3 H31 GOL sing 262 n n 
C3 H32 GOL sing 263 n n 
O3 HO3 GOL sing 264 n n 
#
_atom_sites.entry_id                     4IVM 
_atom_sites.fract_transf_matrix[1][1]    0.007348 
_atom_sites.fract_transf_matrix[1][2]    0.004242 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008484 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006315 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACJ B 1 501 501 ACJ ACJ . 
C 3 FAD B 1 502 502 FAD FAD . 
D 4 GOL B 1 503 503 GOL GOL . 
E 4 GOL B 1 504 504 GOL GOL . 
F 5 HOH B 1 601 601 HOH HOH . 
F 5 HOH B 2 602 602 HOH HOH . 
F 5 HOH B 3 603 603 HOH HOH . 
F 5 HOH B 4 604 604 HOH HOH . 
F 5 HOH B 5 605 605 HOH HOH . 
F 5 HOH B 6 606 606 HOH HOH . 
F 5 HOH B 7 607 607 HOH HOH . 
F 5 HOH B 8 608 608 HOH HOH . 
F 5 HOH B 9 609 609 HOH HOH . 
F 5 HOH B 10 610 610 HOH HOH . 
F 5 HOH B 11 611 611 HOH HOH . 
F 5 HOH B 12 612 612 HOH HOH . 
F 5 HOH B 13 613 613 HOH HOH . 
F 5 HOH B 14 614 614 HOH HOH . 
F 5 HOH B 15 615 615 HOH HOH . 
F 5 HOH B 16 616 616 HOH HOH . 
F 5 HOH B 17 617 617 HOH HOH . 
F 5 HOH B 18 618 618 HOH HOH . 
F 5 HOH B 19 619 619 HOH HOH . 
F 5 HOH B 20 620 620 HOH HOH . 
F 5 HOH B 21 621 621 HOH HOH . 
F 5 HOH B 22 622 622 HOH HOH . 
F 5 HOH B 23 623 623 HOH HOH . 
F 5 HOH B 24 624 624 HOH HOH . 
F 5 HOH B 25 625 625 HOH HOH . 
F 5 HOH B 26 626 626 HOH HOH . 
F 5 HOH B 27 627 627 HOH HOH . 
F 5 HOH B 28 628 628 HOH HOH . 
F 5 HOH B 29 629 629 HOH HOH . 
F 5 HOH B 30 630 630 HOH HOH . 
F 5 HOH B 31 631 631 HOH HOH . 
F 5 HOH B 32 632 632 HOH HOH . 
F 5 HOH B 33 633 633 HOH HOH . 
F 5 HOH B 34 634 634 HOH HOH . 
F 5 HOH B 35 635 635 HOH HOH . 
F 5 HOH B 36 636 636 HOH HOH . 
F 5 HOH B 37 637 637 HOH HOH . 
F 5 HOH B 38 638 638 HOH HOH . 
F 5 HOH B 39 639 639 HOH HOH . 
F 5 HOH B 40 640 641 HOH HOH . 
F 5 HOH B 41 641 642 HOH HOH . 
F 5 HOH B 42 642 643 HOH HOH . 
F 5 HOH B 43 643 644 HOH HOH . 
F 5 HOH B 44 644 645 HOH HOH . 
F 5 HOH B 45 645 646 HOH HOH . 
F 5 HOH B 46 646 647 HOH HOH . 
F 5 HOH B 47 647 648 HOH HOH . 
F 5 HOH B 48 648 649 HOH HOH . 
F 5 HOH B 49 649 650 HOH HOH . 
F 5 HOH B 50 650 651 HOH HOH . 
F 5 HOH B 51 651 652 HOH HOH . 
F 5 HOH B 52 652 653 HOH HOH . 
F 5 HOH B 53 653 654 HOH HOH . 
F 5 HOH B 54 654 655 HOH HOH . 
F 5 HOH B 55 655 656 HOH HOH . 
F 5 HOH B 56 656 657 HOH HOH . 
F 5 HOH B 57 657 659 HOH HOH . 
F 5 HOH B 58 658 660 HOH HOH . 
F 5 HOH B 59 659 663 HOH HOH . 
F 5 HOH B 60 660 664 HOH HOH . 
F 5 HOH B 61 661 665 HOH HOH . 
F 5 HOH B 62 662 666 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 -4.514 21.343 40.732 1 43.15 ? C1 GOL 504 B 1 
HETATM 2 O O1 GOL . . . E 4 -3.435 22.197 40.976 1 33.82 ? O1 GOL 504 B 1 
HETATM 3 C C2 GOL . . . E 4 -4.709 21.001 39.266 1 54.26 ? C2 GOL 504 B 1 
HETATM 4 O O2 GOL . . . E 4 -3.552 20.511 38.666 1 46.59 ? O2 GOL 504 B 1 
HETATM 5 C C3 GOL . . . E 4 -5.991 20.258 38.908 1 52.54 ? C3 GOL 504 B 1 
HETATM 6 O O3 GOL . . . E 4 -6.087 19.788 37.597 1 54.95 ? O3 GOL 504 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           6 
#