data_4IWN # _model_server_result.job_id d4K_7a_S9IXE0_KzDIWwUg _model_server_result.datetime_utc '2025-01-15 14:35:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4iwn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 4IWN # _exptl.entry_id 4IWN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IWN _cell.length_a 77.12 _cell.length_b 91.38 _cell.length_c 70.64 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IWN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 291 n n C1 H11 MPD sing 292 n n C1 H12 MPD sing 293 n n C1 H13 MPD sing 294 n n C2 O2 MPD sing 295 n n C2 CM MPD sing 296 n n C2 C3 MPD sing 297 n n O2 HO2 MPD sing 298 n n CM HM1 MPD sing 299 n n CM HM2 MPD sing 300 n n CM HM3 MPD sing 301 n n C3 C4 MPD sing 302 n n C3 H31 MPD sing 303 n n C3 H32 MPD sing 304 n n C4 O4 MPD sing 305 n n C4 C5 MPD sing 306 n n C4 H4 MPD sing 307 n n O4 HO4 MPD sing 308 n n C5 H51 MPD sing 309 n n C5 H52 MPD sing 310 n n C5 H53 MPD sing 311 n n # _atom_sites.entry_id 4IWN _atom_sites.fract_transf_matrix[1][1] 0.012967 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GEK A 1 301 1 GEK SAO . D 3 MPD A 1 302 4 MPD MPD . E 2 GEK B 1 301 2 GEK SAO . F 3 MPD B 1 302 3 MPD MPD . G 4 HOH A 1 401 1 HOH HOH . G 4 HOH A 2 402 2 HOH HOH . G 4 HOH A 3 403 3 HOH HOH . G 4 HOH A 4 404 4 HOH HOH . G 4 HOH A 5 405 6 HOH HOH . G 4 HOH A 6 406 9 HOH HOH . G 4 HOH A 7 407 10 HOH HOH . G 4 HOH A 8 408 11 HOH HOH . G 4 HOH A 9 409 12 HOH HOH . G 4 HOH A 10 410 13 HOH HOH . G 4 HOH A 11 411 15 HOH HOH . G 4 HOH A 12 412 16 HOH HOH . G 4 HOH A 13 413 17 HOH HOH . G 4 HOH A 14 414 18 HOH HOH . G 4 HOH A 15 415 19 HOH HOH . G 4 HOH A 16 416 21 HOH HOH . G 4 HOH A 17 417 22 HOH HOH . G 4 HOH A 18 418 23 HOH HOH . G 4 HOH A 19 419 24 HOH HOH . G 4 HOH A 20 420 26 HOH HOH . G 4 HOH A 21 421 27 HOH HOH . G 4 HOH A 22 422 28 HOH HOH . G 4 HOH A 23 423 29 HOH HOH . G 4 HOH A 24 424 30 HOH HOH . G 4 HOH A 25 425 31 HOH HOH . G 4 HOH A 26 426 32 HOH HOH . G 4 HOH A 27 427 33 HOH HOH . G 4 HOH A 28 428 34 HOH HOH . G 4 HOH A 29 429 36 HOH HOH . G 4 HOH A 30 430 37 HOH HOH . G 4 HOH A 31 431 38 HOH HOH . G 4 HOH A 32 432 39 HOH HOH . G 4 HOH A 33 433 40 HOH HOH . G 4 HOH A 34 434 43 HOH HOH . G 4 HOH A 35 435 44 HOH HOH . G 4 HOH A 36 436 45 HOH HOH . G 4 HOH A 37 437 46 HOH HOH . G 4 HOH A 38 438 47 HOH HOH . G 4 HOH A 39 439 49 HOH HOH . G 4 HOH A 40 440 50 HOH HOH . G 4 HOH A 41 441 51 HOH HOH . G 4 HOH A 42 442 52 HOH HOH . G 4 HOH A 43 443 53 HOH HOH . G 4 HOH A 44 444 54 HOH HOH . G 4 HOH A 45 445 55 HOH HOH . G 4 HOH A 46 446 56 HOH HOH . G 4 HOH A 47 447 58 HOH HOH . G 4 HOH A 48 448 59 HOH HOH . G 4 HOH A 49 449 60 HOH HOH . G 4 HOH A 50 450 61 HOH HOH . G 4 HOH A 51 451 62 HOH HOH . G 4 HOH A 52 452 64 HOH HOH . G 4 HOH A 53 453 65 HOH HOH . G 4 HOH A 54 454 66 HOH HOH . G 4 HOH A 55 455 67 HOH HOH . G 4 HOH A 56 456 68 HOH HOH . G 4 HOH A 57 457 69 HOH HOH . G 4 HOH A 58 458 70 HOH HOH . G 4 HOH A 59 459 72 HOH HOH . G 4 HOH A 60 460 73 HOH HOH . G 4 HOH A 61 461 77 HOH HOH . G 4 HOH A 62 462 78 HOH HOH . G 4 HOH A 63 463 80 HOH HOH . G 4 HOH A 64 464 81 HOH HOH . G 4 HOH A 65 465 82 HOH HOH . G 4 HOH A 66 466 83 HOH HOH . G 4 HOH A 67 467 85 HOH HOH . G 4 HOH A 68 468 86 HOH HOH . G 4 HOH A 69 469 88 HOH HOH . G 4 HOH A 70 470 89 HOH HOH . G 4 HOH A 71 471 90 HOH HOH . G 4 HOH A 72 472 93 HOH HOH . G 4 HOH A 73 473 94 HOH HOH . G 4 HOH A 74 474 95 HOH HOH . G 4 HOH A 75 475 97 HOH HOH . G 4 HOH A 76 476 98 HOH HOH . G 4 HOH A 77 477 99 HOH HOH . G 4 HOH A 78 478 101 HOH HOH . G 4 HOH A 79 479 102 HOH HOH . G 4 HOH A 80 480 103 HOH HOH . G 4 HOH A 81 481 104 HOH HOH . G 4 HOH A 82 482 108 HOH HOH . G 4 HOH A 83 483 110 HOH HOH . G 4 HOH A 84 484 112 HOH HOH . G 4 HOH A 85 485 113 HOH HOH . G 4 HOH A 86 486 114 HOH HOH . G 4 HOH A 87 487 116 HOH HOH . G 4 HOH A 88 488 117 HOH HOH . G 4 HOH A 89 489 118 HOH HOH . G 4 HOH A 90 490 120 HOH HOH . G 4 HOH A 91 491 121 HOH HOH . G 4 HOH A 92 492 122 HOH HOH . G 4 HOH A 93 493 123 HOH HOH . G 4 HOH A 94 494 125 HOH HOH . G 4 HOH A 95 495 126 HOH HOH . G 4 HOH A 96 496 127 HOH HOH . G 4 HOH A 97 497 131 HOH HOH . G 4 HOH A 98 498 133 HOH HOH . G 4 HOH A 99 499 136 HOH HOH . G 4 HOH A 100 500 138 HOH HOH . G 4 HOH A 101 501 139 HOH HOH . G 4 HOH A 102 502 141 HOH HOH . G 4 HOH A 103 503 142 HOH HOH . G 4 HOH A 104 504 145 HOH HOH . G 4 HOH A 105 505 146 HOH HOH . G 4 HOH A 106 506 147 HOH HOH . G 4 HOH A 107 507 148 HOH HOH . G 4 HOH A 108 508 150 HOH HOH . G 4 HOH A 109 509 151 HOH HOH . G 4 HOH A 110 510 152 HOH HOH . G 4 HOH A 111 511 153 HOH HOH . G 4 HOH A 112 512 155 HOH HOH . G 4 HOH A 113 513 156 HOH HOH . G 4 HOH A 114 514 157 HOH HOH . G 4 HOH A 115 515 158 HOH HOH . G 4 HOH A 116 516 159 HOH HOH . G 4 HOH A 117 517 162 HOH HOH . G 4 HOH A 118 518 163 HOH HOH . G 4 HOH A 119 519 164 HOH HOH . G 4 HOH A 120 520 165 HOH HOH . G 4 HOH A 121 521 166 HOH HOH . G 4 HOH A 122 522 168 HOH HOH . G 4 HOH A 123 523 169 HOH HOH . G 4 HOH A 124 524 170 HOH HOH . G 4 HOH A 125 525 171 HOH HOH . G 4 HOH A 126 526 172 HOH HOH . G 4 HOH A 127 527 174 HOH HOH . G 4 HOH A 128 528 176 HOH HOH . G 4 HOH A 129 529 177 HOH HOH . G 4 HOH A 130 530 182 HOH HOH . G 4 HOH A 131 531 184 HOH HOH . G 4 HOH A 132 532 185 HOH HOH . G 4 HOH A 133 533 186 HOH HOH . G 4 HOH A 134 534 187 HOH HOH . G 4 HOH A 135 535 188 HOH HOH . G 4 HOH A 136 536 189 HOH HOH . G 4 HOH A 137 537 192 HOH HOH . G 4 HOH A 138 538 193 HOH HOH . G 4 HOH A 139 539 195 HOH HOH . G 4 HOH A 140 540 196 HOH HOH . G 4 HOH A 141 541 197 HOH HOH . G 4 HOH A 142 542 198 HOH HOH . G 4 HOH A 143 543 200 HOH HOH . G 4 HOH A 144 544 201 HOH HOH . G 4 HOH A 145 545 204 HOH HOH . G 4 HOH A 146 546 206 HOH HOH . G 4 HOH A 147 547 207 HOH HOH . G 4 HOH A 148 548 209 HOH HOH . G 4 HOH A 149 549 211 HOH HOH . G 4 HOH A 150 550 212 HOH HOH . G 4 HOH A 151 551 213 HOH HOH . G 4 HOH A 152 552 217 HOH HOH . G 4 HOH A 153 553 218 HOH HOH . G 4 HOH A 154 554 219 HOH HOH . G 4 HOH A 155 555 220 HOH HOH . G 4 HOH A 156 556 221 HOH HOH . G 4 HOH A 157 557 222 HOH HOH . G 4 HOH A 158 558 224 HOH HOH . G 4 HOH A 159 559 225 HOH HOH . G 4 HOH A 160 560 226 HOH HOH . G 4 HOH A 161 561 227 HOH HOH . G 4 HOH A 162 562 228 HOH HOH . G 4 HOH A 163 563 229 HOH HOH . G 4 HOH A 164 564 230 HOH HOH . G 4 HOH A 165 565 231 HOH HOH . G 4 HOH A 166 566 232 HOH HOH . G 4 HOH A 167 567 243 HOH HOH . G 4 HOH A 168 568 246 HOH HOH . G 4 HOH A 169 569 249 HOH HOH . G 4 HOH A 170 570 250 HOH HOH . G 4 HOH A 171 571 251 HOH HOH . G 4 HOH A 172 572 255 HOH HOH . G 4 HOH A 173 573 258 HOH HOH . G 4 HOH A 174 574 259 HOH HOH . G 4 HOH A 175 575 261 HOH HOH . G 4 HOH A 176 576 264 HOH HOH . G 4 HOH A 177 577 265 HOH HOH . G 4 HOH A 178 578 266 HOH HOH . G 4 HOH A 179 579 267 HOH HOH . G 4 HOH A 180 580 268 HOH HOH . G 4 HOH A 181 581 269 HOH HOH . G 4 HOH A 182 582 270 HOH HOH . G 4 HOH A 183 583 271 HOH HOH . G 4 HOH A 184 584 272 HOH HOH . G 4 HOH A 185 585 274 HOH HOH . G 4 HOH A 186 586 276 HOH HOH . G 4 HOH A 187 587 277 HOH HOH . G 4 HOH A 188 588 278 HOH HOH . G 4 HOH A 189 589 280 HOH HOH . G 4 HOH A 190 590 284 HOH HOH . H 4 HOH B 1 401 5 HOH HOH . H 4 HOH B 2 402 7 HOH HOH . H 4 HOH B 3 403 8 HOH HOH . H 4 HOH B 4 404 14 HOH HOH . H 4 HOH B 5 405 20 HOH HOH . H 4 HOH B 6 406 25 HOH HOH . H 4 HOH B 7 407 35 HOH HOH . H 4 HOH B 8 408 41 HOH HOH . H 4 HOH B 9 409 42 HOH HOH . H 4 HOH B 10 410 48 HOH HOH . H 4 HOH B 11 411 57 HOH HOH . H 4 HOH B 12 412 63 HOH HOH . H 4 HOH B 13 413 71 HOH HOH . H 4 HOH B 14 414 74 HOH HOH . H 4 HOH B 15 415 75 HOH HOH . H 4 HOH B 16 416 76 HOH HOH . H 4 HOH B 17 417 79 HOH HOH . H 4 HOH B 18 418 84 HOH HOH . H 4 HOH B 19 419 87 HOH HOH . H 4 HOH B 20 420 91 HOH HOH . H 4 HOH B 21 421 92 HOH HOH . H 4 HOH B 22 422 96 HOH HOH . H 4 HOH B 23 423 100 HOH HOH . H 4 HOH B 24 424 105 HOH HOH . H 4 HOH B 25 425 106 HOH HOH . H 4 HOH B 26 426 107 HOH HOH . H 4 HOH B 27 427 109 HOH HOH . H 4 HOH B 28 428 111 HOH HOH . H 4 HOH B 29 429 115 HOH HOH . H 4 HOH B 30 430 119 HOH HOH . H 4 HOH B 31 431 128 HOH HOH . H 4 HOH B 32 432 129 HOH HOH . H 4 HOH B 33 433 130 HOH HOH . H 4 HOH B 34 434 132 HOH HOH . H 4 HOH B 35 435 134 HOH HOH . H 4 HOH B 36 436 137 HOH HOH . H 4 HOH B 37 437 140 HOH HOH . H 4 HOH B 38 438 143 HOH HOH . H 4 HOH B 39 439 144 HOH HOH . H 4 HOH B 40 440 154 HOH HOH . H 4 HOH B 41 441 160 HOH HOH . H 4 HOH B 42 442 161 HOH HOH . H 4 HOH B 43 443 167 HOH HOH . H 4 HOH B 44 444 173 HOH HOH . H 4 HOH B 45 445 175 HOH HOH . H 4 HOH B 46 446 178 HOH HOH . H 4 HOH B 47 447 180 HOH HOH . H 4 HOH B 48 448 181 HOH HOH . H 4 HOH B 49 449 183 HOH HOH . H 4 HOH B 50 450 190 HOH HOH . H 4 HOH B 51 451 191 HOH HOH . H 4 HOH B 52 452 194 HOH HOH . H 4 HOH B 53 453 199 HOH HOH . H 4 HOH B 54 454 202 HOH HOH . H 4 HOH B 55 455 203 HOH HOH . H 4 HOH B 56 456 205 HOH HOH . H 4 HOH B 57 457 208 HOH HOH . H 4 HOH B 58 458 214 HOH HOH . H 4 HOH B 59 459 215 HOH HOH . H 4 HOH B 60 460 216 HOH HOH . H 4 HOH B 61 461 223 HOH HOH . H 4 HOH B 62 462 233 HOH HOH . H 4 HOH B 63 463 234 HOH HOH . H 4 HOH B 64 464 236 HOH HOH . H 4 HOH B 65 465 237 HOH HOH . H 4 HOH B 66 466 238 HOH HOH . H 4 HOH B 67 467 239 HOH HOH . H 4 HOH B 68 468 240 HOH HOH . H 4 HOH B 69 469 242 HOH HOH . H 4 HOH B 70 470 247 HOH HOH . H 4 HOH B 71 471 252 HOH HOH . H 4 HOH B 72 472 253 HOH HOH . H 4 HOH B 73 473 254 HOH HOH . H 4 HOH B 74 474 256 HOH HOH . H 4 HOH B 75 475 257 HOH HOH . H 4 HOH B 76 476 263 HOH HOH . H 4 HOH B 77 477 273 HOH HOH . H 4 HOH B 78 478 275 HOH HOH . H 4 HOH B 79 479 279 HOH HOH . H 4 HOH B 80 480 281 HOH HOH . H 4 HOH B 81 481 282 HOH HOH . H 4 HOH B 82 482 283 HOH HOH . H 4 HOH B 83 483 285 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . F 3 26.674 -8.141 19.542 1 40.78 ? C1 MPD 302 B 1 HETATM 2 C C2 MPD . . . F 3 27.783 -7.307 18.916 1 39.4 ? C2 MPD 302 B 1 HETATM 3 O O2 MPD . . . F 3 29.009 -7.479 19.638 1 40.34 ? O2 MPD 302 B 1 HETATM 4 C CM MPD . . . F 3 28.093 -7.807 17.533 1 37.43 ? CM MPD 302 B 1 HETATM 5 C C3 MPD . . . F 3 27.379 -5.847 18.837 1 39.75 ? C3 MPD 302 B 1 HETATM 6 C C4 MPD . . . F 3 27.323 -5.159 20.208 1 41.46 ? C4 MPD 302 B 1 HETATM 7 O O4 MPD . . . F 3 28.615 -5.106 20.807 1 43.97 ? O4 MPD 302 B 1 HETATM 8 C C5 MPD . . . F 3 26.827 -3.728 20.104 1 39.29 ? C5 MPD 302 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #