data_4IVS # _model_server_result.job_id dsBL48vD6Gw6abx8DyMC8Q _model_server_result.datetime_utc '2024-10-12 14:28:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ivs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4IVS # _exptl.entry_id 4IVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.313 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{N-[4-(acetylamino)-3,5-dichlorobenzyl]carbamimidoyl}-2-(6-cyano-1H-indol-1-yl)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IVS _cell.length_a 104.883 _cell.length_b 129.376 _cell.length_c 77.249 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 195 A CYS 155 1_555 A SG CYS 399 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 257 A CYS 217 1_555 A SG CYS 422 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 A SG CYS 309 A CYS 269 1_555 A SG CYS 359 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'C21 H18 Cl2 N6 O2' _chem_comp.formula_weight 457.313 _chem_comp.id VSI _chem_comp.mon_nstd_flag . _chem_comp.name N-{N-[4-(acetylamino)-3,5-dichlorobenzyl]carbamimidoyl}-2-(6-cyano-1H-indol-1-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAP CAN VSI doub 376 n n NAO CAN VSI sing 377 n n NAO CAQ VSI sing 378 n n CAN NAL VSI sing 379 n n CAQ CAR VSI sing 380 n n CAW CAR VSI doub 381 n y CAW CAV VSI sing 382 n y O C VSI doub 383 n n CLX CAV VSI sing 384 n n NAL C VSI sing 385 n n CAR CAS VSI sing 386 n y CAV CAU VSI doub 387 n y C CA VSI sing 388 n n CAS CAT VSI doub 389 n y CAU CAT VSI sing 390 n y CAU NAZ VSI sing 391 n n CA N VSI sing 392 n n CAH N VSI sing 393 n y CAH CAI VSI doub 394 n y N CAD VSI sing 395 n y CAT CLY VSI sing 396 n n OBC CBA VSI doub 397 n n NAZ CBA VSI sing 398 n n CBA CBB VSI sing 399 n n CAI CAE VSI sing 400 n y CAD CAC VSI doub 401 n y CAD CAE VSI sing 402 n y CAC CAB VSI sing 403 n y CAE CAF VSI doub 404 n y CAB CAA VSI doub 405 n y CAB CBD VSI sing 406 n n CAF CAA VSI sing 407 n y CBD NBE VSI trip 408 n n CBB H1 VSI sing 409 n n CBB H2 VSI sing 410 n n CBB H3 VSI sing 411 n n NAZ H4 VSI sing 412 n n CAW H5 VSI sing 413 n n CAS H6 VSI sing 414 n n CAQ H7 VSI sing 415 n n CAQ H8 VSI sing 416 n n NAO H9 VSI sing 417 n n NAP H10 VSI sing 418 n n NAL H11 VSI sing 419 n n CA H12 VSI sing 420 n n CA H13 VSI sing 421 n n CAC H14 VSI sing 422 n n CAA H15 VSI sing 423 n n CAF H16 VSI sing 424 n n CAI H17 VSI sing 425 n n CAH H18 VSI sing 426 n n # _atom_sites.entry_id 4IVS _atom_sites.fract_transf_matrix[1][1] 0.009534 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VSI A 1 401 1 VSI DRG . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 3 HOH HOH . C 3 HOH A 4 504 4 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 6 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 9 HOH HOH . C 3 HOH A 10 510 10 HOH HOH . C 3 HOH A 11 511 11 HOH HOH . C 3 HOH A 12 512 12 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 14 HOH HOH . C 3 HOH A 15 515 15 HOH HOH . C 3 HOH A 16 516 16 HOH HOH . C 3 HOH A 17 517 17 HOH HOH . C 3 HOH A 18 518 18 HOH HOH . C 3 HOH A 19 519 19 HOH HOH . C 3 HOH A 20 520 20 HOH HOH . C 3 HOH A 21 521 21 HOH HOH . C 3 HOH A 22 522 22 HOH HOH . C 3 HOH A 23 523 23 HOH HOH . C 3 HOH A 24 524 24 HOH HOH . C 3 HOH A 25 525 25 HOH HOH . C 3 HOH A 26 526 26 HOH HOH . C 3 HOH A 27 527 27 HOH HOH . C 3 HOH A 28 528 28 HOH HOH . C 3 HOH A 29 529 29 HOH HOH . C 3 HOH A 30 530 30 HOH HOH . C 3 HOH A 31 531 31 HOH HOH . C 3 HOH A 32 532 32 HOH HOH . C 3 HOH A 33 533 33 HOH HOH . C 3 HOH A 34 534 34 HOH HOH . C 3 HOH A 35 535 35 HOH HOH . C 3 HOH A 36 536 36 HOH HOH . C 3 HOH A 37 537 37 HOH HOH . C 3 HOH A 38 538 38 HOH HOH . C 3 HOH A 39 539 39 HOH HOH . C 3 HOH A 40 540 40 HOH HOH . C 3 HOH A 41 541 41 HOH HOH . C 3 HOH A 42 542 42 HOH HOH . C 3 HOH A 43 543 43 HOH HOH . C 3 HOH A 44 544 44 HOH HOH . C 3 HOH A 45 545 45 HOH HOH . C 3 HOH A 46 546 46 HOH HOH . C 3 HOH A 47 547 47 HOH HOH . C 3 HOH A 48 548 48 HOH HOH . C 3 HOH A 49 549 49 HOH HOH . C 3 HOH A 50 550 50 HOH HOH . C 3 HOH A 51 551 51 HOH HOH . C 3 HOH A 52 552 52 HOH HOH . C 3 HOH A 53 553 53 HOH HOH . C 3 HOH A 54 554 54 HOH HOH . C 3 HOH A 55 555 55 HOH HOH . C 3 HOH A 56 556 56 HOH HOH . C 3 HOH A 57 557 57 HOH HOH . C 3 HOH A 58 558 58 HOH HOH . C 3 HOH A 59 559 59 HOH HOH . C 3 HOH A 60 560 60 HOH HOH . C 3 HOH A 61 561 61 HOH HOH . C 3 HOH A 62 562 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBB VSI . . . B 2 17.79 -19.085 2.25 1 29.88 ? CBB VSI 401 A 1 HETATM 2 C CBA VSI . . . B 2 18.465 -20.245 1.586 1 39.72 ? CBA VSI 401 A 1 HETATM 3 O OBC VSI . . . B 2 19.678 -20.301 1.499 1 46.63 ? OBC VSI 401 A 1 HETATM 4 N NAZ VSI . . . B 2 17.635 -21.286 1.039 1 41.18 ? NAZ VSI 401 A 1 HETATM 5 C CAU VSI . . . B 2 18.124 -22.495 0.395 1 42.77 ? CAU VSI 401 A 1 HETATM 6 C CAV VSI . . . B 2 18.092 -22.658 -0.993 1 45.42 ? CAV VSI 401 A 1 HETATM 7 CL CLX VSI . . . B 2 17.516 -21.361 -1.973 1 74.5 ? CLX VSI 401 A 1 HETATM 8 C CAW VSI . . . B 2 18.543 -23.84 -1.591 1 40 ? CAW VSI 401 A 1 HETATM 9 C CAT VSI . . . B 2 18.592 -23.524 1.201 1 45.16 ? CAT VSI 401 A 1 HETATM 10 CL CLY VSI . . . B 2 18.636 -23.37 2.943 1 75.21 ? CLY VSI 401 A 1 HETATM 11 C CAS VSI . . . B 2 19.038 -24.691 0.607 1 40.17 ? CAS VSI 401 A 1 HETATM 12 C CAR VSI . . . B 2 19.021 -24.854 -0.782 1 40.84 ? CAR VSI 401 A 1 HETATM 13 C CAQ VSI . . . B 2 19.51 -26.172 -1.311 1 36.76 ? CAQ VSI 401 A 1 HETATM 14 N NAO VSI . . . B 2 20.213 -26.147 -2.575 1 36.21 ? NAO VSI 401 A 1 HETATM 15 C CAN VSI . . . B 2 21.62 -25.936 -2.89 1 41.62 ? CAN VSI 401 A 1 HETATM 16 N NAP VSI . . . B 2 21.906 -26.006 -4.172 1 36.99 ? NAP VSI 401 A 1 HETATM 17 N NAL VSI . . . B 2 22.704 -25.641 -1.945 1 48.11 ? NAL VSI 401 A 1 HETATM 18 C C VSI . . . B 2 22.833 -25.472 -0.492 1 61.06 ? C VSI 401 A 1 HETATM 19 O O VSI . . . B 2 21.914 -25.563 0.306 1 59.61 ? O VSI 401 A 1 HETATM 20 C CA VSI . . . B 2 24.184 -25.189 0.117 1 61.29 ? CA VSI 401 A 1 HETATM 21 N N VSI . . . B 2 24.63 -26.43 0.712 1 66.27 ? N VSI 401 A 1 HETATM 22 C CAD VSI . . . B 2 25.796 -26.719 1.358 1 73.59 ? CAD VSI 401 A 1 HETATM 23 C CAC VSI . . . B 2 26.966 -25.982 1.698 1 70.34 ? CAC VSI 401 A 1 HETATM 24 C CAB VSI . . . B 2 28.029 -26.589 2.396 1 65.28 ? CAB VSI 401 A 1 HETATM 25 C CBD VSI . . . B 2 29.298 -25.861 2.807 1 56.08 ? CBD VSI 401 A 1 HETATM 26 N NBE VSI . . . B 2 30.267 -25.356 3.133 1 46.7 ? NBE VSI 401 A 1 HETATM 27 C CAA VSI . . . B 2 27.931 -27.93 2.751 1 70.51 ? CAA VSI 401 A 1 HETATM 28 C CAF VSI . . . B 2 26.797 -28.671 2.417 1 74.13 ? CAF VSI 401 A 1 HETATM 29 C CAE VSI . . . B 2 25.74 -28.071 1.728 1 75.15 ? CAE VSI 401 A 1 HETATM 30 C CAI VSI . . . B 2 24.522 -28.598 1.289 1 63.16 ? CAI VSI 401 A 1 HETATM 31 C CAH VSI . . . B 2 23.875 -27.553 0.667 1 60.69 ? CAH VSI 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 31 #