data_4J09 # _model_server_result.job_id XcQgfiY3WWFksuQKuDVITw _model_server_result.datetime_utc '2024-11-18 20:26:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4j09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 4J09 # _exptl.entry_id 4J09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4J09 _cell.length_a 96.399 _cell.length_b 96.399 _cell.length_c 96.399 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4J09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 4J09 _atom_sites.fract_transf_matrix[1][1] 0.010374 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 301 1 PO4 PO4 . D 3 PO4 A 1 302 2 PO4 PO4 . E 3 PO4 A 1 303 3 PO4 PO4 . F 4 DMS A 1 304 1 DMS DMS . G 5 EDO A 1 305 1 EDO EDO . H 5 EDO A 1 306 2 EDO EDO . I 6 HOH A 1 401 1 HOH HOH . I 6 HOH A 2 402 2 HOH HOH . I 6 HOH A 3 403 3 HOH HOH . I 6 HOH A 4 404 4 HOH HOH . I 6 HOH A 5 405 5 HOH HOH . I 6 HOH A 6 406 6 HOH HOH . I 6 HOH A 7 407 7 HOH HOH . I 6 HOH A 8 408 8 HOH HOH . I 6 HOH A 9 409 9 HOH HOH . I 6 HOH A 10 410 10 HOH HOH . I 6 HOH A 11 411 11 HOH HOH . I 6 HOH A 12 412 12 HOH HOH . I 6 HOH A 13 413 13 HOH HOH . I 6 HOH A 14 414 14 HOH HOH . I 6 HOH A 15 415 15 HOH HOH . I 6 HOH A 16 416 16 HOH HOH . I 6 HOH A 17 417 17 HOH HOH . I 6 HOH A 18 418 18 HOH HOH . I 6 HOH A 19 419 19 HOH HOH . I 6 HOH A 20 420 20 HOH HOH . I 6 HOH A 21 421 21 HOH HOH . I 6 HOH A 22 422 22 HOH HOH . I 6 HOH A 23 423 23 HOH HOH . I 6 HOH A 24 424 24 HOH HOH . I 6 HOH A 25 425 25 HOH HOH . I 6 HOH A 26 426 26 HOH HOH . I 6 HOH A 27 427 27 HOH HOH . I 6 HOH A 28 428 28 HOH HOH . I 6 HOH A 29 429 29 HOH HOH . I 6 HOH A 30 430 30 HOH HOH . I 6 HOH A 31 431 31 HOH HOH . I 6 HOH A 32 432 32 HOH HOH . I 6 HOH A 33 433 33 HOH HOH . I 6 HOH A 34 434 34 HOH HOH . I 6 HOH A 35 435 35 HOH HOH . I 6 HOH A 36 436 36 HOH HOH . I 6 HOH A 37 437 37 HOH HOH . I 6 HOH A 38 438 38 HOH HOH . I 6 HOH A 39 439 39 HOH HOH . I 6 HOH A 40 440 40 HOH HOH . I 6 HOH A 41 441 41 HOH HOH . I 6 HOH A 42 442 42 HOH HOH . I 6 HOH A 43 443 43 HOH HOH . I 6 HOH A 44 444 44 HOH HOH . I 6 HOH A 45 445 45 HOH HOH . I 6 HOH A 46 446 46 HOH HOH . I 6 HOH A 47 447 47 HOH HOH . I 6 HOH A 48 448 48 HOH HOH . I 6 HOH A 49 449 49 HOH HOH . I 6 HOH A 50 450 50 HOH HOH . I 6 HOH A 51 451 51 HOH HOH . I 6 HOH A 52 452 52 HOH HOH . I 6 HOH A 53 453 53 HOH HOH . I 6 HOH A 54 454 54 HOH HOH . I 6 HOH A 55 455 55 HOH HOH . I 6 HOH A 56 456 56 HOH HOH . I 6 HOH A 57 457 57 HOH HOH . I 6 HOH A 58 458 58 HOH HOH . I 6 HOH A 59 459 59 HOH HOH . I 6 HOH A 60 460 60 HOH HOH . I 6 HOH A 61 461 61 HOH HOH . I 6 HOH A 62 462 62 HOH HOH . I 6 HOH A 63 463 63 HOH HOH . I 6 HOH A 64 464 64 HOH HOH . I 6 HOH A 65 465 65 HOH HOH . I 6 HOH A 66 466 66 HOH HOH . I 6 HOH A 67 467 67 HOH HOH . I 6 HOH A 68 468 68 HOH HOH . I 6 HOH A 69 469 69 HOH HOH . I 6 HOH A 70 470 70 HOH HOH . I 6 HOH A 71 471 71 HOH HOH . I 6 HOH A 72 472 72 HOH HOH . I 6 HOH A 73 473 73 HOH HOH . I 6 HOH A 74 474 74 HOH HOH . I 6 HOH A 75 475 75 HOH HOH . I 6 HOH A 76 476 76 HOH HOH . I 6 HOH A 77 477 77 HOH HOH . I 6 HOH A 78 478 78 HOH HOH . I 6 HOH A 79 479 79 HOH HOH . I 6 HOH A 80 480 80 HOH HOH . I 6 HOH A 81 481 81 HOH HOH . I 6 HOH A 82 482 82 HOH HOH . I 6 HOH A 83 483 83 HOH HOH . I 6 HOH A 84 484 84 HOH HOH . I 6 HOH A 85 485 85 HOH HOH . I 6 HOH A 86 486 86 HOH HOH . I 6 HOH A 87 487 87 HOH HOH . I 6 HOH A 88 488 88 HOH HOH . I 6 HOH A 89 489 89 HOH HOH . I 6 HOH A 90 490 90 HOH HOH . I 6 HOH A 91 491 91 HOH HOH . I 6 HOH A 92 492 92 HOH HOH . I 6 HOH A 93 493 93 HOH HOH . I 6 HOH A 94 494 94 HOH HOH . I 6 HOH A 95 495 95 HOH HOH . I 6 HOH A 96 496 96 HOH HOH . I 6 HOH A 97 497 97 HOH HOH . I 6 HOH A 98 498 98 HOH HOH . I 6 HOH A 99 499 99 HOH HOH . I 6 HOH A 100 500 100 HOH HOH . I 6 HOH A 101 501 101 HOH HOH . I 6 HOH A 102 502 102 HOH HOH . I 6 HOH A 103 503 103 HOH HOH . I 6 HOH A 104 504 104 HOH HOH . I 6 HOH A 105 505 105 HOH HOH . I 6 HOH A 106 506 106 HOH HOH . I 6 HOH A 107 507 107 HOH HOH . I 6 HOH A 108 508 108 HOH HOH . I 6 HOH A 109 509 109 HOH HOH . I 6 HOH A 110 510 110 HOH HOH . I 6 HOH A 111 511 111 HOH HOH . I 6 HOH A 112 512 112 HOH HOH . I 6 HOH A 113 513 113 HOH HOH . I 6 HOH A 114 514 114 HOH HOH . I 6 HOH A 115 515 115 HOH HOH . I 6 HOH A 116 516 116 HOH HOH . I 6 HOH A 117 517 117 HOH HOH . I 6 HOH A 118 518 119 HOH HOH . I 6 HOH A 119 519 120 HOH HOH . I 6 HOH A 120 520 121 HOH HOH . I 6 HOH A 121 521 122 HOH HOH . I 6 HOH A 122 522 123 HOH HOH . I 6 HOH A 123 523 125 HOH HOH . I 6 HOH A 124 524 126 HOH HOH . I 6 HOH A 125 525 127 HOH HOH . I 6 HOH A 126 526 128 HOH HOH . I 6 HOH A 127 527 129 HOH HOH . I 6 HOH A 128 528 130 HOH HOH . I 6 HOH A 129 529 131 HOH HOH . I 6 HOH A 130 530 132 HOH HOH . I 6 HOH A 131 531 133 HOH HOH . I 6 HOH A 132 532 134 HOH HOH . I 6 HOH A 133 533 135 HOH HOH . I 6 HOH A 134 534 136 HOH HOH . I 6 HOH A 135 535 137 HOH HOH . I 6 HOH A 136 536 138 HOH HOH . I 6 HOH A 137 537 139 HOH HOH . I 6 HOH A 138 538 140 HOH HOH . I 6 HOH A 139 539 141 HOH HOH . I 6 HOH A 140 540 142 HOH HOH . I 6 HOH A 141 541 143 HOH HOH . I 6 HOH A 142 542 144 HOH HOH . I 6 HOH A 143 543 145 HOH HOH . I 6 HOH A 144 544 146 HOH HOH . I 6 HOH A 145 545 147 HOH HOH . I 6 HOH A 146 546 148 HOH HOH . I 6 HOH A 147 547 149 HOH HOH . I 6 HOH A 148 548 150 HOH HOH . I 6 HOH A 149 549 151 HOH HOH . I 6 HOH A 150 550 152 HOH HOH . I 6 HOH A 151 551 154 HOH HOH . I 6 HOH A 152 552 155 HOH HOH . I 6 HOH A 153 553 156 HOH HOH . I 6 HOH A 154 554 157 HOH HOH . I 6 HOH A 155 555 158 HOH HOH . I 6 HOH A 156 556 159 HOH HOH . I 6 HOH A 157 557 160 HOH HOH . I 6 HOH A 158 558 161 HOH HOH . I 6 HOH A 159 559 162 HOH HOH . I 6 HOH A 160 560 163 HOH HOH . I 6 HOH A 161 561 164 HOH HOH . I 6 HOH A 162 562 165 HOH HOH . I 6 HOH A 163 563 167 HOH HOH . I 6 HOH A 164 564 168 HOH HOH . I 6 HOH A 165 565 169 HOH HOH . I 6 HOH A 166 566 170 HOH HOH . I 6 HOH A 167 567 171 HOH HOH . I 6 HOH A 168 568 172 HOH HOH . I 6 HOH A 169 569 173 HOH HOH . I 6 HOH A 170 570 174 HOH HOH . I 6 HOH A 171 571 175 HOH HOH . I 6 HOH A 172 572 176 HOH HOH . I 6 HOH A 173 573 177 HOH HOH . I 6 HOH A 174 574 178 HOH HOH . I 6 HOH A 175 575 179 HOH HOH . I 6 HOH A 176 576 182 HOH HOH . I 6 HOH A 177 577 183 HOH HOH . I 6 HOH A 178 578 184 HOH HOH . I 6 HOH A 179 579 185 HOH HOH . I 6 HOH A 180 580 186 HOH HOH . I 6 HOH A 181 581 187 HOH HOH . I 6 HOH A 182 582 188 HOH HOH . I 6 HOH A 183 583 189 HOH HOH . I 6 HOH A 184 584 190 HOH HOH . I 6 HOH A 185 585 191 HOH HOH . I 6 HOH A 186 586 192 HOH HOH . I 6 HOH A 187 587 193 HOH HOH . I 6 HOH A 188 588 194 HOH HOH . I 6 HOH A 189 589 195 HOH HOH . I 6 HOH A 190 590 196 HOH HOH . I 6 HOH A 191 591 198 HOH HOH . I 6 HOH A 192 592 199 HOH HOH . I 6 HOH A 193 593 200 HOH HOH . I 6 HOH A 194 594 201 HOH HOH . I 6 HOH A 195 595 202 HOH HOH . I 6 HOH A 196 596 203 HOH HOH . I 6 HOH A 197 597 181 HOH HOH . J 6 HOH B 1 101 118 HOH HOH . J 6 HOH B 2 102 124 HOH HOH . J 6 HOH B 3 103 153 HOH HOH . J 6 HOH B 4 104 166 HOH HOH . J 6 HOH B 5 105 180 HOH HOH . J 6 HOH B 6 106 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 4 13.194 18.19 -10.9 1 54.59 ? S DMS 304 A 1 HETATM 2 O O DMS . . . F 4 13.693 17.565 -12.149 1 54.81 ? O DMS 304 A 1 HETATM 3 C C1 DMS . . . F 4 12.919 16.794 -9.841 1 43.7 ? C1 DMS 304 A 1 HETATM 4 C C2 DMS . . . F 4 14.581 18.927 -10.164 1 44.98 ? C2 DMS 304 A 1 HETATM 5 H H11 DMS . . . F 4 13.144 15.854 -10.341 1 43.97 ? H11 DMS 304 A 1 HETATM 6 H H12 DMS . . . F 4 11.903 16.678 -9.468 1 45.2 ? H12 DMS 304 A 1 HETATM 7 H H13 DMS . . . F 4 13.555 16.809 -8.962 1 44.81 ? H13 DMS 304 A 1 HETATM 8 H H21 DMS . . . F 4 14.469 20.009 -10.145 1 45.87 ? H21 DMS 304 A 1 HETATM 9 H H22 DMS . . . F 4 15.496 18.715 -10.715 1 46.39 ? H22 DMS 304 A 1 HETATM 10 H H23 DMS . . . F 4 14.773 18.651 -9.13 1 46.1 ? H23 DMS 304 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #