data_4IWX # _model_server_result.job_id rcIaZsbfKUX0iG-oRnCOBQ _model_server_result.datetime_utc '2024-11-27 15:49:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4iwx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4IWX # _exptl.entry_id 4IWX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IWX _cell.length_a 129.802 _cell.length_b 129.802 _cell.length_c 171.239 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IWX _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -64.901 112.411829 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 114.159333 4 'crystal symmetry operation' 12_565 x,x-y+1,-z+2/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -64.901 112.411829 114.159333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 4IWX _atom_sites.fract_transf_matrix[1][1] 0.007704 _atom_sites.fract_transf_matrix[1][2] 0.004448 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00584 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 320 ADP ADP . C 3 GLU A 1 402 321 GLU GLU . D 4 SO4 A 1 403 1 SO4 SO4 . E 4 SO4 A 1 404 2 SO4 SO4 . F 4 SO4 A 1 405 3 SO4 SO4 . G 4 SO4 A 1 406 4 SO4 SO4 . H 4 SO4 A 1 407 5 SO4 SO4 . I 5 HOH A 1 501 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -13.855 50.025 70.16 1 202.54 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . B 2 -13.59 48.967 71.204 1 201.19 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . B 2 -15.317 50.313 69.918 1 202.56 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . B 2 -13.007 51.265 70.325 1 202.83 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . B 2 -14.043 48.292 67.858 1 99.12 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . B 2 -15.549 48.394 68.023 1 102.94 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . B 2 -13.4 48.425 66.494 1 87.02 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . B 2 -13.291 49.371 68.797 1 311.51 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . B 2 -13.596 46.879 68.489 1 92.69 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . B 2 -14.464 46.035 69.245 1 80.01 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . B 2 -13.594 45.082 70.065 1 68.89 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . B 2 -13.24 43.968 69.25 1 66.47 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . B 2 -12.281 45.719 70.5 1 67.77 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . B 2 -12.301 46.149 71.856 1 77.37 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . B 2 -11.222 44.656 70.315 1 71.23 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . B 2 -10.834 44.034 71.547 1 79.23 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . B 2 -11.859 43.632 69.399 1 68.3 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . B 2 -11.144 43.794 68.113 1 62.83 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . B 2 -11.402 44.752 67.203 1 61.45 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . B 2 -10.565 44.653 66.14 1 60.14 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . B 2 -9.74 43.619 66.367 1 55.2 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . B 2 -8.628 42.991 65.635 1 55.32 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . B 2 -8.241 43.47 64.423 1 55.32 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . B 2 -8.037 41.929 66.231 1 58.03 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . B 2 -8.433 41.462 67.432 1 56.35 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . B 2 -9.435 41.991 68.153 1 50.14 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . B 2 -10.118 43.056 67.677 1 55.93 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #