data_4IXE # _model_server_result.job_id K8vl9Ipz-U2wilrMpani0g _model_server_result.datetime_utc '2024-11-08 20:55:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ixe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4IXE # _exptl.entry_id 4IXE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.59 _cell.angle_gamma 90 _cell.entry_id 4IXE _cell.length_a 36.708 _cell.length_b 42.719 _cell.length_c 58.481 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IXE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 273 n n PA O2A NDP sing 274 n n PA O5B NDP sing 275 n n PA O3 NDP sing 276 n n O2A HOA2 NDP sing 277 n n O5B C5B NDP sing 278 n n C5B C4B NDP sing 279 n n C5B H51A NDP sing 280 n n C5B H52A NDP sing 281 n n C4B O4B NDP sing 282 n n C4B C3B NDP sing 283 n n C4B H4B NDP sing 284 n n O4B C1B NDP sing 285 n n C3B O3B NDP sing 286 n n C3B C2B NDP sing 287 n n C3B H3B NDP sing 288 n n O3B HO3A NDP sing 289 n n C2B O2B NDP sing 290 n n C2B C1B NDP sing 291 n n C2B H2B NDP sing 292 n n O2B P2B NDP sing 293 n n C1B N9A NDP sing 294 n n C1B H1B NDP sing 295 n n N9A C8A NDP sing 296 n y N9A C4A NDP sing 297 n y C8A N7A NDP doub 298 n y C8A H8A NDP sing 299 n n N7A C5A NDP sing 300 n y C5A C6A NDP sing 301 n y C5A C4A NDP doub 302 n y C6A N6A NDP sing 303 n n C6A N1A NDP doub 304 n y N6A H61A NDP sing 305 n n N6A H62A NDP sing 306 n n N1A C2A NDP sing 307 n y C2A N3A NDP doub 308 n y C2A H2A NDP sing 309 n n N3A C4A NDP sing 310 n y O3 PN NDP sing 311 n n PN O1N NDP doub 312 n n PN O2N NDP sing 313 n n PN O5D NDP sing 314 n n O2N H21N NDP sing 315 n n O5D C5D NDP sing 316 n n C5D C4D NDP sing 317 n n C5D H51N NDP sing 318 n n C5D H52N NDP sing 319 n n C4D O4D NDP sing 320 n n C4D C3D NDP sing 321 n n C4D H4D NDP sing 322 n n O4D C1D NDP sing 323 n n C3D O3D NDP sing 324 n n C3D C2D NDP sing 325 n n C3D H3D NDP sing 326 n n O3D HO3N NDP sing 327 n n C2D O2D NDP sing 328 n n C2D C1D NDP sing 329 n n C2D H2D NDP sing 330 n n O2D HO2N NDP sing 331 n n C1D N1N NDP sing 332 n n C1D H1D NDP sing 333 n n N1N C2N NDP sing 334 n n N1N C6N NDP sing 335 n n C2N C3N NDP doub 336 n n C2N H2N NDP sing 337 n n C3N C7N NDP sing 338 n n C3N C4N NDP sing 339 n n C7N O7N NDP doub 340 n n C7N N7N NDP sing 341 n n N7N H71N NDP sing 342 n n N7N H72N NDP sing 343 n n C4N C5N NDP sing 344 n n C4N H41N NDP sing 345 n n C4N H42N NDP sing 346 n n C5N C6N NDP doub 347 n n C5N H5N NDP sing 348 n n C6N H6N NDP sing 349 n n P2B O1X NDP doub 350 n n P2B O2X NDP sing 351 n n P2B O3X NDP sing 352 n n O2X HOP2 NDP sing 353 n n O3X HOP3 NDP sing 354 n n # _atom_sites.entry_id 4IXE _atom_sites.fract_transf_matrix[1][1] 0.027242 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001709 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IXE D 1 301 1 IXE IXE . C 3 NDP D 1 302 1 NDP NDP . D 4 HOH D 1 401 1 HOH HOH . D 4 HOH D 2 402 2 HOH HOH . D 4 HOH D 3 403 3 HOH HOH . D 4 HOH D 4 404 4 HOH HOH . D 4 HOH D 5 405 5 HOH HOH . D 4 HOH D 6 406 6 HOH HOH . D 4 HOH D 7 407 7 HOH HOH . D 4 HOH D 8 408 8 HOH HOH . D 4 HOH D 9 409 9 HOH HOH . D 4 HOH D 10 410 10 HOH HOH . D 4 HOH D 11 411 11 HOH HOH . D 4 HOH D 12 412 12 HOH HOH . D 4 HOH D 13 413 13 HOH HOH . D 4 HOH D 14 414 14 HOH HOH . D 4 HOH D 15 415 15 HOH HOH . D 4 HOH D 16 416 16 HOH HOH . D 4 HOH D 17 417 17 HOH HOH . D 4 HOH D 18 418 18 HOH HOH . D 4 HOH D 19 419 19 HOH HOH . D 4 HOH D 20 420 20 HOH HOH . D 4 HOH D 21 421 21 HOH HOH . D 4 HOH D 22 422 22 HOH HOH . D 4 HOH D 23 423 23 HOH HOH . D 4 HOH D 24 424 24 HOH HOH . D 4 HOH D 25 425 25 HOH HOH . D 4 HOH D 26 426 26 HOH HOH . D 4 HOH D 27 427 27 HOH HOH . D 4 HOH D 28 428 28 HOH HOH . D 4 HOH D 29 429 29 HOH HOH . D 4 HOH D 30 430 30 HOH HOH . D 4 HOH D 31 431 31 HOH HOH . D 4 HOH D 32 432 32 HOH HOH . D 4 HOH D 33 433 33 HOH HOH . D 4 HOH D 34 434 34 HOH HOH . D 4 HOH D 35 435 35 HOH HOH . D 4 HOH D 36 436 36 HOH HOH . D 4 HOH D 37 437 37 HOH HOH . D 4 HOH D 38 438 38 HOH HOH . D 4 HOH D 39 439 39 HOH HOH . D 4 HOH D 40 440 40 HOH HOH . D 4 HOH D 41 441 41 HOH HOH . D 4 HOH D 42 442 42 HOH HOH . D 4 HOH D 43 443 43 HOH HOH . D 4 HOH D 44 444 44 HOH HOH . D 4 HOH D 45 445 45 HOH HOH . D 4 HOH D 46 446 46 HOH HOH . D 4 HOH D 47 447 47 HOH HOH . D 4 HOH D 48 448 48 HOH HOH . D 4 HOH D 49 449 49 HOH HOH . D 4 HOH D 50 450 50 HOH HOH . D 4 HOH D 51 451 51 HOH HOH . D 4 HOH D 52 452 52 HOH HOH . D 4 HOH D 53 453 53 HOH HOH . D 4 HOH D 54 454 54 HOH HOH . D 4 HOH D 55 455 55 HOH HOH . D 4 HOH D 56 456 56 HOH HOH . D 4 HOH D 57 457 57 HOH HOH . D 4 HOH D 58 458 58 HOH HOH . D 4 HOH D 59 459 59 HOH HOH . D 4 HOH D 60 460 61 HOH HOH . D 4 HOH D 61 461 62 HOH HOH . D 4 HOH D 62 462 63 HOH HOH . D 4 HOH D 63 463 64 HOH HOH . D 4 HOH D 64 464 65 HOH HOH . D 4 HOH D 65 465 66 HOH HOH . D 4 HOH D 66 466 67 HOH HOH . D 4 HOH D 67 467 68 HOH HOH . D 4 HOH D 68 468 69 HOH HOH . D 4 HOH D 69 469 71 HOH HOH . D 4 HOH D 70 470 72 HOH HOH . D 4 HOH D 71 471 74 HOH HOH . D 4 HOH D 72 472 75 HOH HOH . D 4 HOH D 73 473 76 HOH HOH . D 4 HOH D 74 474 77 HOH HOH . D 4 HOH D 75 475 79 HOH HOH . D 4 HOH D 76 476 80 HOH HOH . D 4 HOH D 77 477 81 HOH HOH . D 4 HOH D 78 478 82 HOH HOH . D 4 HOH D 79 479 83 HOH HOH . D 4 HOH D 80 480 84 HOH HOH . D 4 HOH D 81 481 85 HOH HOH . D 4 HOH D 82 482 86 HOH HOH . D 4 HOH D 83 483 87 HOH HOH . D 4 HOH D 84 484 88 HOH HOH . D 4 HOH D 85 485 89 HOH HOH . D 4 HOH D 86 486 90 HOH HOH . D 4 HOH D 87 487 91 HOH HOH . D 4 HOH D 88 488 92 HOH HOH . D 4 HOH D 89 489 93 HOH HOH . D 4 HOH D 90 490 94 HOH HOH . D 4 HOH D 91 491 95 HOH HOH . D 4 HOH D 92 492 96 HOH HOH . D 4 HOH D 93 493 97 HOH HOH . D 4 HOH D 94 494 98 HOH HOH . D 4 HOH D 95 495 99 HOH HOH . D 4 HOH D 96 496 100 HOH HOH . D 4 HOH D 97 497 101 HOH HOH . D 4 HOH D 98 498 102 HOH HOH . D 4 HOH D 99 499 103 HOH HOH . D 4 HOH D 100 500 104 HOH HOH . D 4 HOH D 101 501 105 HOH HOH . D 4 HOH D 102 502 106 HOH HOH . D 4 HOH D 103 503 107 HOH HOH . D 4 HOH D 104 504 108 HOH HOH . D 4 HOH D 105 505 109 HOH HOH . D 4 HOH D 106 506 110 HOH HOH . D 4 HOH D 107 507 111 HOH HOH . D 4 HOH D 108 508 112 HOH HOH . D 4 HOH D 109 509 113 HOH HOH . D 4 HOH D 110 510 114 HOH HOH . D 4 HOH D 111 511 115 HOH HOH . D 4 HOH D 112 512 116 HOH HOH . D 4 HOH D 113 513 117 HOH HOH . D 4 HOH D 114 514 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 3 16.377 4.741 21.696 1 11.91 ? PA NDP 302 D 1 HETATM 2 O O1A NDP . . . C 3 15.266 4.274 22.466 1 11.59 ? O1A NDP 302 D 1 HETATM 3 O O2A NDP . . . C 3 16.264 4.926 20.221 1 13 ? O2A NDP 302 D 1 HETATM 4 O O5B NDP . . . C 3 17.008 6.085 22.208 1 12.05 ? O5B NDP 302 D 1 HETATM 5 C C5B NDP . . . C 3 17.205 6.236 23.629 1 12.96 ? C5B NDP 302 D 1 HETATM 6 C C4B NDP . . . C 3 17.17 7.708 23.982 1 12.55 ? C4B NDP 302 D 1 HETATM 7 O O4B NDP . . . C 3 15.848 8.169 23.611 1 12.59 ? O4B NDP 302 D 1 HETATM 8 C C3B NDP . . . C 3 17.197 7.937 25.508 1 11.78 ? C3B NDP 302 D 1 HETATM 9 O O3B NDP . . . C 3 18.588 8.054 25.93 1 14.51 ? O3B NDP 302 D 1 HETATM 10 C C2B NDP . . . C 3 16.443 9.232 25.629 1 11.56 ? C2B NDP 302 D 1 HETATM 11 O O2B NDP . . . C 3 17.071 10.291 24.972 1 12.99 ? O2B NDP 302 D 1 HETATM 12 C C1B NDP . . . C 3 15.271 8.872 24.675 1 11.77 ? C1B NDP 302 D 1 HETATM 13 N N9A NDP . . . C 3 14.204 8.089 25.245 1 12.54 ? N9A NDP 302 D 1 HETATM 14 C C8A NDP . . . C 3 13.813 6.827 24.913 1 13.02 ? C8A NDP 302 D 1 HETATM 15 N N7A NDP . . . C 3 12.729 6.532 25.604 1 15.51 ? N7A NDP 302 D 1 HETATM 16 C C5A NDP . . . C 3 12.411 7.647 26.32 1 14.47 ? C5A NDP 302 D 1 HETATM 17 C C6A NDP . . . C 3 11.369 7.864 27.171 1 17.01 ? C6A NDP 302 D 1 HETATM 18 N N6A NDP . . . C 3 10.458 6.894 27.35 1 22.42 ? N6A NDP 302 D 1 HETATM 19 N N1A NDP . . . C 3 11.199 9.039 27.778 1 14.95 ? N1A NDP 302 D 1 HETATM 20 C C2A NDP . . . C 3 12.114 10.023 27.527 1 13.74 ? C2A NDP 302 D 1 HETATM 21 N N3A NDP . . . C 3 13.233 9.806 26.673 1 13.34 ? N3A NDP 302 D 1 HETATM 22 C C4A NDP . . . C 3 13.304 8.579 26.091 1 13.14 ? C4A NDP 302 D 1 HETATM 23 O O3 NDP . . . C 3 17.731 3.751 21.946 1 16.84 ? O3 NDP 302 D 1 HETATM 24 P PN NDP . . . C 3 18.063 2.377 22.527 1 16.06 ? PN NDP 302 D 1 HETATM 25 O O1N NDP . . . C 3 17.144 1.766 23.498 1 17.9 ? O1N NDP 302 D 1 HETATM 26 O O2N NDP . . . C 3 19.539 2.648 22.846 1 24.67 ? O2N NDP 302 D 1 HETATM 27 O O5D NDP . . . C 3 17.983 1.468 21.273 1 14.94 ? O5D NDP 302 D 1 HETATM 28 C C5D NDP . . . C 3 18.839 1.705 20.128 1 12.52 ? C5D NDP 302 D 1 HETATM 29 C C4D NDP . . . C 3 19.001 0.332 19.439 1 11.17 ? C4D NDP 302 D 1 HETATM 30 O O4D NDP . . . C 3 17.737 -0.109 18.963 1 11.7 ? O4D NDP 302 D 1 HETATM 31 C C3D NDP . . . C 3 19.893 0.402 18.228 1 11.62 ? C3D NDP 302 D 1 HETATM 32 O O3D NDP . . . C 3 20.706 -0.825 18.082 1 13.57 ? O3D NDP 302 D 1 HETATM 33 C C2D NDP . . . C 3 18.921 0.396 17.097 1 11.1 ? C2D NDP 302 D 1 HETATM 34 O O2D NDP . . . C 3 19.579 -0.028 15.882 1 12.82 ? O2D NDP 302 D 1 HETATM 35 C C1D NDP . . . C 3 17.89 -0.58 17.632 1 10.1 ? C1D NDP 302 D 1 HETATM 36 N N1N NDP . . . C 3 16.642 -0.389 16.943 1 9.45 ? N1N NDP 302 D 1 HETATM 37 C C2N NDP . . . C 3 15.987 -1.565 16.471 1 9.53 ? C2N NDP 302 D 1 HETATM 38 C C3N NDP . . . C 3 14.769 -1.482 15.801 1 9.79 ? C3N NDP 302 D 1 HETATM 39 C C7N NDP . . . C 3 14.167 -2.704 15.397 1 9.26 ? C7N NDP 302 D 1 HETATM 40 O O7N NDP . . . C 3 12.978 -2.717 15.028 1 10.03 ? O7N NDP 302 D 1 HETATM 41 N N7N NDP . . . C 3 14.909 -3.814 15.308 1 11.03 ? N7N NDP 302 D 1 HETATM 42 C C4N NDP . . . C 3 14.169 -0.208 15.486 1 9.47 ? C4N NDP 302 D 1 HETATM 43 C C5N NDP . . . C 3 14.852 0.955 15.993 1 10.42 ? C5N NDP 302 D 1 HETATM 44 C C6N NDP . . . C 3 16.071 0.877 16.686 1 9.76 ? C6N NDP 302 D 1 HETATM 45 P P2B NDP . . . C 3 18.08 11.427 25.689 1 12.98 ? P2B NDP 302 D 1 HETATM 46 O O1X NDP . . . C 3 17.28 11.971 26.8 1 14.7 ? O1X NDP 302 D 1 HETATM 47 O O2X NDP . . . C 3 19.241 10.554 26.205 1 14.36 ? O2X NDP 302 D 1 HETATM 48 O O3X NDP . . . C 3 18.486 12.325 24.581 1 13.21 ? O3X NDP 302 D 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #