data_4IVN # _model_server_result.job_id uukGD59v2NNcJ3Mh6YYcgg _model_server_result.datetime_utc '2024-11-18 08:42:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ivn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 4IVN # _exptl.entry_id 4IVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.188 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IVN _cell.length_a 109.205 _cell.length_b 109.205 _cell.length_c 82.472 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C8 H16 N O9 P' _chem_comp.formula_weight 301.188 _chem_comp.id BMX _chem_comp.mon_nstd_flag n _chem_comp.name 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 2-(ACETYLAMINO)-2-DEOXY-6-O-PHOSPHONO-ALPHA-D-MANNOPYRANOSE;N-acetyl-6-O-phosphono-alpha-D-mannosamine;2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannose;2-acetamido-2-deoxy-6-O-phosphono-D-mannose;2-acetamido-2-deoxy-6-O-phosphono-mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BMX sing 70 n n C1 C2 BMX sing 71 n n C1 O5 BMX sing 72 n n C2 N2 BMX sing 73 n n C2 C3 BMX sing 74 n n N2 C7 BMX sing 75 n n C7 O7 BMX doub 76 n n C7 C8 BMX sing 77 n n C3 O3 BMX sing 78 n n C3 C4 BMX sing 79 n n C4 O4 BMX sing 80 n n C4 C5 BMX sing 81 n n C5 C6 BMX sing 82 n n C5 O5 BMX sing 83 n n C6 O6 BMX sing 84 n n O6 P BMX sing 85 n n P O17 BMX doub 86 n n P O18 BMX sing 87 n n P O19 BMX sing 88 n n C1 H1 BMX sing 89 n n O1 HO1 BMX sing 90 n n C2 H2 BMX sing 91 n n N2 HN2 BMX sing 92 n n C3 H3 BMX sing 93 n n C8 H81 BMX sing 94 n n C8 H82 BMX sing 95 n n C8 H83 BMX sing 96 n n O3 HO3 BMX sing 97 n n C4 H4 BMX sing 98 n n O4 HO4 BMX sing 99 n n C5 H5 BMX sing 100 n n C6 H61 BMX sing 101 n n C6 H62 BMX sing 102 n n O18 H18 BMX sing 103 n n O19 H19 BMX sing 104 n n # _pdbx_chem_comp_identifier.comp_id BMX _pdbx_chem_comp_identifier.identifier a-D-ManpNAc6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4IVN _atom_sites.fract_transf_matrix[1][1] 0.009157 _atom_sites.fract_transf_matrix[1][2] 0.005287 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BMX A 1 1000 1000 BMX BMX . D 2 BMX B 1 1000 1000 BMX BMX . E 3 HOH A 1 1101 1 HOH HOH . E 3 HOH A 2 1102 4 HOH HOH . E 3 HOH A 3 1103 6 HOH HOH . E 3 HOH A 4 1104 8 HOH HOH . E 3 HOH A 5 1105 10 HOH HOH . E 3 HOH A 6 1106 12 HOH HOH . E 3 HOH A 7 1107 14 HOH HOH . E 3 HOH A 8 1108 15 HOH HOH . E 3 HOH A 9 1109 18 HOH HOH . E 3 HOH A 10 1110 19 HOH HOH . E 3 HOH A 11 1111 20 HOH HOH . E 3 HOH A 12 1112 22 HOH HOH . E 3 HOH A 13 1113 23 HOH HOH . E 3 HOH A 14 1114 26 HOH HOH . E 3 HOH A 15 1115 27 HOH HOH . E 3 HOH A 16 1116 29 HOH HOH . E 3 HOH A 17 1117 30 HOH HOH . E 3 HOH A 18 1118 31 HOH HOH . E 3 HOH A 19 1119 35 HOH HOH . E 3 HOH A 20 1120 37 HOH HOH . E 3 HOH A 21 1121 38 HOH HOH . E 3 HOH A 22 1122 40 HOH HOH . E 3 HOH A 23 1123 41 HOH HOH . E 3 HOH A 24 1124 42 HOH HOH . E 3 HOH A 25 1125 43 HOH HOH . E 3 HOH A 26 1126 47 HOH HOH . E 3 HOH A 27 1127 48 HOH HOH . E 3 HOH A 28 1128 49 HOH HOH . E 3 HOH A 29 1129 50 HOH HOH . E 3 HOH A 30 1130 52 HOH HOH . E 3 HOH A 31 1131 54 HOH HOH . E 3 HOH A 32 1132 57 HOH HOH . E 3 HOH A 33 1133 60 HOH HOH . E 3 HOH A 34 1134 61 HOH HOH . E 3 HOH A 35 1135 62 HOH HOH . E 3 HOH A 36 1136 63 HOH HOH . E 3 HOH A 37 1137 65 HOH HOH . E 3 HOH A 38 1138 70 HOH HOH . E 3 HOH A 39 1139 71 HOH HOH . E 3 HOH A 40 1140 72 HOH HOH . E 3 HOH A 41 1141 73 HOH HOH . E 3 HOH A 42 1142 75 HOH HOH . E 3 HOH A 43 1143 76 HOH HOH . E 3 HOH A 44 1144 77 HOH HOH . E 3 HOH A 45 1145 80 HOH HOH . E 3 HOH A 46 1146 81 HOH HOH . E 3 HOH A 47 1147 82 HOH HOH . E 3 HOH A 48 1148 83 HOH HOH . E 3 HOH A 49 1149 85 HOH HOH . E 3 HOH A 50 1150 86 HOH HOH . E 3 HOH A 51 1151 96 HOH HOH . E 3 HOH A 52 1152 99 HOH HOH . E 3 HOH A 53 1153 101 HOH HOH . E 3 HOH A 54 1154 102 HOH HOH . E 3 HOH A 55 1155 103 HOH HOH . E 3 HOH A 56 1156 105 HOH HOH . E 3 HOH A 57 1157 107 HOH HOH . E 3 HOH A 58 1158 110 HOH HOH . E 3 HOH A 59 1159 114 HOH HOH . E 3 HOH A 60 1160 115 HOH HOH . E 3 HOH A 61 1161 116 HOH HOH . E 3 HOH A 62 1162 117 HOH HOH . E 3 HOH A 63 1163 123 HOH HOH . E 3 HOH A 64 1164 124 HOH HOH . E 3 HOH A 65 1165 131 HOH HOH . E 3 HOH A 66 1166 135 HOH HOH . E 3 HOH A 67 1167 138 HOH HOH . E 3 HOH A 68 1168 139 HOH HOH . E 3 HOH A 69 1169 141 HOH HOH . E 3 HOH A 70 1170 142 HOH HOH . E 3 HOH A 71 1171 145 HOH HOH . E 3 HOH A 72 1172 146 HOH HOH . E 3 HOH A 73 1173 147 HOH HOH . E 3 HOH A 74 1174 149 HOH HOH . E 3 HOH A 75 1175 151 HOH HOH . E 3 HOH A 76 1176 152 HOH HOH . E 3 HOH A 77 1177 153 HOH HOH . E 3 HOH A 78 1178 154 HOH HOH . E 3 HOH A 79 1179 155 HOH HOH . E 3 HOH A 80 1180 157 HOH HOH . E 3 HOH A 81 1181 162 HOH HOH . E 3 HOH A 82 1182 163 HOH HOH . E 3 HOH A 83 1183 164 HOH HOH . E 3 HOH A 84 1184 166 HOH HOH . E 3 HOH A 85 1185 167 HOH HOH . E 3 HOH A 86 1186 169 HOH HOH . E 3 HOH A 87 1187 171 HOH HOH . E 3 HOH A 88 1188 172 HOH HOH . E 3 HOH A 89 1189 174 HOH HOH . E 3 HOH A 90 1190 175 HOH HOH . E 3 HOH A 91 1191 176 HOH HOH . E 3 HOH A 92 1192 180 HOH HOH . E 3 HOH A 93 1193 182 HOH HOH . E 3 HOH A 94 1194 183 HOH HOH . E 3 HOH A 95 1195 184 HOH HOH . E 3 HOH A 96 1196 185 HOH HOH . E 3 HOH A 97 1197 186 HOH HOH . E 3 HOH A 98 1198 188 HOH HOH . E 3 HOH A 99 1199 189 HOH HOH . E 3 HOH A 100 1200 192 HOH HOH . E 3 HOH A 101 1201 195 HOH HOH . E 3 HOH A 102 1202 197 HOH HOH . E 3 HOH A 103 1203 200 HOH HOH . E 3 HOH A 104 1204 201 HOH HOH . E 3 HOH A 105 1205 204 HOH HOH . E 3 HOH A 106 1206 209 HOH HOH . E 3 HOH A 107 1207 212 HOH HOH . E 3 HOH A 108 1208 213 HOH HOH . E 3 HOH A 109 1209 214 HOH HOH . E 3 HOH A 110 1210 215 HOH HOH . E 3 HOH A 111 1211 216 HOH HOH . E 3 HOH A 112 1212 220 HOH HOH . E 3 HOH A 113 1213 221 HOH HOH . F 3 HOH B 1 1101 2 HOH HOH . F 3 HOH B 2 1102 3 HOH HOH . F 3 HOH B 3 1103 5 HOH HOH . F 3 HOH B 4 1104 7 HOH HOH . F 3 HOH B 5 1105 9 HOH HOH . F 3 HOH B 6 1106 11 HOH HOH . F 3 HOH B 7 1107 13 HOH HOH . F 3 HOH B 8 1108 16 HOH HOH . F 3 HOH B 9 1109 17 HOH HOH . F 3 HOH B 10 1110 21 HOH HOH . F 3 HOH B 11 1111 24 HOH HOH . F 3 HOH B 12 1112 25 HOH HOH . F 3 HOH B 13 1113 28 HOH HOH . F 3 HOH B 14 1114 32 HOH HOH . F 3 HOH B 15 1115 33 HOH HOH . F 3 HOH B 16 1116 34 HOH HOH . F 3 HOH B 17 1117 36 HOH HOH . F 3 HOH B 18 1118 39 HOH HOH . F 3 HOH B 19 1119 44 HOH HOH . F 3 HOH B 20 1120 45 HOH HOH . F 3 HOH B 21 1121 46 HOH HOH . F 3 HOH B 22 1122 51 HOH HOH . F 3 HOH B 23 1123 53 HOH HOH . F 3 HOH B 24 1124 55 HOH HOH . F 3 HOH B 25 1125 56 HOH HOH . F 3 HOH B 26 1126 58 HOH HOH . F 3 HOH B 27 1127 59 HOH HOH . F 3 HOH B 28 1128 64 HOH HOH . F 3 HOH B 29 1129 66 HOH HOH . F 3 HOH B 30 1130 67 HOH HOH . F 3 HOH B 31 1131 68 HOH HOH . F 3 HOH B 32 1132 69 HOH HOH . F 3 HOH B 33 1133 74 HOH HOH . F 3 HOH B 34 1134 78 HOH HOH . F 3 HOH B 35 1135 79 HOH HOH . F 3 HOH B 36 1136 84 HOH HOH . F 3 HOH B 37 1137 87 HOH HOH . F 3 HOH B 38 1138 88 HOH HOH . F 3 HOH B 39 1139 89 HOH HOH . F 3 HOH B 40 1140 90 HOH HOH . F 3 HOH B 41 1141 91 HOH HOH . F 3 HOH B 42 1142 92 HOH HOH . F 3 HOH B 43 1143 93 HOH HOH . F 3 HOH B 44 1144 94 HOH HOH . F 3 HOH B 45 1145 95 HOH HOH . F 3 HOH B 46 1146 97 HOH HOH . F 3 HOH B 47 1147 98 HOH HOH . F 3 HOH B 48 1148 100 HOH HOH . F 3 HOH B 49 1149 104 HOH HOH . F 3 HOH B 50 1150 106 HOH HOH . F 3 HOH B 51 1151 108 HOH HOH . F 3 HOH B 52 1152 109 HOH HOH . F 3 HOH B 53 1153 111 HOH HOH . F 3 HOH B 54 1154 112 HOH HOH . F 3 HOH B 55 1155 113 HOH HOH . F 3 HOH B 56 1156 118 HOH HOH . F 3 HOH B 57 1157 119 HOH HOH . F 3 HOH B 58 1158 120 HOH HOH . F 3 HOH B 59 1159 121 HOH HOH . F 3 HOH B 60 1160 122 HOH HOH . F 3 HOH B 61 1161 125 HOH HOH . F 3 HOH B 62 1162 126 HOH HOH . F 3 HOH B 63 1163 127 HOH HOH . F 3 HOH B 64 1164 128 HOH HOH . F 3 HOH B 65 1165 129 HOH HOH . F 3 HOH B 66 1166 130 HOH HOH . F 3 HOH B 67 1167 132 HOH HOH . F 3 HOH B 68 1168 133 HOH HOH . F 3 HOH B 69 1169 134 HOH HOH . F 3 HOH B 70 1170 136 HOH HOH . F 3 HOH B 71 1171 137 HOH HOH . F 3 HOH B 72 1172 140 HOH HOH . F 3 HOH B 73 1173 143 HOH HOH . F 3 HOH B 74 1174 144 HOH HOH . F 3 HOH B 75 1175 148 HOH HOH . F 3 HOH B 76 1176 150 HOH HOH . F 3 HOH B 77 1177 156 HOH HOH . F 3 HOH B 78 1178 158 HOH HOH . F 3 HOH B 79 1179 159 HOH HOH . F 3 HOH B 80 1180 160 HOH HOH . F 3 HOH B 81 1181 161 HOH HOH . F 3 HOH B 82 1182 165 HOH HOH . F 3 HOH B 83 1183 168 HOH HOH . F 3 HOH B 84 1184 170 HOH HOH . F 3 HOH B 85 1185 173 HOH HOH . F 3 HOH B 86 1186 177 HOH HOH . F 3 HOH B 87 1187 178 HOH HOH . F 3 HOH B 88 1188 179 HOH HOH . F 3 HOH B 89 1189 181 HOH HOH . F 3 HOH B 90 1190 187 HOH HOH . F 3 HOH B 91 1191 190 HOH HOH . F 3 HOH B 92 1192 191 HOH HOH . F 3 HOH B 93 1193 193 HOH HOH . F 3 HOH B 94 1194 194 HOH HOH . F 3 HOH B 95 1195 196 HOH HOH . F 3 HOH B 96 1196 198 HOH HOH . F 3 HOH B 97 1197 199 HOH HOH . F 3 HOH B 98 1198 202 HOH HOH . F 3 HOH B 99 1199 203 HOH HOH . F 3 HOH B 100 1200 205 HOH HOH . F 3 HOH B 101 1201 206 HOH HOH . F 3 HOH B 102 1202 207 HOH HOH . F 3 HOH B 103 1203 208 HOH HOH . F 3 HOH B 104 1204 210 HOH HOH . F 3 HOH B 105 1205 211 HOH HOH . F 3 HOH B 106 1206 217 HOH HOH . F 3 HOH B 107 1207 218 HOH HOH . F 3 HOH B 108 1208 219 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BMX . . . C 2 35.961 -4.95 18.275 0.4 12 ? C1 BMX 1000 A 1 HETATM 2 C C2 BMX . . . C 2 36.39 -5.91 17.21 0.4 12.88 ? C2 BMX 1000 A 1 HETATM 3 C C3 BMX . . . C 2 37.834 -5.606 16.856 0.4 12.35 ? C3 BMX 1000 A 1 HETATM 4 C C4 BMX . . . C 2 37.896 -4.121 16.436 0.4 12.97 ? C4 BMX 1000 A 1 HETATM 5 C C5 BMX . . . C 2 37.43 -3.163 17.578 0.4 12.35 ? C5 BMX 1000 A 1 HETATM 6 C C6 BMX . . . C 2 37.362 -1.655 17.242 0.4 11.98 ? C6 BMX 1000 A 1 HETATM 7 C C7 BMX . . . C 2 35.212 -6.607 15.28 0.4 13.04 ? C7 BMX 1000 A 1 HETATM 8 C C8 BMX . . . C 2 34.19 -6.327 14.16 0.4 15.65 ? C8 BMX 1000 A 1 HETATM 9 N N2 BMX . . . C 2 35.427 -5.693 16.078 0.4 12.69 ? N2 BMX 1000 A 1 HETATM 10 O O1 BMX . . . C 2 36.677 -5.278 19.503 0.4 12.1 ? O1 BMX 1000 A 1 HETATM 11 O O3 BMX . . . C 2 38.276 -6.497 15.843 0.4 12.6 ? O3 BMX 1000 A 1 HETATM 12 O O4 BMX . . . C 2 39.211 -3.784 16.039 0.4 12.01 ? O4 BMX 1000 A 1 HETATM 13 O O5 BMX . . . C 2 36.124 -3.574 17.984 0.4 13.59 ? O5 BMX 1000 A 1 HETATM 14 O O6 BMX . . . C 2 36.576 -1.484 16.032 0.4 13.62 ? O6 BMX 1000 A 1 HETATM 15 O O7 BMX . . . C 2 35.782 -7.664 15.426 0.4 14.76 ? O7 BMX 1000 A 1 HETATM 16 P P BMX . . . C 2 36.529 -0.081 15.428 0.4 12.76 ? P BMX 1000 A 1 HETATM 17 O O19 BMX . . . C 2 35.473 -0.222 14.347 0.4 12.63 ? O19 BMX 1000 A 1 HETATM 18 O O17 BMX . . . C 2 36.326 0.818 16.5 0.4 13.83 ? O17 BMX 1000 A 1 HETATM 19 O O18 BMX . . . C 2 37.866 0.035 14.833 0.4 13.15 ? O18 BMX 1000 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #