data_4IVR
#
_model_server_result.job_id            wTVc262ndflXhMEETeEiZQ 
_model_server_result.datetime_utc      '2024-11-29 14:28:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ivr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    4IVR 
#
_exptl.entry_id    4IVR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              240.256 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[(2,6-dimethoxy-5-methylpyrimidin-4-yl)methylidene]propane-1,3-diol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4IVR 
_cell.length_a            113.042 
_cell.length_b            115.127 
_cell.length_c            108.075 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4IVR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C11 H16 N2 O4' 
_chem_comp.formula_weight    240.256 
_chem_comp.id                N50 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[(2,6-dimethoxy-5-methylpyrimidin-4-yl)methylidene]propane-1,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 O1 N50 sing 237 n n 
O1 C1 N50 sing 238 n n 
C14 C12 N50 sing 239 n n 
C14 O4 N50 sing 240 n n 
C1 N2 N50 doub 241 n y 
C1 N1 N50 sing 242 n y 
N2 C2 N50 sing 243 n y 
C02 O2 N50 sing 244 n n 
N1 C5 N50 doub 245 n y 
C12 C13 N50 sing 246 n n 
C12 C11 N50 doub 247 n n 
C2 O2 N50 sing 248 n n 
C2 C3 N50 doub 249 n y 
C13 O3 N50 sing 250 n n 
C5 C3 N50 sing 251 n y 
C5 C11 N50 sing 252 n n 
C3 C4 N50 sing 253 n n 
C01 H1 N50 sing 254 n n 
C01 H2 N50 sing 255 n n 
C01 H3 N50 sing 256 n n 
C02 H4 N50 sing 257 n n 
C02 H5 N50 sing 258 n n 
C02 H6 N50 sing 259 n n 
C4 H7 N50 sing 260 n n 
C4 H8 N50 sing 261 n n 
C4 H9 N50 sing 262 n n 
C11 H10 N50 sing 263 n n 
C13 H13 N50 sing 264 n n 
C13 H14 N50 sing 265 n n 
C14 H15 N50 sing 266 n n 
C14 H16 N50 sing 267 n n 
O3 H17 N50 sing 268 n n 
O4 H18 N50 sing 269 n n 
#
_atom_sites.entry_id                     4IVR 
_atom_sites.fract_transf_matrix[1][1]    0.008846 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008686 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009253 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 N50 A 1 501 501 N50 N50 . 
D 3 SO4 A 1 502 401 SO4 SO4 . 
E 2 N50 B 1 401 502 N50 N50 . 
F 3 SO4 B 1 402 402 SO4 SO4 . 
G 4 HOH A 1 601 6 HOH HOH . 
G 4 HOH A 2 602 8 HOH HOH . 
G 4 HOH A 3 603 9 HOH HOH . 
G 4 HOH A 4 604 13 HOH HOH . 
G 4 HOH A 5 605 16 HOH HOH . 
G 4 HOH A 6 606 19 HOH HOH . 
G 4 HOH A 7 607 22 HOH HOH . 
G 4 HOH A 8 608 27 HOH HOH . 
G 4 HOH A 9 609 28 HOH HOH . 
G 4 HOH A 10 610 32 HOH HOH . 
G 4 HOH A 11 611 33 HOH HOH . 
G 4 HOH A 12 612 35 HOH HOH . 
G 4 HOH A 13 613 37 HOH HOH . 
G 4 HOH A 14 614 41 HOH HOH . 
G 4 HOH A 15 615 45 HOH HOH . 
G 4 HOH A 16 616 47 HOH HOH . 
G 4 HOH A 17 617 48 HOH HOH . 
G 4 HOH A 18 618 49 HOH HOH . 
G 4 HOH A 19 619 50 HOH HOH . 
G 4 HOH A 20 620 53 HOH HOH . 
G 4 HOH A 21 621 54 HOH HOH . 
G 4 HOH A 22 622 58 HOH HOH . 
G 4 HOH A 23 623 60 HOH HOH . 
G 4 HOH A 24 624 61 HOH HOH . 
G 4 HOH A 25 625 62 HOH HOH . 
G 4 HOH A 26 626 63 HOH HOH . 
G 4 HOH A 27 627 64 HOH HOH . 
G 4 HOH A 28 628 65 HOH HOH . 
G 4 HOH A 29 629 66 HOH HOH . 
G 4 HOH A 30 630 67 HOH HOH . 
G 4 HOH A 31 631 70 HOH HOH . 
G 4 HOH A 32 632 71 HOH HOH . 
G 4 HOH A 33 633 73 HOH HOH . 
G 4 HOH A 34 634 75 HOH HOH . 
G 4 HOH A 35 635 76 HOH HOH . 
G 4 HOH A 36 636 79 HOH HOH . 
G 4 HOH A 37 637 80 HOH HOH . 
G 4 HOH A 38 638 115 HOH HOH . 
G 4 HOH A 39 639 116 HOH HOH . 
G 4 HOH A 40 640 117 HOH HOH . 
G 4 HOH A 41 641 118 HOH HOH . 
G 4 HOH A 42 642 120 HOH HOH . 
G 4 HOH A 43 643 121 HOH HOH . 
G 4 HOH A 44 644 124 HOH HOH . 
H 4 HOH B 1 501 1 HOH HOH . 
H 4 HOH B 2 502 2 HOH HOH . 
H 4 HOH B 3 503 3 HOH HOH . 
H 4 HOH B 4 504 4 HOH HOH . 
H 4 HOH B 5 505 5 HOH HOH . 
H 4 HOH B 6 506 7 HOH HOH . 
H 4 HOH B 7 507 10 HOH HOH . 
H 4 HOH B 8 508 11 HOH HOH . 
H 4 HOH B 9 509 12 HOH HOH . 
H 4 HOH B 10 510 14 HOH HOH . 
H 4 HOH B 11 511 15 HOH HOH . 
H 4 HOH B 12 512 17 HOH HOH . 
H 4 HOH B 13 513 18 HOH HOH . 
H 4 HOH B 14 514 20 HOH HOH . 
H 4 HOH B 15 515 21 HOH HOH . 
H 4 HOH B 16 516 23 HOH HOH . 
H 4 HOH B 17 517 24 HOH HOH . 
H 4 HOH B 18 518 25 HOH HOH . 
H 4 HOH B 19 519 26 HOH HOH . 
H 4 HOH B 20 520 29 HOH HOH . 
H 4 HOH B 21 521 30 HOH HOH . 
H 4 HOH B 22 522 31 HOH HOH . 
H 4 HOH B 23 523 34 HOH HOH . 
H 4 HOH B 24 524 36 HOH HOH . 
H 4 HOH B 25 525 39 HOH HOH . 
H 4 HOH B 26 526 40 HOH HOH . 
H 4 HOH B 27 527 42 HOH HOH . 
H 4 HOH B 28 528 43 HOH HOH . 
H 4 HOH B 29 529 44 HOH HOH . 
H 4 HOH B 30 530 46 HOH HOH . 
H 4 HOH B 31 531 51 HOH HOH . 
H 4 HOH B 32 532 52 HOH HOH . 
H 4 HOH B 33 533 55 HOH HOH . 
H 4 HOH B 34 534 56 HOH HOH . 
H 4 HOH B 35 535 59 HOH HOH . 
H 4 HOH B 36 536 68 HOH HOH . 
H 4 HOH B 37 537 69 HOH HOH . 
H 4 HOH B 38 538 81 HOH HOH . 
H 4 HOH B 39 539 82 HOH HOH . 
H 4 HOH B 40 540 83 HOH HOH . 
H 4 HOH B 41 541 84 HOH HOH . 
H 4 HOH B 42 542 85 HOH HOH . 
H 4 HOH B 43 543 86 HOH HOH . 
H 4 HOH B 44 544 87 HOH HOH . 
H 4 HOH B 45 545 88 HOH HOH . 
H 4 HOH B 46 546 89 HOH HOH . 
H 4 HOH B 47 547 90 HOH HOH . 
H 4 HOH B 48 548 91 HOH HOH . 
H 4 HOH B 49 549 93 HOH HOH . 
H 4 HOH B 50 550 94 HOH HOH . 
H 4 HOH B 51 551 95 HOH HOH . 
H 4 HOH B 52 552 96 HOH HOH . 
H 4 HOH B 53 553 97 HOH HOH . 
H 4 HOH B 54 554 98 HOH HOH . 
H 4 HOH B 55 555 99 HOH HOH . 
H 4 HOH B 56 556 100 HOH HOH . 
H 4 HOH B 57 557 101 HOH HOH . 
H 4 HOH B 58 558 102 HOH HOH . 
H 4 HOH B 59 559 103 HOH HOH . 
H 4 HOH B 60 560 104 HOH HOH . 
H 4 HOH B 61 561 106 HOH HOH . 
H 4 HOH B 62 562 108 HOH HOH . 
H 4 HOH B 63 563 109 HOH HOH . 
H 4 HOH B 64 564 110 HOH HOH . 
H 4 HOH B 65 565 112 HOH HOH . 
H 4 HOH B 66 566 114 HOH HOH . 
H 4 HOH B 67 567 119 HOH HOH . 
H 4 HOH B 68 568 122 HOH HOH . 
H 4 HOH B 69 569 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 N50 . . . E 2 46.768 32.038 54.298 1 31.07 ? N1 N50 401 B 1 
HETATM 2 O O1 N50 . . . E 2 45.872 30.215 53.161 1 38.97 ? O1 N50 401 B 1 
HETATM 3 C C01 N50 . . . E 2 47.237 30.151 52.723 1 27.76 ? C01 N50 401 B 1 
HETATM 4 O O2 N50 . . . E 2 43.058 32.763 55.934 1 30.67 ? O2 N50 401 B 1 
HETATM 5 C C02 N50 . . . E 2 41.928 31.886 55.74 1 26.45 ? C02 N50 401 B 1 
HETATM 6 N N2 N50 . . . E 2 44.393 31.406 54.53 1 32.91 ? N2 N50 401 B 1 
HETATM 7 C C1 N50 . . . E 2 45.671 31.268 54.034 1 31.86 ? C1 N50 401 B 1 
HETATM 8 C C2 N50 . . . E 2 44.263 32.476 55.389 1 23.2 ? C2 N50 401 B 1 
HETATM 9 C C3 N50 . . . E 2 45.32 33.345 55.724 1 30.64 ? C3 N50 401 B 1 
HETATM 10 C C4 N50 . . . E 2 45.133 34.488 56.664 1 26.04 ? C4 N50 401 B 1 
HETATM 11 C C5 N50 . . . E 2 46.579 33.067 55.14 1 22.16 ? C5 N50 401 B 1 
HETATM 12 C C11 N50 . . . E 2 47.717 33.943 55.401 1 29.93 ? C11 N50 401 B 1 
HETATM 13 C C12 N50 . . . E 2 49.043 33.727 55.327 1 36.43 ? C12 N50 401 B 1 
HETATM 14 C C13 N50 . . . E 2 49.949 34.567 56.172 1 38.15 ? C13 N50 401 B 1 
HETATM 15 C C14 N50 . . . E 2 49.697 33.039 54.176 1 38.99 ? C14 N50 401 B 1 
HETATM 16 O O3 N50 . . . E 2 50.313 35.659 55.366 1 49.95 ? O3 N50 401 B 1 
HETATM 17 O O4 N50 . . . E 2 49.513 31.658 54.357 1 38.5 ? O4 N50 401 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           441 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           17 
#