data_4IW3
#
_model_server_result.job_id            8DeRFGz4oPN8evTGF9xwXQ 
_model_server_result.datetime_utc      '2024-12-21 12:18:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4iw3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    4IW3 
#
_exptl.entry_id    4IW3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.086 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-OXALYLGLYCINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4IW3 
_cell.length_a            200.704 
_cell.length_b            200.704 
_cell.length_c            74.833 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4IW3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 146 A HIS 124 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc2 A OD1 ASP 148 A ASP 126 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc3 A NE2 HIS 205 A HIS 183 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc4 E MN MN . A MN 401 1_555 F O2 OGA . A OGA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc5 E MN MN . A MN 401 1_555 F O2' OGA . A OGA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc6 E MN MN . A MN 401 1_555 M O HOH . A HOH 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc7 B OG1 THR 62 B THR 26 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc8 G O1B GDP . B GDP 501 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc9 H MG MG . B MG 502 1_555 N O HOH . B HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc10 C OG1 THR 62 K THR 26 1_555 I MG MG . K MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc11 I MG MG . K MG 401 1_555 J O1B GDP . K GDP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc12 I MG MG . K MG 401 1_555 O O HOH . K HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc13 I MG MG . K MG 401 1_555 O O HOH . K HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc14 I MG MG . K MG 401 1_555 O O HOH . K HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc15 D NE2 HIS 146 J HIS 124 1_555 K MN MN . J MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc16 D OD1 ASP 148 J ASP 126 1_555 K MN MN . J MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc17 D NE2 HIS 205 J HIS 183 1_555 K MN MN . J MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc18 K MN MN . J MN 401 1_555 L O2 OGA . J OGA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc19 K MN MN . J MN 401 1_555 L O2' OGA . J OGA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc20 K MN MN . J MN 401 1_555 P O HOH . J HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
#
_chem_comp.formula           'C4 H5 N O5' 
_chem_comp.formula_weight    147.086 
_chem_comp.id                OGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-OXALYLGLYCINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OGA sing 282 n n 
C1 O1 OGA doub 283 n n 
C1 O2 OGA sing 284 n n 
C2 O2' OGA doub 285 n n 
C2 N1 OGA sing 286 n n 
C4 C5 OGA sing 287 n n 
C4 N1 OGA sing 288 n n 
C4 H4C1 OGA sing 289 n n 
C4 H4C2 OGA sing 290 n n 
C5 O3 OGA sing 291 n n 
C5 O4 OGA doub 292 n n 
O2 H2 OGA sing 293 n n 
O3 H3 OGA sing 294 n n 
N1 H1 OGA sing 295 n n 
#
_atom_sites.entry_id                     4IW3 
_atom_sites.fract_transf_matrix[1][1]    0.004982 
_atom_sites.fract_transf_matrix[1][2]    0.002877 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005753 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013363 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MN A 1 401 401 MN MN . 
F 4 OGA A 1 402 501 OGA OGA . 
G 5 GDP B 1 501 501 GDP GDP . 
H 6 MG B 1 502 401 MG MG . 
I 6 MG K 1 401 401 MG MG . 
J 5 GDP K 1 402 501 GDP GDP . 
K 3 MN J 1 401 401 MN MN . 
L 4 OGA J 1 402 501 OGA OGA . 
M 7 HOH A 1 501 1 HOH HOH . 
M 7 HOH A 2 502 3 HOH HOH . 
M 7 HOH A 3 503 5 HOH HOH . 
M 7 HOH A 4 504 10 HOH HOH . 
M 7 HOH A 5 505 13 HOH HOH . 
M 7 HOH A 6 506 15 HOH HOH . 
M 7 HOH A 7 507 16 HOH HOH . 
M 7 HOH A 8 508 18 HOH HOH . 
M 7 HOH A 9 509 19 HOH HOH . 
M 7 HOH A 10 510 23 HOH HOH . 
M 7 HOH A 11 511 24 HOH HOH . 
M 7 HOH A 12 512 25 HOH HOH . 
M 7 HOH A 13 513 27 HOH HOH . 
M 7 HOH A 14 514 30 HOH HOH . 
M 7 HOH A 15 515 32 HOH HOH . 
M 7 HOH A 16 516 34 HOH HOH . 
M 7 HOH A 17 517 35 HOH HOH . 
M 7 HOH A 18 518 37 HOH HOH . 
M 7 HOH A 19 519 38 HOH HOH . 
M 7 HOH A 20 520 48 HOH HOH . 
M 7 HOH A 21 521 49 HOH HOH . 
M 7 HOH A 22 522 51 HOH HOH . 
M 7 HOH A 23 523 52 HOH HOH . 
M 7 HOH A 24 524 53 HOH HOH . 
M 7 HOH A 25 525 54 HOH HOH . 
M 7 HOH A 26 526 61 HOH HOH . 
M 7 HOH A 27 527 64 HOH HOH . 
M 7 HOH A 28 528 68 HOH HOH . 
M 7 HOH A 29 529 69 HOH HOH . 
M 7 HOH A 30 530 73 HOH HOH . 
M 7 HOH A 31 531 75 HOH HOH . 
M 7 HOH A 32 532 77 HOH HOH . 
M 7 HOH A 33 533 78 HOH HOH . 
M 7 HOH A 34 534 79 HOH HOH . 
M 7 HOH A 35 535 80 HOH HOH . 
M 7 HOH A 36 536 87 HOH HOH . 
M 7 HOH A 37 537 90 HOH HOH . 
M 7 HOH A 38 538 95 HOH HOH . 
M 7 HOH A 39 539 96 HOH HOH . 
M 7 HOH A 40 540 97 HOH HOH . 
M 7 HOH A 41 541 99 HOH HOH . 
M 7 HOH A 42 542 100 HOH HOH . 
M 7 HOH A 43 543 102 HOH HOH . 
M 7 HOH A 44 544 105 HOH HOH . 
M 7 HOH A 45 545 108 HOH HOH . 
M 7 HOH A 46 546 115 HOH HOH . 
M 7 HOH A 47 547 121 HOH HOH . 
M 7 HOH A 48 548 124 HOH HOH . 
M 7 HOH A 49 549 127 HOH HOH . 
M 7 HOH A 50 550 133 HOH HOH . 
M 7 HOH A 51 551 134 HOH HOH . 
M 7 HOH A 52 552 136 HOH HOH . 
M 7 HOH A 53 553 138 HOH HOH . 
M 7 HOH A 54 554 143 HOH HOH . 
M 7 HOH A 55 555 145 HOH HOH . 
M 7 HOH A 56 556 146 HOH HOH . 
M 7 HOH A 57 557 147 HOH HOH . 
M 7 HOH A 58 558 153 HOH HOH . 
M 7 HOH A 59 559 156 HOH HOH . 
M 7 HOH A 60 560 158 HOH HOH . 
M 7 HOH A 61 561 160 HOH HOH . 
M 7 HOH A 62 562 162 HOH HOH . 
M 7 HOH A 63 563 163 HOH HOH . 
N 7 HOH B 1 601 7 HOH HOH . 
N 7 HOH B 2 602 20 HOH HOH . 
N 7 HOH B 3 603 29 HOH HOH . 
N 7 HOH B 4 604 36 HOH HOH . 
N 7 HOH B 5 605 57 HOH HOH . 
N 7 HOH B 6 606 62 HOH HOH . 
N 7 HOH B 7 607 67 HOH HOH . 
N 7 HOH B 8 608 71 HOH HOH . 
N 7 HOH B 9 609 72 HOH HOH . 
N 7 HOH B 10 610 74 HOH HOH . 
N 7 HOH B 11 611 83 HOH HOH . 
N 7 HOH B 12 612 86 HOH HOH . 
N 7 HOH B 13 613 91 HOH HOH . 
N 7 HOH B 14 614 104 HOH HOH . 
N 7 HOH B 15 615 114 HOH HOH . 
N 7 HOH B 16 616 116 HOH HOH . 
N 7 HOH B 17 617 122 HOH HOH . 
N 7 HOH B 18 618 135 HOH HOH . 
N 7 HOH B 19 619 141 HOH HOH . 
N 7 HOH B 20 620 142 HOH HOH . 
N 7 HOH B 21 621 148 HOH HOH . 
N 7 HOH B 22 622 157 HOH HOH . 
N 7 HOH B 23 623 161 HOH HOH . 
N 7 HOH B 24 624 166 HOH HOH . 
O 7 HOH K 1 501 2 HOH HOH . 
O 7 HOH K 2 502 6 HOH HOH . 
O 7 HOH K 3 503 8 HOH HOH . 
O 7 HOH K 4 504 9 HOH HOH . 
O 7 HOH K 5 505 12 HOH HOH . 
O 7 HOH K 6 506 22 HOH HOH . 
O 7 HOH K 7 507 28 HOH HOH . 
O 7 HOH K 8 508 42 HOH HOH . 
O 7 HOH K 9 509 44 HOH HOH . 
O 7 HOH K 10 510 45 HOH HOH . 
O 7 HOH K 11 511 47 HOH HOH . 
O 7 HOH K 12 512 55 HOH HOH . 
O 7 HOH K 13 513 56 HOH HOH . 
O 7 HOH K 14 514 60 HOH HOH . 
O 7 HOH K 15 515 65 HOH HOH . 
O 7 HOH K 16 516 66 HOH HOH . 
O 7 HOH K 17 517 70 HOH HOH . 
O 7 HOH K 18 518 81 HOH HOH . 
O 7 HOH K 19 519 84 HOH HOH . 
O 7 HOH K 20 520 85 HOH HOH . 
O 7 HOH K 21 521 94 HOH HOH . 
O 7 HOH K 22 522 109 HOH HOH . 
O 7 HOH K 23 523 110 HOH HOH . 
O 7 HOH K 24 524 111 HOH HOH . 
O 7 HOH K 25 525 117 HOH HOH . 
O 7 HOH K 26 526 118 HOH HOH . 
O 7 HOH K 27 527 119 HOH HOH . 
O 7 HOH K 28 528 120 HOH HOH . 
O 7 HOH K 29 529 123 HOH HOH . 
O 7 HOH K 30 530 126 HOH HOH . 
O 7 HOH K 31 531 128 HOH HOH . 
O 7 HOH K 32 532 129 HOH HOH . 
O 7 HOH K 33 533 144 HOH HOH . 
O 7 HOH K 34 534 151 HOH HOH . 
O 7 HOH K 35 535 159 HOH HOH . 
O 7 HOH K 36 536 164 HOH HOH . 
O 7 HOH K 37 537 165 HOH HOH . 
P 7 HOH J 1 501 4 HOH HOH . 
P 7 HOH J 2 502 11 HOH HOH . 
P 7 HOH J 3 503 14 HOH HOH . 
P 7 HOH J 4 504 17 HOH HOH . 
P 7 HOH J 5 505 21 HOH HOH . 
P 7 HOH J 6 506 26 HOH HOH . 
P 7 HOH J 7 507 31 HOH HOH . 
P 7 HOH J 8 508 33 HOH HOH . 
P 7 HOH J 9 509 39 HOH HOH . 
P 7 HOH J 10 510 40 HOH HOH . 
P 7 HOH J 11 511 41 HOH HOH . 
P 7 HOH J 12 512 43 HOH HOH . 
P 7 HOH J 13 513 46 HOH HOH . 
P 7 HOH J 14 514 50 HOH HOH . 
P 7 HOH J 15 515 58 HOH HOH . 
P 7 HOH J 16 516 59 HOH HOH . 
P 7 HOH J 17 517 63 HOH HOH . 
P 7 HOH J 18 518 76 HOH HOH . 
P 7 HOH J 19 519 82 HOH HOH . 
P 7 HOH J 20 520 88 HOH HOH . 
P 7 HOH J 21 521 89 HOH HOH . 
P 7 HOH J 22 522 92 HOH HOH . 
P 7 HOH J 23 523 93 HOH HOH . 
P 7 HOH J 24 524 98 HOH HOH . 
P 7 HOH J 25 525 101 HOH HOH . 
P 7 HOH J 26 526 103 HOH HOH . 
P 7 HOH J 27 527 106 HOH HOH . 
P 7 HOH J 28 528 107 HOH HOH . 
P 7 HOH J 29 529 112 HOH HOH . 
P 7 HOH J 30 530 113 HOH HOH . 
P 7 HOH J 31 531 125 HOH HOH . 
P 7 HOH J 32 532 130 HOH HOH . 
P 7 HOH J 33 533 131 HOH HOH . 
P 7 HOH J 34 534 132 HOH HOH . 
P 7 HOH J 35 535 137 HOH HOH . 
P 7 HOH J 36 536 139 HOH HOH . 
P 7 HOH J 37 537 140 HOH HOH . 
P 7 HOH J 38 538 149 HOH HOH . 
P 7 HOH J 39 539 150 HOH HOH . 
P 7 HOH J 40 540 152 HOH HOH . 
P 7 HOH J 41 541 154 HOH HOH . 
P 7 HOH J 42 542 155 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OGA . . . F 4 -57.019 27.72 -2.109 1 41.71 ? C1 OGA 402 A 1 
HETATM 2 C C2 OGA . . . F 4 -57.966 28.521 -1.293 1 33.22 ? C2 OGA 402 A 1 
HETATM 3 C C4 OGA . . . F 4 -59.774 28.705 0.421 1 49.23 ? C4 OGA 402 A 1 
HETATM 4 C C5 OGA . . . F 4 -59.958 28.251 1.834 1 39.38 ? C5 OGA 402 A 1 
HETATM 5 O O1 OGA . . . F 4 -56.499 26.665 -1.647 1 46.82 ? O1 OGA 402 A 1 
HETATM 6 O O2 OGA . . . F 4 -56.765 28.136 -3.282 1 27.04 ? O2 OGA 402 A 1 
HETATM 7 O O2' OGA . . . F 4 -57.997 29.719 -1.503 1 36.94 ? O2' OGA 402 A 1 
HETATM 8 O O3 OGA . . . F 4 -61.002 28.556 2.474 1 40.93 ? O3 OGA 402 A 1 
HETATM 9 N N1 OGA . . . F 4 -58.832 27.908 -0.329 1 43.25 ? N1 OGA 402 A 1 
HETATM 10 O O4 OGA . . . F 4 -59.065 27.565 2.395 1 52.37 ? O4 OGA 402 A 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           541 
_model_server_stats.encode_time_ms          22 
_model_server_stats.element_count           10 
#