data_4IVO # _model_server_result.job_id bfXbhxHRR9yV51_-hrxggA _model_server_result.datetime_utc '2024-11-12 22:20:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ivo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 4IVO # _exptl.entry_id 4IVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IVO _cell.length_a 135.809 _cell.length_b 135.809 _cell.length_c 158.338 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_444 x-y-1/3,-y-2/3,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 -78.409363 -105.558667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 252 n n C1 C2 GOL sing 253 n n C1 H11 GOL sing 254 n n C1 H12 GOL sing 255 n n O1 HO1 GOL sing 256 n n C2 O2 GOL sing 257 n n C2 C3 GOL sing 258 n n C2 H2 GOL sing 259 n n O2 HO2 GOL sing 260 n n C3 O3 GOL sing 261 n n C3 H31 GOL sing 262 n n C3 H32 GOL sing 263 n n O3 HO3 GOL sing 264 n n # _atom_sites.entry_id 4IVO _atom_sites.fract_transf_matrix[1][1] 0.007363 _atom_sites.fract_transf_matrix[1][2] 0.004251 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006316 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACJ B 1 501 501 ACJ ACJ . C 3 FAD B 1 502 502 FAD FAD . D 4 GOL B 1 503 503 GOL GOL . E 4 GOL B 1 504 504 GOL GOL . F 5 HOH B 1 601 601 HOH HOH . F 5 HOH B 2 602 602 HOH HOH . F 5 HOH B 3 603 603 HOH HOH . F 5 HOH B 4 604 604 HOH HOH . F 5 HOH B 5 605 605 HOH HOH . F 5 HOH B 6 606 606 HOH HOH . F 5 HOH B 7 607 607 HOH HOH . F 5 HOH B 8 608 608 HOH HOH . F 5 HOH B 9 609 609 HOH HOH . F 5 HOH B 10 610 610 HOH HOH . F 5 HOH B 11 611 611 HOH HOH . F 5 HOH B 12 612 612 HOH HOH . F 5 HOH B 13 613 613 HOH HOH . F 5 HOH B 14 614 614 HOH HOH . F 5 HOH B 15 615 615 HOH HOH . F 5 HOH B 16 616 616 HOH HOH . F 5 HOH B 17 617 617 HOH HOH . F 5 HOH B 18 618 618 HOH HOH . F 5 HOH B 19 619 619 HOH HOH . F 5 HOH B 20 620 620 HOH HOH . F 5 HOH B 21 621 621 HOH HOH . F 5 HOH B 22 622 622 HOH HOH . F 5 HOH B 23 623 623 HOH HOH . F 5 HOH B 24 624 624 HOH HOH . F 5 HOH B 25 625 625 HOH HOH . F 5 HOH B 26 626 626 HOH HOH . F 5 HOH B 27 627 627 HOH HOH . F 5 HOH B 28 628 628 HOH HOH . F 5 HOH B 29 629 629 HOH HOH . F 5 HOH B 30 630 630 HOH HOH . F 5 HOH B 31 631 631 HOH HOH . F 5 HOH B 32 632 632 HOH HOH . F 5 HOH B 33 633 633 HOH HOH . F 5 HOH B 34 634 634 HOH HOH . F 5 HOH B 35 635 635 HOH HOH . F 5 HOH B 36 636 636 HOH HOH . F 5 HOH B 37 637 637 HOH HOH . F 5 HOH B 38 638 638 HOH HOH . F 5 HOH B 39 639 639 HOH HOH . F 5 HOH B 40 640 640 HOH HOH . F 5 HOH B 41 641 641 HOH HOH . F 5 HOH B 42 642 642 HOH HOH . F 5 HOH B 43 643 643 HOH HOH . F 5 HOH B 44 644 644 HOH HOH . F 5 HOH B 45 645 645 HOH HOH . F 5 HOH B 46 646 646 HOH HOH . F 5 HOH B 47 647 647 HOH HOH . F 5 HOH B 48 648 648 HOH HOH . F 5 HOH B 49 649 649 HOH HOH . F 5 HOH B 50 650 650 HOH HOH . F 5 HOH B 51 651 651 HOH HOH . F 5 HOH B 52 652 652 HOH HOH . F 5 HOH B 53 653 653 HOH HOH . F 5 HOH B 54 654 654 HOH HOH . F 5 HOH B 55 655 655 HOH HOH . F 5 HOH B 56 656 656 HOH HOH . F 5 HOH B 57 657 657 HOH HOH . F 5 HOH B 58 658 658 HOH HOH . F 5 HOH B 59 659 659 HOH HOH . F 5 HOH B 60 660 660 HOH HOH . F 5 HOH B 61 661 661 HOH HOH . F 5 HOH B 62 662 662 HOH HOH . F 5 HOH B 63 663 663 HOH HOH . F 5 HOH B 64 664 664 HOH HOH . F 5 HOH B 65 665 665 HOH HOH . F 5 HOH B 66 666 666 HOH HOH . F 5 HOH B 67 667 667 HOH HOH . F 5 HOH B 68 668 668 HOH HOH . F 5 HOH B 69 669 669 HOH HOH . F 5 HOH B 70 670 670 HOH HOH . F 5 HOH B 71 671 671 HOH HOH . F 5 HOH B 72 672 672 HOH HOH . F 5 HOH B 73 673 673 HOH HOH . F 5 HOH B 74 674 674 HOH HOH . F 5 HOH B 75 675 675 HOH HOH . F 5 HOH B 76 676 676 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -6.627 -20.23 -40.733 1 36.21 ? C1 GOL 504 B 1 HETATM 2 O O1 GOL . . . E 4 -5.579 -20.336 -41.659 1 33.73 ? O1 GOL 504 B 1 HETATM 3 C C2 GOL . . . E 4 -6.443 -20.858 -39.351 1 49.05 ? C2 GOL 504 B 1 HETATM 4 O O2 GOL . . . E 4 -5.297 -20.459 -38.643 1 38.51 ? O2 GOL 504 B 1 HETATM 5 C C3 GOL . . . E 4 -7.743 -21.053 -38.555 1 41.39 ? C3 GOL 504 B 1 HETATM 6 O O3 GOL . . . E 4 -7.719 -21.55 -37.244 1 34.51 ? O3 GOL 504 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #