data_4IZ6 # _model_server_result.job_id a6HMrwpRyLU4g_j9nn7xGA _model_server_result.datetime_utc '2024-12-10 07:59:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4iz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":702}' # _entry.id 4IZ6 # _exptl.entry_id 4IZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.348 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-PHOSPHOPANTETHEINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IZ6 _cell.length_a 110.99 _cell.length_b 119.11 _cell.length_c 99.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 595 A SER 575 1_555 D P24 PNS . A PNS 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? covale ? covale2 C C21 1HZ . A 1HZ 701 1_555 F S44 PNS . B PNS 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? covale ? covale3 D S44 PNS . A PNS 702 1_555 E C21 1HZ . B 1HZ 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? covale ? covale4 B OG SER 595 B SER 575 1_555 F P24 PNS . B PNS 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? # _chem_comp.formula 'C11 H23 N2 O7 P S' _chem_comp.formula_weight 358.348 _chem_comp.id PNS _chem_comp.mon_nstd_flag . _chem_comp.name "4'-PHOSPHOPANTETHEINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 P24 PNS sing 317 n n O23 HOP1 PNS sing 318 n n P24 O25 PNS sing 319 n n P24 O26 PNS doub 320 n n P24 O27 PNS sing 321 n n O25 HOP2 PNS sing 322 n n O27 C28 PNS sing 323 n n C28 C29 PNS sing 324 n n C28 H282 PNS sing 325 n n C28 H281 PNS sing 326 n n C29 C30 PNS sing 327 n n C29 C31 PNS sing 328 n n C29 C32 PNS sing 329 n n C30 H303 PNS sing 330 n n C30 H302 PNS sing 331 n n C30 H301 PNS sing 332 n n C31 H313 PNS sing 333 n n C31 H312 PNS sing 334 n n C31 H311 PNS sing 335 n n C32 O33 PNS sing 336 n n C32 C34 PNS sing 337 n n C32 H32 PNS sing 338 n n O33 H33 PNS sing 339 n n C34 O35 PNS doub 340 n n C34 N36 PNS sing 341 n n N36 C37 PNS sing 342 n n N36 H36 PNS sing 343 n n C37 C38 PNS sing 344 n n C37 H372 PNS sing 345 n n C37 H371 PNS sing 346 n n C38 C39 PNS sing 347 n n C38 H382 PNS sing 348 n n C38 H381 PNS sing 349 n n C39 O40 PNS doub 350 n n C39 N41 PNS sing 351 n n N41 C42 PNS sing 352 n n N41 H41 PNS sing 353 n n C42 C43 PNS sing 354 n n C42 H422 PNS sing 355 n n C42 H421 PNS sing 356 n n C43 S44 PNS sing 357 n n C43 H431 PNS sing 358 n n C43 H432 PNS sing 359 n n S44 H44 PNS sing 360 n n # _atom_sites.entry_id 4IZ6 _atom_sites.fract_transf_matrix[1][1] 0.00901 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1HZ A 1 701 698 1HZ SVD . D 3 PNS A 1 702 991 PNS PNS . E 2 1HZ B 1 701 698 1HZ SVD . F 3 PNS B 1 702 991 PNS PNS . G 4 HOH A 1 801 1 HOH HOH . G 4 HOH A 2 802 2 HOH HOH . G 4 HOH A 3 803 3 HOH HOH . G 4 HOH A 4 804 4 HOH HOH . G 4 HOH A 5 805 5 HOH HOH . G 4 HOH A 6 806 6 HOH HOH . G 4 HOH A 7 807 7 HOH HOH . G 4 HOH A 8 808 8 HOH HOH . G 4 HOH A 9 809 9 HOH HOH . G 4 HOH A 10 810 10 HOH HOH . G 4 HOH A 11 811 11 HOH HOH . G 4 HOH A 12 812 12 HOH HOH . G 4 HOH A 13 813 13 HOH HOH . G 4 HOH A 14 814 14 HOH HOH . G 4 HOH A 15 815 15 HOH HOH . G 4 HOH A 16 816 19 HOH HOH . G 4 HOH A 17 817 20 HOH HOH . G 4 HOH A 18 818 21 HOH HOH . G 4 HOH A 19 819 22 HOH HOH . G 4 HOH A 20 820 23 HOH HOH . G 4 HOH A 21 821 24 HOH HOH . G 4 HOH A 22 822 25 HOH HOH . G 4 HOH A 23 823 26 HOH HOH . G 4 HOH A 24 824 27 HOH HOH . G 4 HOH A 25 825 28 HOH HOH . G 4 HOH A 26 826 29 HOH HOH . G 4 HOH A 27 827 30 HOH HOH . G 4 HOH A 28 828 31 HOH HOH . G 4 HOH A 29 829 32 HOH HOH . G 4 HOH A 30 830 33 HOH HOH . G 4 HOH A 31 831 61 HOH HOH . G 4 HOH A 32 832 62 HOH HOH . G 4 HOH A 33 833 63 HOH HOH . G 4 HOH A 34 834 64 HOH HOH . G 4 HOH A 35 835 65 HOH HOH . G 4 HOH A 36 836 66 HOH HOH . G 4 HOH A 37 837 67 HOH HOH . G 4 HOH A 38 838 68 HOH HOH . G 4 HOH A 39 839 69 HOH HOH . G 4 HOH A 40 840 70 HOH HOH . G 4 HOH A 41 841 71 HOH HOH . G 4 HOH A 42 842 72 HOH HOH . G 4 HOH A 43 843 73 HOH HOH . G 4 HOH A 44 844 74 HOH HOH . G 4 HOH A 45 845 75 HOH HOH . G 4 HOH A 46 846 77 HOH HOH . G 4 HOH A 47 847 78 HOH HOH . G 4 HOH A 48 848 83 HOH HOH . G 4 HOH A 49 849 93 HOH HOH . G 4 HOH A 50 850 94 HOH HOH . G 4 HOH A 51 851 95 HOH HOH . G 4 HOH A 52 852 96 HOH HOH . G 4 HOH A 53 853 105 HOH HOH . G 4 HOH A 54 854 106 HOH HOH . G 4 HOH A 55 855 107 HOH HOH . G 4 HOH A 56 856 108 HOH HOH . G 4 HOH A 57 857 114 HOH HOH . G 4 HOH A 58 858 119 HOH HOH . G 4 HOH A 59 859 120 HOH HOH . G 4 HOH A 60 860 121 HOH HOH . G 4 HOH A 61 861 122 HOH HOH . G 4 HOH A 62 862 123 HOH HOH . G 4 HOH A 63 863 124 HOH HOH . G 4 HOH A 64 864 125 HOH HOH . G 4 HOH A 65 865 126 HOH HOH . G 4 HOH A 66 866 127 HOH HOH . G 4 HOH A 67 867 128 HOH HOH . G 4 HOH A 68 868 129 HOH HOH . G 4 HOH A 69 869 130 HOH HOH . G 4 HOH A 70 870 131 HOH HOH . G 4 HOH A 71 871 132 HOH HOH . G 4 HOH A 72 872 133 HOH HOH . G 4 HOH A 73 873 134 HOH HOH . G 4 HOH A 74 874 135 HOH HOH . G 4 HOH A 75 875 136 HOH HOH . G 4 HOH A 76 876 137 HOH HOH . G 4 HOH A 77 877 138 HOH HOH . G 4 HOH A 78 878 139 HOH HOH . G 4 HOH A 79 879 140 HOH HOH . G 4 HOH A 80 880 142 HOH HOH . G 4 HOH A 81 881 143 HOH HOH . G 4 HOH A 82 882 144 HOH HOH . G 4 HOH A 83 883 145 HOH HOH . G 4 HOH A 84 884 173 HOH HOH . G 4 HOH A 85 885 174 HOH HOH . G 4 HOH A 86 886 175 HOH HOH . G 4 HOH A 87 887 176 HOH HOH . G 4 HOH A 88 888 177 HOH HOH . G 4 HOH A 89 889 178 HOH HOH . G 4 HOH A 90 890 179 HOH HOH . G 4 HOH A 91 891 180 HOH HOH . G 4 HOH A 92 892 181 HOH HOH . G 4 HOH A 93 893 182 HOH HOH . G 4 HOH A 94 894 184 HOH HOH . G 4 HOH A 95 895 185 HOH HOH . G 4 HOH A 96 896 186 HOH HOH . G 4 HOH A 97 897 202 HOH HOH . G 4 HOH A 98 898 203 HOH HOH . G 4 HOH A 99 899 206 HOH HOH . H 4 HOH B 1 801 16 HOH HOH . H 4 HOH B 2 802 17 HOH HOH . H 4 HOH B 3 803 18 HOH HOH . H 4 HOH B 4 804 34 HOH HOH . H 4 HOH B 5 805 35 HOH HOH . H 4 HOH B 6 806 36 HOH HOH . H 4 HOH B 7 807 37 HOH HOH . H 4 HOH B 8 808 38 HOH HOH . H 4 HOH B 9 809 39 HOH HOH . H 4 HOH B 10 810 40 HOH HOH . H 4 HOH B 11 811 41 HOH HOH . H 4 HOH B 12 812 42 HOH HOH . H 4 HOH B 13 813 43 HOH HOH . H 4 HOH B 14 814 44 HOH HOH . H 4 HOH B 15 815 45 HOH HOH . H 4 HOH B 16 816 46 HOH HOH . H 4 HOH B 17 817 47 HOH HOH . H 4 HOH B 18 818 48 HOH HOH . H 4 HOH B 19 819 49 HOH HOH . H 4 HOH B 20 820 50 HOH HOH . H 4 HOH B 21 821 51 HOH HOH . H 4 HOH B 22 822 52 HOH HOH . H 4 HOH B 23 823 53 HOH HOH . H 4 HOH B 24 824 54 HOH HOH . H 4 HOH B 25 825 55 HOH HOH . H 4 HOH B 26 826 57 HOH HOH . H 4 HOH B 27 827 58 HOH HOH . H 4 HOH B 28 828 59 HOH HOH . H 4 HOH B 29 829 60 HOH HOH . H 4 HOH B 30 830 76 HOH HOH . H 4 HOH B 31 831 79 HOH HOH . H 4 HOH B 32 832 80 HOH HOH . H 4 HOH B 33 833 81 HOH HOH . H 4 HOH B 34 834 82 HOH HOH . H 4 HOH B 35 835 84 HOH HOH . H 4 HOH B 36 836 85 HOH HOH . H 4 HOH B 37 837 86 HOH HOH . H 4 HOH B 38 838 87 HOH HOH . H 4 HOH B 39 839 88 HOH HOH . H 4 HOH B 40 840 89 HOH HOH . H 4 HOH B 41 841 90 HOH HOH . H 4 HOH B 42 842 91 HOH HOH . H 4 HOH B 43 843 92 HOH HOH . H 4 HOH B 44 844 97 HOH HOH . H 4 HOH B 45 845 98 HOH HOH . H 4 HOH B 46 846 99 HOH HOH . H 4 HOH B 47 847 100 HOH HOH . H 4 HOH B 48 848 101 HOH HOH . H 4 HOH B 49 849 102 HOH HOH . H 4 HOH B 50 850 103 HOH HOH . H 4 HOH B 51 851 104 HOH HOH . H 4 HOH B 52 852 109 HOH HOH . H 4 HOH B 53 853 110 HOH HOH . H 4 HOH B 54 854 111 HOH HOH . H 4 HOH B 55 855 112 HOH HOH . H 4 HOH B 56 856 113 HOH HOH . H 4 HOH B 57 857 115 HOH HOH . H 4 HOH B 58 858 116 HOH HOH . H 4 HOH B 59 859 117 HOH HOH . H 4 HOH B 60 860 118 HOH HOH . H 4 HOH B 61 861 141 HOH HOH . H 4 HOH B 62 862 146 HOH HOH . H 4 HOH B 63 863 147 HOH HOH . H 4 HOH B 64 864 148 HOH HOH . H 4 HOH B 65 865 149 HOH HOH . H 4 HOH B 66 866 150 HOH HOH . H 4 HOH B 67 867 151 HOH HOH . H 4 HOH B 68 868 152 HOH HOH . H 4 HOH B 69 869 153 HOH HOH . H 4 HOH B 70 870 154 HOH HOH . H 4 HOH B 71 871 155 HOH HOH . H 4 HOH B 72 872 156 HOH HOH . H 4 HOH B 73 873 157 HOH HOH . H 4 HOH B 74 874 158 HOH HOH . H 4 HOH B 75 875 159 HOH HOH . H 4 HOH B 76 876 160 HOH HOH . H 4 HOH B 77 877 161 HOH HOH . H 4 HOH B 78 878 162 HOH HOH . H 4 HOH B 79 879 163 HOH HOH . H 4 HOH B 80 880 164 HOH HOH . H 4 HOH B 81 881 165 HOH HOH . H 4 HOH B 82 882 166 HOH HOH . H 4 HOH B 83 883 167 HOH HOH . H 4 HOH B 84 884 168 HOH HOH . H 4 HOH B 85 885 169 HOH HOH . H 4 HOH B 86 886 170 HOH HOH . H 4 HOH B 87 887 171 HOH HOH . H 4 HOH B 88 888 172 HOH HOH . H 4 HOH B 89 889 183 HOH HOH . H 4 HOH B 90 890 187 HOH HOH . H 4 HOH B 91 891 188 HOH HOH . H 4 HOH B 92 892 189 HOH HOH . H 4 HOH B 93 893 190 HOH HOH . H 4 HOH B 94 894 191 HOH HOH . H 4 HOH B 95 895 192 HOH HOH . H 4 HOH B 96 896 193 HOH HOH . H 4 HOH B 97 897 194 HOH HOH . H 4 HOH B 98 898 195 HOH HOH . H 4 HOH B 99 899 196 HOH HOH . H 4 HOH B 100 900 197 HOH HOH . H 4 HOH B 101 901 198 HOH HOH . H 4 HOH B 102 902 199 HOH HOH . H 4 HOH B 103 903 200 HOH HOH . H 4 HOH B 104 904 201 HOH HOH . H 4 HOH B 105 905 204 HOH HOH . H 4 HOH B 106 906 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 PNS . . . F 3 -17.076 35.079 19.73 1 15.98 ? O23 PNS 702 B 1 HETATM 2 P P24 PNS . . . F 3 -17.458 35.061 21.19 1 17.65 ? P24 PNS 702 B 1 HETATM 3 O O25 PNS . . . F 3 -18.878 35.325 21.598 1 15.7 ? O25 PNS 702 B 1 HETATM 4 O O27 PNS . . . F 3 -17.125 33.619 21.804 1 15.82 ? O27 PNS 702 B 1 HETATM 5 C C28 PNS . . . F 3 -15.828 33.071 21.653 1 16.89 ? C28 PNS 702 B 1 HETATM 6 C C29 PNS . . . F 3 -15.986 31.598 21.948 1 16.87 ? C29 PNS 702 B 1 HETATM 7 C C30 PNS . . . F 3 -16.68 31.501 23.301 1 16.48 ? C30 PNS 702 B 1 HETATM 8 C C31 PNS . . . F 3 -14.585 31.006 21.996 1 15.53 ? C31 PNS 702 B 1 HETATM 9 C C32 PNS . . . F 3 -16.833 30.951 20.832 1 19.13 ? C32 PNS 702 B 1 HETATM 10 O O33 PNS . . . F 3 -16.135 31.066 19.581 1 22.75 ? O33 PNS 702 B 1 HETATM 11 C C34 PNS . . . F 3 -17.218 29.505 21.075 1 22.51 ? C34 PNS 702 B 1 HETATM 12 O O35 PNS . . . F 3 -18.033 29.188 21.937 1 16.33 ? O35 PNS 702 B 1 HETATM 13 N N36 PNS . . . F 3 -16.66 28.573 20.296 1 24.22 ? N36 PNS 702 B 1 HETATM 14 C C37 PNS . . . F 3 -16.919 27.14 20.382 1 16.53 ? C37 PNS 702 B 1 HETATM 15 C C38 PNS . . . F 3 -17.062 26.648 18.939 1 19.02 ? C38 PNS 702 B 1 HETATM 16 C C39 PNS . . . F 3 -17.307 25.153 18.959 1 17.48 ? C39 PNS 702 B 1 HETATM 17 O O40 PNS . . . F 3 -17.967 24.669 19.858 1 14.79 ? O40 PNS 702 B 1 HETATM 18 N N41 PNS . . . F 3 -16.78 24.417 17.983 1 21.38 ? N41 PNS 702 B 1 HETATM 19 C C42 PNS . . . F 3 -16.879 22.965 17.798 1 22.52 ? C42 PNS 702 B 1 HETATM 20 C C43 PNS . . . F 3 -16.953 22.775 16.282 1 20.33 ? C43 PNS 702 B 1 HETATM 21 S S44 PNS . . . F 3 -17.377 21.072 15.822 1 20.79 ? S44 PNS 702 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #