data_4J0P
#
_model_server_result.job_id            yIzgnbT3Yl5RfbnWL_jlKg 
_model_server_result.datetime_utc      '2024-12-17 19:46:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4j0p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":503}' 
#
_entry.id    4J0P 
#
_exptl.entry_id    4J0P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4J0P 
_cell.length_a            102.537 
_cell.length_b            102.537 
_cell.length_c            169.795 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4J0P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 171 A CYS 216 1_555 A SG CYS 375 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
disulf ? disulf2 A SG CYS 233 A CYS 278 1_555 A SG CYS 398 A CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf3 A SG CYS 285 A CYS 330 1_555 A SG CYS 335 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc1 A O VAL 157 A VAL 202 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc2 A O THR 160 A THR 205 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc3 A O HIS 197 A HIS 242 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc4 A O TYR 200 A TYR 245 1_555 B NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc5 B NA NA . A NA 501 1_555 F O HOH . A HOH 669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc6 C NA NA . A NA 502 1_555 F O HOH . A HOH 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc7 C NA NA . A NA 502 1_555 F O HOH . A HOH 748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc8 C NA NA . A NA 502 1_555 F O HOH . A HOH 752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc9 C NA NA . A NA 502 1_555 F O HOH . A HOH 791 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 127 n n 
S C1 DMS sing 128 n n 
S C2 DMS sing 129 n n 
C1 H11 DMS sing 130 n n 
C1 H12 DMS sing 131 n n 
C1 H13 DMS sing 132 n n 
C2 H21 DMS sing 133 n n 
C2 H22 DMS sing 134 n n 
C2 H23 DMS sing 135 n n 
#
_atom_sites.entry_id                     4J0P 
_atom_sites.fract_transf_matrix[1][1]    0.009753 
_atom_sites.fract_transf_matrix[1][2]    0.005631 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011261 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005889 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 501 1 NA NA . 
C 2 NA A 1 502 1 NA NA . 
D 3 DMS A 1 503 1 DMS DMS . 
E 4 1H8 A 1 504 1 1H8 628 . 
F 5 HOH A 1 601 1 HOH HOH . 
F 5 HOH A 2 602 2 HOH HOH . 
F 5 HOH A 3 603 3 HOH HOH . 
F 5 HOH A 4 604 4 HOH HOH . 
F 5 HOH A 5 605 5 HOH HOH . 
F 5 HOH A 6 606 6 HOH HOH . 
F 5 HOH A 7 607 7 HOH HOH . 
F 5 HOH A 8 608 8 HOH HOH . 
F 5 HOH A 9 609 9 HOH HOH . 
F 5 HOH A 10 610 10 HOH HOH . 
F 5 HOH A 11 611 11 HOH HOH . 
F 5 HOH A 12 612 12 HOH HOH . 
F 5 HOH A 13 613 13 HOH HOH . 
F 5 HOH A 14 614 14 HOH HOH . 
F 5 HOH A 15 615 15 HOH HOH . 
F 5 HOH A 16 616 16 HOH HOH . 
F 5 HOH A 17 617 17 HOH HOH . 
F 5 HOH A 18 618 18 HOH HOH . 
F 5 HOH A 19 619 19 HOH HOH . 
F 5 HOH A 20 620 21 HOH HOH . 
F 5 HOH A 21 621 22 HOH HOH . 
F 5 HOH A 22 622 23 HOH HOH . 
F 5 HOH A 23 623 24 HOH HOH . 
F 5 HOH A 24 624 25 HOH HOH . 
F 5 HOH A 25 625 26 HOH HOH . 
F 5 HOH A 26 626 27 HOH HOH . 
F 5 HOH A 27 627 28 HOH HOH . 
F 5 HOH A 28 628 29 HOH HOH . 
F 5 HOH A 29 629 30 HOH HOH . 
F 5 HOH A 30 630 32 HOH HOH . 
F 5 HOH A 31 631 33 HOH HOH . 
F 5 HOH A 32 632 34 HOH HOH . 
F 5 HOH A 33 633 35 HOH HOH . 
F 5 HOH A 34 634 36 HOH HOH . 
F 5 HOH A 35 635 37 HOH HOH . 
F 5 HOH A 36 636 38 HOH HOH . 
F 5 HOH A 37 637 40 HOH HOH . 
F 5 HOH A 38 638 41 HOH HOH . 
F 5 HOH A 39 639 42 HOH HOH . 
F 5 HOH A 40 640 43 HOH HOH . 
F 5 HOH A 41 641 45 HOH HOH . 
F 5 HOH A 42 642 46 HOH HOH . 
F 5 HOH A 43 643 48 HOH HOH . 
F 5 HOH A 44 644 49 HOH HOH . 
F 5 HOH A 45 645 50 HOH HOH . 
F 5 HOH A 46 646 51 HOH HOH . 
F 5 HOH A 47 647 52 HOH HOH . 
F 5 HOH A 48 648 53 HOH HOH . 
F 5 HOH A 49 649 55 HOH HOH . 
F 5 HOH A 50 650 56 HOH HOH . 
F 5 HOH A 51 651 57 HOH HOH . 
F 5 HOH A 52 652 58 HOH HOH . 
F 5 HOH A 53 653 59 HOH HOH . 
F 5 HOH A 54 654 60 HOH HOH . 
F 5 HOH A 55 655 62 HOH HOH . 
F 5 HOH A 56 656 64 HOH HOH . 
F 5 HOH A 57 657 65 HOH HOH . 
F 5 HOH A 58 658 66 HOH HOH . 
F 5 HOH A 59 659 68 HOH HOH . 
F 5 HOH A 60 660 69 HOH HOH . 
F 5 HOH A 61 661 70 HOH HOH . 
F 5 HOH A 62 662 71 HOH HOH . 
F 5 HOH A 63 663 72 HOH HOH . 
F 5 HOH A 64 664 73 HOH HOH . 
F 5 HOH A 65 665 74 HOH HOH . 
F 5 HOH A 66 666 75 HOH HOH . 
F 5 HOH A 67 667 76 HOH HOH . 
F 5 HOH A 68 668 77 HOH HOH . 
F 5 HOH A 69 669 78 HOH HOH . 
F 5 HOH A 70 670 79 HOH HOH . 
F 5 HOH A 71 671 80 HOH HOH . 
F 5 HOH A 72 672 81 HOH HOH . 
F 5 HOH A 73 673 82 HOH HOH . 
F 5 HOH A 74 674 83 HOH HOH . 
F 5 HOH A 75 675 84 HOH HOH . 
F 5 HOH A 76 676 85 HOH HOH . 
F 5 HOH A 77 677 86 HOH HOH . 
F 5 HOH A 78 678 87 HOH HOH . 
F 5 HOH A 79 679 88 HOH HOH . 
F 5 HOH A 80 680 89 HOH HOH . 
F 5 HOH A 81 681 91 HOH HOH . 
F 5 HOH A 82 682 92 HOH HOH . 
F 5 HOH A 83 683 93 HOH HOH . 
F 5 HOH A 84 684 95 HOH HOH . 
F 5 HOH A 85 685 96 HOH HOH . 
F 5 HOH A 86 686 98 HOH HOH . 
F 5 HOH A 87 687 99 HOH HOH . 
F 5 HOH A 88 688 100 HOH HOH . 
F 5 HOH A 89 689 101 HOH HOH . 
F 5 HOH A 90 690 102 HOH HOH . 
F 5 HOH A 91 691 103 HOH HOH . 
F 5 HOH A 92 692 106 HOH HOH . 
F 5 HOH A 93 693 107 HOH HOH . 
F 5 HOH A 94 694 108 HOH HOH . 
F 5 HOH A 95 695 109 HOH HOH . 
F 5 HOH A 96 696 110 HOH HOH . 
F 5 HOH A 97 697 111 HOH HOH . 
F 5 HOH A 98 698 112 HOH HOH . 
F 5 HOH A 99 699 113 HOH HOH . 
F 5 HOH A 100 700 114 HOH HOH . 
F 5 HOH A 101 701 115 HOH HOH . 
F 5 HOH A 102 702 116 HOH HOH . 
F 5 HOH A 103 703 119 HOH HOH . 
F 5 HOH A 104 704 120 HOH HOH . 
F 5 HOH A 105 705 122 HOH HOH . 
F 5 HOH A 106 706 125 HOH HOH . 
F 5 HOH A 107 707 126 HOH HOH . 
F 5 HOH A 108 708 130 HOH HOH . 
F 5 HOH A 109 709 132 HOH HOH . 
F 5 HOH A 110 710 133 HOH HOH . 
F 5 HOH A 111 711 134 HOH HOH . 
F 5 HOH A 112 712 135 HOH HOH . 
F 5 HOH A 113 713 137 HOH HOH . 
F 5 HOH A 114 714 138 HOH HOH . 
F 5 HOH A 115 715 139 HOH HOH . 
F 5 HOH A 116 716 141 HOH HOH . 
F 5 HOH A 117 717 143 HOH HOH . 
F 5 HOH A 118 718 144 HOH HOH . 
F 5 HOH A 119 719 146 HOH HOH . 
F 5 HOH A 120 720 147 HOH HOH . 
F 5 HOH A 121 721 148 HOH HOH . 
F 5 HOH A 122 722 149 HOH HOH . 
F 5 HOH A 123 723 150 HOH HOH . 
F 5 HOH A 124 724 151 HOH HOH . 
F 5 HOH A 125 725 153 HOH HOH . 
F 5 HOH A 126 726 154 HOH HOH . 
F 5 HOH A 127 727 158 HOH HOH . 
F 5 HOH A 128 728 160 HOH HOH . 
F 5 HOH A 129 729 161 HOH HOH . 
F 5 HOH A 130 730 164 HOH HOH . 
F 5 HOH A 131 731 165 HOH HOH . 
F 5 HOH A 132 732 170 HOH HOH . 
F 5 HOH A 133 733 171 HOH HOH . 
F 5 HOH A 134 734 173 HOH HOH . 
F 5 HOH A 135 735 175 HOH HOH . 
F 5 HOH A 136 736 180 HOH HOH . 
F 5 HOH A 137 737 181 HOH HOH . 
F 5 HOH A 138 738 184 HOH HOH . 
F 5 HOH A 139 739 185 HOH HOH . 
F 5 HOH A 140 740 191 HOH HOH . 
F 5 HOH A 141 741 194 HOH HOH . 
F 5 HOH A 142 742 197 HOH HOH . 
F 5 HOH A 143 743 200 HOH HOH . 
F 5 HOH A 144 744 206 HOH HOH . 
F 5 HOH A 145 745 207 HOH HOH . 
F 5 HOH A 146 746 209 HOH HOH . 
F 5 HOH A 147 747 210 HOH HOH . 
F 5 HOH A 148 748 211 HOH HOH . 
F 5 HOH A 149 749 213 HOH HOH . 
F 5 HOH A 150 750 215 HOH HOH . 
F 5 HOH A 151 751 218 HOH HOH . 
F 5 HOH A 152 752 219 HOH HOH . 
F 5 HOH A 153 753 224 HOH HOH . 
F 5 HOH A 154 754 225 HOH HOH . 
F 5 HOH A 155 755 228 HOH HOH . 
F 5 HOH A 156 756 230 HOH HOH . 
F 5 HOH A 157 757 236 HOH HOH . 
F 5 HOH A 158 758 243 HOH HOH . 
F 5 HOH A 159 759 247 HOH HOH . 
F 5 HOH A 160 760 250 HOH HOH . 
F 5 HOH A 161 761 253 HOH HOH . 
F 5 HOH A 162 762 256 HOH HOH . 
F 5 HOH A 163 763 258 HOH HOH . 
F 5 HOH A 164 764 261 HOH HOH . 
F 5 HOH A 165 765 262 HOH HOH . 
F 5 HOH A 166 766 264 HOH HOH . 
F 5 HOH A 167 767 266 HOH HOH . 
F 5 HOH A 168 768 1174 HOH HOH . 
F 5 HOH A 169 769 1175 HOH HOH . 
F 5 HOH A 170 770 1177 HOH HOH . 
F 5 HOH A 171 771 1178 HOH HOH . 
F 5 HOH A 172 772 1181 HOH HOH . 
F 5 HOH A 173 773 1183 HOH HOH . 
F 5 HOH A 174 774 1185 HOH HOH . 
F 5 HOH A 175 775 1187 HOH HOH . 
F 5 HOH A 176 776 1188 HOH HOH . 
F 5 HOH A 177 777 1189 HOH HOH . 
F 5 HOH A 178 778 1190 HOH HOH . 
F 5 HOH A 179 779 1191 HOH HOH . 
F 5 HOH A 180 780 1192 HOH HOH . 
F 5 HOH A 181 781 1193 HOH HOH . 
F 5 HOH A 182 782 1197 HOH HOH . 
F 5 HOH A 183 783 1198 HOH HOH . 
F 5 HOH A 184 784 1210 HOH HOH . 
F 5 HOH A 185 785 1213 HOH HOH . 
F 5 HOH A 186 786 1221 HOH HOH . 
F 5 HOH A 187 787 1226 HOH HOH . 
F 5 HOH A 188 788 1235 HOH HOH . 
F 5 HOH A 189 789 2172 HOH HOH . 
F 5 HOH A 190 790 2174 HOH HOH . 
F 5 HOH A 191 791 2175 HOH HOH . 
F 5 HOH A 192 792 2176 HOH HOH . 
F 5 HOH A 193 793 2177 HOH HOH . 
F 5 HOH A 194 794 2180 HOH HOH . 
F 5 HOH A 195 795 2182 HOH HOH . 
F 5 HOH A 196 796 2184 HOH HOH . 
F 5 HOH A 197 797 2186 HOH HOH . 
F 5 HOH A 198 798 2187 HOH HOH . 
F 5 HOH A 199 799 2188 HOH HOH . 
F 5 HOH A 200 800 2189 HOH HOH . 
F 5 HOH A 201 801 2190 HOH HOH . 
F 5 HOH A 202 802 2197 HOH HOH . 
F 5 HOH A 203 803 2198 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . D 3 -10.634 -17.527 -7.024 1 77.24 ? S DMS 503 A 1 
HETATM 2 O O DMS . . . D 3 -10.845 -18.894 -7.577 1 77.24 ? O DMS 503 A 1 
HETATM 3 C C1 DMS . . . D 3 -8.94 -17.296 -7.002 1 75.65 ? C1 DMS 503 A 1 
HETATM 4 C C2 DMS . . . D 3 -11.135 -16.29 -8.091 1 77.16 ? C2 DMS 503 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#